Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > ZZ63 > Y10968 > A6706 > BY12196 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
483358
22291454-T-A 20129568-T-A DYZ19 A*
19679075-C-T 17567195-C-T P5_Prx A*
26271074-C-G 24124927-C-G P1_Y1 A*
20050982-A-T 17939102-A-T P5_Prx A*
23652083-C-A 21490197-C-A BY55491 Y+
24417720-AATCTTTTTTTTAAACT-A 22271573-AATCTTTTTTTTAAACT-A +
8120345-G-A 8252304-G-A BY39518 YY+
23158441-G-T 20996555-G-T BY143480 Y+
9031298-C-G 9193689-C-G BY77530 Y+
7010727-C-G 7142686-C-G BY62839 YY+
8198595-G-A 8330554-G-A BY39519 YY+
16306533-C-T 14194653-C-T BY106822 YY+
8347566-A-G 8479525-A-G BY71861 YY+
15755860-C-A 13643980-C-A BY103885 YY+
14724061-G-GT 12612129-G-GT 8×T+
8599924-A-G 8731883-A-G BY74418 YY+
22468217-G-A 20306331-G-A BY52971 DYZ19 +
9133275-C-G 9295666-C-G BY78393 Y+
14469791-C-T 12349060-C-T BY95939 YY+
22474468-G-T 20312582-G-T BY42049 DYZ19 +
8892377-C-T 9024336-C-T Z18535 Y+
9793706-G-A 9956097-G-A BY81044 Y+
21655446-A-C 19493560-A-C BY134515 YY+
17094772-C-A 14982892-C-A BY46542 YY+
15093274-T-G 12981362-T-G BY99687 YY+
28588681-TAAC-T 26442534-TAAC-T +
15708745-A-T 13596865-A-T BY103451 YY+
18775134-G-A 16663254-G-A BY123803 YY+
18110270-C-CA 15998390-C-CA 9×A+
22275484-T-G 20113598-T-G DYZ19 *
28805344-AC-A,AA 26659197-AC-A,AA *
28811117-G-T 26664970-G-T *
22231258-C-A 20069372-C-A DYZ19 *
15777534-C-A 13665654-C-A **
15688492-C-A 13576612-C-A **
15576624-G-A 13464744-G-A **
15475007-C-A 13363127-C-A **
15786549-A-G 13674669-A-G **
15815232-G-A 13703352-G-A **
15733560-T-G 13621680-T-G **
15815235-G-A 13703355-G-A **
15742487-G-A 13630607-G-A **
21491080-G-T 19329194-G-T **
15815240-G-A 13703360-G-A **
16728530-C-A 14616650-C-A **
17629775-C-G 15517895-C-G **
17571891-G-A 15460011-G-A **
17474708-C-T 15362828-C-T **
17376078-A-G 15264198-A-G **
17306638-G-T 15194758-G-T **
17210982-C-A 15099102-C-A **
17071361-A-G 14959481-A-G **
17064796-C-A 14952916-C-A **
16813950-T-C 14702070-T-C **
16750167-T-C 14638287-T-C **
16707042-T-A 14595162-T-A **
15866164-C-A 13754284-C-A **
16687515-C-A 14575635-C-A **
16653442-C-A 14541562-C-A **
16635918-C-A 14524038-C-A **
16363993-G-A 14252113-G-A **
16351569-A-G 14239689-A-G **
16284176-G-C 14172296-G-C **
16060435-G-A 13948555-G-A **
16019070-T-C 13907190-T-C PR2021 **
15974468-C-A 13862588-C-A **
15906509-C-A 13794629-C-A **
15870697-A-G 13758817-A-G **
16045370-C-A 13933490-C-A **
14799823-A-C 12687894-A-C **
15431657-T-C 13319777-T-C **
13953256-C-A 11832550-C-A **
14181532-C-T 12060826-C-T **
14142091-GA-G 12021385-GA-G **
14109396-G-A 11988690-G-A **
14107812-C-A 11987106-C-A **
14093625-C-A 11972919-C-A **
14075428-G-A 11954722-G-A **
14021543-C-A 11900837-C-A **
14012926-G-T 11892220-G-T **
13994876-G-T 11874170-G-T **
13938748-T-C 11818042-T-C **
14266357-A-G 12145651-A-G **
13890878-T-A 11770172-T-A **
13885566-A-T 11764860-A-T **
11656309-C-A **
13722720-A-C 11567044-A-C **
13605746-C-A 11450070-C-A **
13588780-A-T 11433104-A-T **
13572274-C-A 11416598-C-A **
13571221-A-T 11415545-A-T **
13463695-C-A 11308019-C-A **
14263310-C-A 12142604-C-A **
14266405-T-A 12145699-T-A **
15395124-A-T 13283244-A-T **
14609798-TCAAA-T 12498000-TCAAA-T **
15221951-C-A 13110037-C-A **
15193607-T-G 13081693-T-G **
15193602-T-C 13081688-T-C **
14886332-C-A 12774398-C-A **
18174618-T-G 16062738-T-G **
14727328-T-TC 12615396-T-TC **
14700774-T-C 12588840-T-C **
14693701-C-A 12581767-C-A **
14610638-C-A 12498840-C-A **
14598485-G-T 12486685-G-T **
14324337-A-T 12203631-A-T **
14592143-C-A 12480343-C-A **
14564022-C-A 12452222-C-A **
14544096-C-A 12432297-C-A **
14532070-C-A 12420271-C-A **
14424910-A-G 12304185-A-G **
14398347-A-G 12277643-A-G **
14376188-T-C 12255484-T-C **
14369651-G-T 12248947-G-T **
14355602-C-A 12234897-C-A **
14350127-T-A 12229422-T-A **
17929667-G-C 15817787-G-C **
18794931-G-A 16683051-G-A **
18266198-C-A 16154318-C-A **
23249321-C-T 21087435-C-T **
25246514-A-C 23100367-A-C P2_r1 **
25246492-A-G 23100345-A-G P2_r1 **
24600694-C-T 22454547-C-T P3_t2 **
24600670-C-CAAAA 22454523-C-CAAAA P3_t2 16×A**
24080110-C-A 21933963-C-A P3_b1 **
23881858-T-G 21719972-T-G **
23807575-TC-T 21645689-TC-T **
23742293-C-A 21580407-C-A **
23345911-C-A 21184025-C-A **
23187805-C-A 21025919-C-A **
26114443-T-G 23968296-T-G P1_Y1 **
23098778-C-A 20936892-C-A **
23041120-A-T 20879234-A-T **
23041085-A-G 20879199-A-G **
22868856-T-A 20706970-T-A **
22857731-A-T 20695845-A-T **
22594646-A-G 20432760-A-G **
22205599-C-A 20043713-C-A **
22176272-C-A 20014386-C-A **
22171646-G-T 20009760-G-T **
22063909-C-A 19902023-C-A **
25981416-A-G 23835269-A-G P1_Y1 **
26170644-A-G 24024497-A-G P1_Y1 **
21976212-T-C 19814326-T-C **
28517332-C-A 26371185-C-A **
56834819-C-A **
56834818-T-A **
56828131-T-TTAAATTCGGA **
56828092-T-A **
56734933-T-A **
28738677-G-T 26592530-G-T **
28658346-A-G 26512199-A-G FT211017 **
28533778-A-T 26387631-A-T **
28523568-AT-A 26377421-AT-A 9×T**
28523519-C-T 26377372-C-T **
28506201-C-A 26360054-C-A **
26345797-G-A 24199650-G-A P1_Y1 **
28462190-C-A 26316043-C-A **
28453896-A-AAC 26307749-A-AAC P1_gr2 **
28076559-C-T 25930412-C-T P1_Y2 **
28008282-A-T 25862135-A-T P1_Y2 **
27570830-G-T 25424683-G-T P1_Y2 **
27263016-G-T 25116869-G-T P1_g3 **
27021855-A-G 24875708-A-G P1_r4 **
26834711-G-T 24688564-G-T P1_g2 **
26358840-G-T 24212693-G-T P1_Y1 **
26355484-A-C 24209337-A-C P1_Y1 **
22001314-G-T 19839428-G-T **
21969205-G-T 19807319-G-T **
18329505-T-TG 16217625-T-TG P6_Prx **
18969228-A-C 16857348-A-C **
19464063-G-T 17352183-G-T **
19424967-A-C 17313087-A-C **
19340470-ATT-A 17228590-ATT-A **
19302602-T-G 17190722-T-G **
19299805-T-C 17187925-T-C **
19254226-G-T 17142346-G-T **
19247117-C-A 17135237-C-A **
19244610-C-A 17132730-C-A **
19022417-C-T 16910537-C-T **
18996485-C-A 16884605-C-A **
18969159-G-C 16857279-G-C **
19948131-CT-C 17836251-CT-C P5_Prx **
18924959-C-A 16813079-C-A **
18890492-G-A 16778612-G-A **
18810868-A-T 16698988-A-T **
13447250-T-G 11291574-T-G **
18793649-G-T 16681769-G-T **
18707138-T-C 16595258-T-C **
18546946-A-G 16435066-A-G **
18462501-G-A 16350621-G-A P6_Dst **
18412325-T-A 16300445-T-A P6_Gap **
18346551-T-G 16234671-T-G P6_Prx **
19597208-AT-A 17485328-AT-A P5_Prx **
19949608-G-GTC 17837728-G-GTC P5_Prx 16×T**
21856769-T-C 19694883-T-C **
20424940-G-T 18263054-G-T P5_Dst **
21602703-A-G 19440817-A-G **
21596903-T-G 19435017-T-G **
21409876-A-G 19247990-A-G **
21362788-C-A 19200902-C-A **
21202674-T-G 19040788-T-G **
20875166-C-A 18713280-C-A P4_Dst **
20875100-C-A 18713214-C-A P4_Dst **
20825683-C-A 18663797-C-A P4_Gap **
20774923-A-AAC 18613037-A-AAC P4_Prx **
20574728-C-A 18412842-C-A P5_Dst **
20404430-A-G 18242544-A-G P5_Dst **
19949629-AT-A 17837749-AT-A P5_Prx **
20404429-G-A 18242543-G-A P5_Dst **
20404417-G-C 18242531-G-C P5_Dst **
20404410-C-A 18242524-C-A P5_Dst **
20352250-T-A 18190364-T-A P5_Dst **
20213296-G-T 18051410-G-T P5_Dst **
20084464-T-G 17972584-T-G P5_Dst **
20019179-A-G 17907299-A-G P5_Prx **
20019172-C-G 17907292-C-G P5_Prx **
20019162-C-T 17907282-C-T P5_Prx **
19958123-T-TG 17846243-T-TG P5_Prx **
13456356-T-G 11300680-T-G **
13463691-C-A 11308015-C-A **
13313892-C-T 11158216-C-T **
3467506-G-A 3599465-G-A **
3849528-A-G 3981487-A-G **
3849399-C-A 3981358-C-A **
3774953-C-A 3906912-C-A **
3732639-T-G 3864598-T-G **
3669981-G-T 3801940-G-T **
3602579-T-A 3734538-T-A **
3582193-G-T 3714152-G-T **
3544487-C-A 3676446-C-A **
3515820-C-T 3647779-C-T **
3501004-C-A 3632963-C-A **
3437173-T-C 3569132-T-C **
4241865-A-T 4373824-A-T **
3418827-G-T 3550786-G-T **
3388606-A-T 3520565-A-T **
3387178-T-C 3519137-T-C **
3332572-T-C 3464531-T-C **
3332524-G-C 3464483-G-C **
3329169-T-G 3461128-T-G **
3329085-A-G 3461044-A-G **
3073847-T-C 3205806-T-C **
3046529-C-A 3178488-C-A **
3018510-T-C 3150469-T-C **
2952993-C-A 3084952-C-A **
4038380-AT-A 4170339-AT-A **
4630695-G-A 4762654-G-A **
20019185-CTTTT-C 17907305-CTTTT-C P5_Prx 20×T**
5410683-C-A 5542642-C-A **
6124373-A-T 6256332-A-T **
5866949-C-A 5998908-C-A **
5866944-C-A 5998903-C-A **
5814520-C-A 5946479-C-A **
5814516-G-A 5946475-G-A **
13273795-C-A 11118119-C-A **
5492880-G-A 5624839-G-A **
5492845-T-G 5624804-T-G **
5462476-G-T 5594435-G-T **
5459841-C-A 5591800-C-A **
5363001-T-G 5494960-T-G **
4654366-G-A 4786325-G-A **
5323913-T-C 5455872-T-C **
5313650-G-T 5445609-G-T **
5203778-CTA-C 5335737-CTA-C **
5203777-G-A 5335736-G-A **
5203768-T-A 5335727-T-A **
5203760-G-A 5335719-G-A **
5193389-T-C 5325348-T-C **
5022028-T-TC 5153987-T-TC **
4969272-C-T 5101231-C-T **
4873711-C-A 5005670-C-A **
4778645-C-A 4910604-C-A **
13256104-T-G 11100428-T-G **
6267687-T-A 6399646-T-A IR3_Dst **
6273848-G-C 6405807-G-C IR3_Dst **
15866165-T-A 13754285-T-A **
10999948-C-G **
27462006-G-T 25315859-G-T P1_Y2 **
10983966-A-G **
10687636-G-T **
5022026-G-A 5153985-G-A **
3462987-G-T 3594946-G-T **
10989930-C-A **
13224557-C-A 11068881-C-A **
17464788-C-A 15352908-C-A **
13722723-G-T 11567047-G-T **
10956585-A-G **
10645893-T-A **
10935506-C-T **
19551762-C-A 17439882-C-A **
10983974-C-A **
18242805-C-A 16130925-C-A **
4582276-T-A 4714235-T-A Y36371 **
24636443-A-T 22490296-A-T P3_t2 **
58979383-C-T 56833236-C-T **
4928922-A-T 5060881-A-T **
26124420-T-C 23978273-T-C P1_Y1 **
26124427-C-A 23978280-C-A P1_Y1 31×A**
14263293-C-T 12142587-C-T V184 **
7828983-C-A 7960942-C-A **
10760402-T-TCCAC **
17503355-C-A 15391475-C-A **
15352799-C-A 13240918-C-A **
5999453-C-A 6131412-C-A **
6310789-A-AG 6442748-A-AG IR3_Dst **
17297441-C-A 15185561-C-A **
6630544-G-T 6762503-G-T **
27583000-CTTTT-C 25436853-CTTTT-C P1_Y2 22×T**
28076583-G-T 25930436-G-T P1_Y2 **
9997909-C-A 10160300-C-A **
6491947-C-A 6623906-C-A **
24278286-C-CAG 22132139-C-CAG P3_b1 8×AG**
2665769-C-A 2797728-C-A **
19465512-C-A 17353632-C-A **
28015801-A-AG 25869654-A-AG P1_Y2 **
10776069-C-T **
10776030-C-T **
23317750-A-T 21155864-A-T **
20875154-T-TC 18713268-T-TC P4_Dst **
23181440-T-C 21019554-T-C **
27585944-A-T 25439797-A-T P1_Y2 **
10020221-C-A 10182612-C-A **
20404432-C-A 18242546-C-A P5_Dst **
24660754-C-A 22514607-C-A P3_b2 **
6356266-C-A 6488225-C-A **
10760382-C-CTCTACGGCTT **
6149819-C-A 6281778-C-A IR3_Dst **
5531048-C-A 5663007-C-A **
6375557-G-T 6507516-G-T **
10677959-C-A **
10842534-C-CCAATG **
10840975-T-C **
10825124-C-T **
10795781-A-C **
10789364-C-G **
10789357-T-TTGCAATCGAGTTGAA **
10755344-T-TGCAAC **
10754002-T-A **
10688025-C-A **
10677935-C-A **
10842596-A-ACTAAC **
10672162-T-G **
10667286-G-T **
10645936-C-G **
6413993-AT-A 6545952-AT-A 9×T**
9966014-G-T 10128405-G-T **
9940757-C-A 10103148-C-A **
9750127-G-GT 9912518-G-GT **
9602657-T-TC 9765048-T-TC IR3_Prx **
9538441-G-T 9700832-G-T BY80205 IR3_Prx **
10842574-C-A **
10844332-G-T **
9427844-G-T 9590235-G-T **
10989920-CT-C **
13256631-T-A 11100955-T-A **
13234871-A-G 11079195-A-G **
13198620-C-A 11042944-C-A **
11037877-C-A **
11022020-C-T **
11018987-C-A **
11002163-G-T **
10989928-C-T **
10989925-A-AC **
10989910-C-T **
10889321-T-G **
10989895-C-A **
10989880-C-T **
10983989-C-A **
10983987-T-A **
10963912-C-A **
10956577-T-A **
10935513-A-C **
10935509-C-CTCTGCTACTA **
10932314-C-A **
10920796-G-C **
9461924-G-T 9624315-G-T **
10060668-A-C 10223059-A-C **
9088976-G-A 9251367-G-A **
7045801-G-A 7177760-G-A **
7373680-G-T 7505639-G-T **
7372839-G-A 7504798-G-A **
7307748-C-A 7439707-C-A **
7258569-C-A 7390528-C-A **
8977012-C-T 9139403-C-T **
7116100-A-G 7248059-A-G **
7116064-G-A 7248023-G-A **
7107064-G-T 7239023-G-T **
7103483-C-A 7235442-C-A **
7048049-C-A 7180008-C-A **
6975905-A-G 7107864-A-G **
7434109-A-G 7566068-A-G FT272584 **
6891861-G-C 7023820-G-C **
6798658-A-G 6930617-A-G **
6791752-G-A 6923711-G-A **
6688793-T-A 6820752-T-A **
6634220-A-C 6766179-A-C **
6634219-C-T 6766178-C-T **
6634210-C-T 6766169-C-T **
6603819-T-A 6735778-T-A **
6576634-AT-A 6708593-AT-A **
6464746-T-G 6596705-T-G **
7373741-A-G 7505700-A-G **
56834828-A-C **
8690347-G-T 8822306-G-T **
7541256-C-A 7673215-C-A **
8481991-A-C 8613950-A-C **
9111758-C-A **
8130579-A-G 8262538-A-G **
8008223-C-T 8140182-C-T **
7700655-A-G 7832614-A-G BY202623 **
8671281-T-C 8803240-T-C **
9108226-T-C **
7519121-T-C 7651080-T-C ***
11670883-G-T ***
22011676-C-A 19849790-C-A ***
11653460-T-A ***
11652734-C-A ***
9935910-C-A 10098301-C-A ***
2740564-G-T 2872523-G-T ***
6633166-C-A 6765125-C-A ***
13488552-C-T 11332876-C-T ***
13472974-C-A 11317298-C-A ***
56685616-G-T ***
13463705-C-A,T 11308029-C-A,T ***
9524019-GTATATATATATATATA-G 9686410-GTATATATATATATATA-G 21×TA***
13463654-C-G 11307978-C-G ***
18088972-C-T 15977092-C-T ***
6757885-G-T 6889844-G-T ***
19216543-C-A 17104663-C-A BY127329 ***
16818971-GTATATA-G,GTATATATATA 14707091-GTATATA-G,GTATATATATA 21×TA***
13329276-G-T 11173600-G-T ***
7623489-G-A 7755448-G-A ***
10789400-C-CGGAAG ***
15066463-C-A 12954554-C-A ***
22816365-TCAAAAAAAAAAA-AAAAAAAAAAAAA,T 20654479-TCAAAAAAAAAAA-AAAAAAAAAAAAA,T ***
10839087-C-A ***
16282397-T-A 14170517-T-A ***
22537517-TA-T 20375631-TA-T ***
22468498-T-C 20306612-T-C DYZ19 ***
7760250-G-T 7892209-G-T ***
22147345-T-C 19985459-T-C ***
16558571-C-A 14446691-C-A ***
16627717-TATATAT-T,TATACAC 14515837-TATATAT-T,TATACAC ***
10789369-C-T ***
15190034-A-T 13078120-A-T ***
7075954-C-A 7207913-C-A ***
21092211-A-T 18930325-A-T ***
17441175-AATATAT-A,AATAT 15329295-AATATAT-A,AATAT 20×AT***
8649403-G-T 8781362-G-T ***
7132001-C-T 7263960-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 483358962215678336707730603
Used in age calculations962215678336707730603
Counts of SNPs1616
Variant counts last updated 2020-06-09 02:47:13.



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