Fitzpatrick
BigY2: 642851Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 642851 |
---|---|---|---|---|---|---|---|---|
7316340-G-A | 7448299-G-A | BY64523 | Y | Y | + | |||
21642200-G-T | 19480314-G-T | BY134390 | Y | Y | + | |||
9504219-T-C | 9666610-T-C | BY79988 | + | |||||
7272557-C-T | 7404516-C-T | Z3181 | Y | Y | + | |||
8589690-G-A | 8721649-G-A | ZS6533 | Y | Y | + | |||
13942465-C-A | 11821759-C-A | ** | ||||||
13926517-G-T | 11805811-G-T | ** | ||||||
13902949-C-A | 11782243-C-A | ** | ||||||
11669255-T-A | ** | |||||||
13587697-C-A | 11432021-C-A | ** | ||||||
13726387-A-C | 11570711-A-C | ** | ||||||
13712227-C-A | 11556551-C-A | ** | ||||||
13973006-A-T | 11852300-A-T | ** | ||||||
13637946-T-C | 11482270-T-C | ** | ||||||
13597326-A-C | 11441650-A-C | ** | ||||||
14051948-T-A | 11931242-T-A | ** | ||||||
13597190-C-A | 11441514-C-A | ** | ||||||
14077075-A-C | 11956369-A-C | ** | ||||||
11659813-A-C | ** | |||||||
13475637-A-T | 11319961-A-T | ** | ||||||
13504878-A-T | 11349202-A-T | ** | ||||||
14177978-C-A | 12057272-C-A | ** | ||||||
13417682-C-A | 11262006-C-A | ** | ||||||
13361500-T-G | 11205824-T-G | ** | ||||||
13351124-T-G | 11195448-T-G | ** | ||||||
13332424-C-A | 11176748-C-A | ** | ||||||
13297313-T-A | 11141637-T-A | ** | ||||||
13297302-T-A | 11141626-T-A | ** | ||||||
13248505-G-T | 11092829-G-T | ** | ||||||
13242216-A-T | 11086540-A-T | FT47012 | ** | |||||
13227911-C-A | 11072235-C-A | ** | ||||||
13217290-A-T | 11061614-A-T | ** | ||||||
13217288-A-T | 11061612-A-T | ** | ||||||
11036137-C-A | ** | |||||||
11036122-C-A | ** | |||||||
14163486-A-C | 12042780-A-C | ** | ||||||
17196748-G-A | 15084868-G-A | M3842 | ** | |||||
14196352-A-C | 12075646-A-C | ** | ||||||
15012559-C-A | 12900647-C-A | ** | ||||||
15733827-C-T | 13621947-C-T | ** | ||||||
15684569-C-A | 13572689-C-A | ** | ||||||
15683248-T-A | 13571368-T-A | ** | ||||||
15619068-C-A | 13507188-C-A | ** | ||||||
15423923-A-C | 13312043-A-C | ** | ||||||
15420157-G-T | 13308277-G-T | ** | ||||||
15402506-A-T | 13290626-A-T | ** | ||||||
15399434-A-T | 13287554-A-T | FT89339 | ** | |||||
15396821-C-A | 13284941-C-A | ** | ||||||
15300105-C-T | 13188204-C-T | ** | ||||||
15221732-C-A | 13109818-C-A | ** | ||||||
15185452-A-G | 13073538-A-G | ** | ||||||
15177778-T-A | 13065864-T-A | ** | ||||||
15177479-G-A | 13065565-G-A | Y40859 | ** | |||||
14965176-A-C | 12853251-A-C | ** | ||||||
11035630-A-G | ** | |||||||
14721808-T-G | 12609876-T-G | ** | ||||||
14667953-A-C | 12556019-A-C | ** | ||||||
14667885-T-C | 12555951-T-C | ** | ||||||
14619682-A-C | 12507880-A-C | ** | ||||||
14568019-T-C | 12456219-T-C | ** | ||||||
14493552-T-A | 12381749-T-A | ** | ||||||
14447389-T-A | 12326662-T-A | ** | ||||||
14431401-A-T | 12310674-A-T | ** | ||||||
14431397-C-G | 12310670-C-G | ** | ||||||
14431384-A-T | 12310657-A-T | ** | ||||||
14384686-C-A | 12263982-C-A | ** | ||||||
14355499-A-T | 12234794-A-T | ** | ||||||
14307953-C-CAA | 12187247-C-CAA | 15×A | ** | |||||
14253269-G-T | 12132563-G-T | ** | ||||||
11035656-C-T | ** | |||||||
11030704-T-C | ** | |||||||
11035629-C-T | ** | |||||||
10841954-C-A | ** | |||||||
10889162-C-G | ** | |||||||
10877957-C-A | ** | |||||||
10876583-T-A | ** | |||||||
10876562-A-T | ** | |||||||
10876557-A-ATGCCT | ** | |||||||
10876539-C-T | ** | |||||||
10875798-T-G | ** | |||||||
10869417-C-A | ** | |||||||
10864383-C-T | ** | |||||||
10859522-T-G | ** | |||||||
10844204-A-C | ** | |||||||
10841989-C-A | ** | |||||||
10841959-C-A | ** | |||||||
10841686-C-A | ** | |||||||
10889187-A-C | ** | |||||||
10823336-T-G | ** | |||||||
10823254-CT-C | ** | |||||||
10815143-C-T | ** | |||||||
10815104-C-T | ** | |||||||
10815103-C-G | ** | |||||||
10804003-C-G | ** | |||||||
10785015-C-A | ** | |||||||
10781275-ATTCTATTC-A | ** | |||||||
10776127-T-A | ** | |||||||
10769846-C-A | ** | |||||||
10765861-C-A | ** | |||||||
10760747-C-CCGCTT | ** | |||||||
10758032-C-G | ** | |||||||
13726449-T-G | 11570773-T-G | ** | ||||||
10889183-C-A | ** | |||||||
10900841-C-G | ** | |||||||
11032511-T-G | ** | |||||||
10996798-C-A | ** | |||||||
16007002-C-T | 13895122-C-T | ** | ||||||
11027051-C-A | ** | |||||||
11021326-T-G | ** | |||||||
11020774-C-A | ** | |||||||
11017286-A-T | ** | |||||||
11000323-G-A | ** | |||||||
11000311-C-A | ** | |||||||
11000309-C-A | ** | |||||||
11000296-A-G | ** | |||||||
11000289-G-C | ** | |||||||
11000279-T-C | ** | |||||||
11000270-G-C | FT358475 | ** | ||||||
10997704-C-A | ** | |||||||
10990103-C-A | ** | |||||||
10900851-T-TTCTAG | ** | |||||||
10990086-T-A | ** | |||||||
10990078-CAACAC-A | ** | |||||||
10987431-T-G | ** | |||||||
10986854-T-G | ** | |||||||
10976931-T-G | ** | |||||||
10976685-C-A | ** | |||||||
10952884-A-C | ** | |||||||
10946032-T-A | ** | |||||||
10941092-A-T | ** | |||||||
10937442-T-A | ** | |||||||
10918986-G-C | ** | |||||||
10902179-C-T | FT278573 | ** | ||||||
10902156-T-C | ** | |||||||
10902154-C-T | ** | |||||||
15976536-ATTTAAACTTCATT-A | 13864656-ATTTAAACTTCATT-A | ** | ||||||
16063191-C-G | 13951311-C-G | ** | ||||||
16007037-G-T | 13895157-G-T | ** | ||||||
22335185-A-T | 20173299-A-T | DYZ19 | ** | |||||
23952803-A-T | 21806656-A-T | ** | ||||||
21780485-CTT-C | ** | |||||||
23579314-T-G | 21417428-T-G | ** | ||||||
23465731-C-A | 21303845-C-A | ** | ||||||
23447470-A-T | 21285584-A-T | ** | ||||||
23199882-A-C | 21037996-A-C | ** | ||||||
23199839-A-T | 21037953-A-T | ** | ||||||
23143019-ATTTTGATT-A | 20981133-ATTTTGATT-A | ** | ||||||
23065197-A-C | 20903311-A-C | ** | ||||||
23007964-T-A | 20846078-T-A | ** | ||||||
22811852-A-C | 20649966-A-C | ** | ||||||
22335188-G-A | 20173302-G-A | DYZ19 | ** | |||||
22335186-A-C | 20173300-A-C | DYZ19 | ** | |||||
22325323-C-A | 20163437-C-A | DYZ19 | ** | |||||
24518375-A-T | 22372228-A-T | ** | ||||||
22211934-C-A | 20050048-C-A | ** | ||||||
22211901-G-A | 20050015-G-A | ** | ||||||
22188965-C-A | 20027079-C-A | ** | ||||||
21697170-C-G | 19535284-C-G | ** | ||||||
21678101-A-T | 19516215-A-T | ** | ||||||
21669938-G-T | 19508052-G-T | ** | ||||||
21624553-C-A | 19462667-C-A | ** | ||||||
21588188-C-T | 19426302-C-T | ** | ||||||
21575017-G-T | 19413131-G-T | ** | ||||||
21468038-A-G | 19306152-A-G | ** | ||||||
21315116-A-C | 19153230-A-C | ** | ||||||
21201323-T-C | 19039437-T-C | ** | ||||||
21095810-C-A | 18933924-C-A | ** | ||||||
20579321-CCA-C | 18417435-CCA-C | P5_Dst | ** | |||||
24432872-G-T | 22286725-G-T | ** | ||||||
24518391-C-A | 22372244-C-A | ** | ||||||
20221507-A-G | 18059621-A-G | P5_Dst | ** | |||||
28732804-C-A | 26586657-C-A | ** | ||||||
56845445-A-T | ** | |||||||
56840994-A-T | ** | |||||||
56840977-A-T | ** | |||||||
56840946-AG-A | ** | |||||||
56839954-AG-A | ** | |||||||
58986101-A-T | 56839954-A-T | ** | ||||||
56839953-C-T | ** | |||||||
56839273-G-T | ** | |||||||
56835654-A-T | ** | |||||||
56822489-C-A | ** | |||||||
28819313-T-G | 26673166-T-G | ** | ||||||
28818363-G-T | 26672216-G-T | ** | ||||||
28794221-T-A | 26648074-T-A | ** | ||||||
28741151-T-G | 26595004-T-G | ** | ||||||
28625932-A-T | 26479785-A-T | ** | ||||||
24884162-C-A | 22738015-C-A | g1 | ** | |||||
28612067-C-A | 26465920-C-A | ** | ||||||
28588278-A-C | 26442131-A-C | ** | ||||||
28547407-C-A | 26401260-C-A | ** | ||||||
28518963-A-G | 26372816-A-G | ** | ||||||
28499426-C-A | 26353279-C-A | ** | ||||||
27499346-C-A | 25353199-C-A | P1_Y2 | ** | |||||
26366358-G-T | 24220211-G-T | P1_Y1 | ** | |||||
26024556-T-TA | 23878409-T-TA | P1_Y1 | ** | |||||
26024469-T-A | 23878322-T-A | P1_Y1 | ** | |||||
26010342-GTT-G | 23864195-GTT-G | P1_Y1 | ** | |||||
25575684-G-T | 23429537-G-T | P1_gr1 | ** | |||||
25575683-A-T | 23429536-A-T | P1_gr1 | ** | |||||
25575670-A-T | 23429523-A-T | P1_gr1 | ** | |||||
25575664-C-A | 23429517-C-A | P1_gr1 | ** | |||||
20380004-G-T | 18218118-G-T | P5_Dst | ** | |||||
20221500-T-G | 18059614-T-G | P5_Dst | ** | |||||
10694087-T-G | ** | |||||||
17300632-A-T | 15188752-A-T | ** | ||||||
18071842-G-T | 15959962-G-T | ** | ||||||
17994874-CAAAAAA-C | 15882994-CAAAAAA-C | P7_Prx | 39×A | ** | ||||
17955824-C-A | 15843944-C-A | ** | ||||||
17955810-C-A | 15843930-C-A | ** | ||||||
17955805-G-T | 15843925-G-T | ** | ||||||
17741369-T-A | 15629489-T-A | ** | ||||||
17741279-C-A | 15629399-C-A | F22063 | ** | |||||
17737870-A-C | 15625990-A-C | ** | ||||||
17512615-C-A | 15400735-C-A | ** | ||||||
17440769-T-A | 15328889-T-A | ** | ||||||
17338496-C-A | 15226616-C-A | ** | ||||||
17315520-C-A | 15203640-C-A | ** | ||||||
17300756-C-T | 15188876-C-T | ** | ||||||
17300746-G-A | 15188866-G-A | ** | ||||||
17086922-A-C | 14975042-A-C | ** | ||||||
18165656-C-A | 16053776-C-A | ** | ||||||
17038534-C-A | 14926654-C-A | ** | ||||||
16826574-A-T | 14714694-A-T | ** | ||||||
16559856-G-T | 14447976-G-T | ** | ||||||
16559836-G-T | 14447956-G-T | ** | ||||||
16484181-C-A | 14372301-C-A | FT68093 | ** | |||||
16424961-A-C | 14313081-A-C | ** | ||||||
16424833-A-C | 14312953-A-C | ** | ||||||
16411402-T-A | 14299522-T-A | ** | ||||||
16379181-C-A | 14267301-C-A | ** | ||||||
16274053-C-A | 14162173-C-A | ** | ||||||
16273941-C-A | 14162061-C-A | ** | ||||||
16273498-T-A | 14161618-T-A | ** | ||||||
16245618-A-T | 14133738-A-T | ** | ||||||
16118884-C-A | 14007004-C-A | P8_Prx | ** | |||||
18165475-TA-T | 16053595-TA-T | ** | ||||||
18165668-A-C | 16053788-A-C | ** | ||||||
20221487-AAAAA-G | 18059601-AAAAA-G | P5_Dst | ** | |||||
19832924-G-T | 17721044-G-T | P5_Prx | ** | |||||
20221485-A-G | 18059599-A-G | P5_Dst | ** | |||||
20132701-A-AC | 18020821-A-AC | P5_Dst | ** | |||||
20067071-C-A | 17955191-C-A | P5_Dst | ** | |||||
20067000-C-A | 17955120-C-A | P5_Dst | ** | |||||
20066997-C-A | 17955117-C-A | P5_Dst | ** | |||||
20066993-C-A | 17955113-C-A | P5_Dst | ** | |||||
20035414-G-T | 17923534-G-T | P5_Prx | ** | |||||
20035411-T-A | 17923531-T-A | P5_Prx | ** | |||||
20035392-G-T | 17923512-G-T | P5_Prx | ** | |||||
20035389-G-T | 17923509-G-T | P5_Prx | ** | |||||
20035380-G-T | 17923500-G-T | P5_Prx | ** | |||||
20035371-G-T | 17923491-G-T | P5_Prx | ** | |||||
20035365-T-A | 17923485-T-A | P5_Prx | ** | |||||
19833008-G-T | 17721128-G-T | P5_Prx | ** | |||||
19827463-G-T | 17715583-G-T | P5_Prx | ** | |||||
18192045-G-T | 16080165-G-T | ** | ||||||
19517334-C-A | 17405454-C-A | ** | ||||||
19510133-A-C | 17398253-A-C | ** | ||||||
19155946-C-A | 17044066-C-A | ** | ||||||
19012472-A-C | 16900592-A-C | ** | ||||||
18844222-C-A | 16732342-C-A | ** | ||||||
18799907-G-T | 16688027-G-T | ** | ||||||
18703069-A-C | 16591189-A-C | ** | ||||||
18688374-C-A | 16576494-C-A | ** | ||||||
18511529-G-T | 16399649-G-T | P6_Dst | ** | |||||
18511175-G-T | 16399295-G-T | P6_Dst | ** | |||||
18470914-T-G | 16359034-T-G | P6_Dst | ** | |||||
18470899-A-T | 16359019-A-T | P6_Dst | ** | |||||
18370870-T-A | 16258990-T-A | P6_Prx | ** | |||||
18194431-A-T | 16082551-A-T | ** | ||||||
10747663-G-T | ** | |||||||
10757403-T-G | ** | |||||||
10684286-T-A | ** | |||||||
10841955-A-T | ** | |||||||
11000306-G-C | ** | |||||||
18071864-TA-T | 15959984-TA-T | 8×A | ** | |||||
5449380-C-A | 5581339-C-A | ** | ||||||
10797979-C-A | ** | |||||||
10797966-A-T | ** | |||||||
10744363-T-G | ** | |||||||
10744362-G-A | ** | |||||||
10744342-A-C | ** | |||||||
10744336-C-GG | ** | |||||||
23305698-T-G | 21143812-T-G | ** | ||||||
10902159-A-T | ** | |||||||
10744373-C-A | ** | |||||||
21316797-C-A | 19154911-C-A | ** | ||||||
18354133-GGAGA-G | 16242253-GGAGA-G | P6_Prx | 8×GA | ** | ||||
10684236-T-A | ** | |||||||
16205796-CTTTT-C | 14093916-CTTTT-C | 21×T | ** | |||||
10766380-C-A | ** | |||||||
56845028-G-T | ** | |||||||
10844215-T-C | ** | |||||||
6773806-T-A | 6905765-T-A | ** | ||||||
10809583-C-CCTCTCAAAAT | ** | |||||||
14926384-A-C | 12814449-A-C | ** | ||||||
18858611-G-GAA | 16746731-G-GAA | 14×A | ** | |||||
11036141-A-T | ** | |||||||
10776141-A-G | ** | |||||||
10744360-G-C | ** | |||||||
2795038-C-A | 2926997-C-A | ** | ||||||
10841969-C-T | ** | |||||||
10776129-C-A | ** | |||||||
22211864-C-A | 20049978-C-A | ** | ||||||
27792020-G-T | 25645873-G-T | P1_Y2 | ** | |||||
24884168-C-A | 22738021-C-A | g1 | 20×T | ** | ||||
20927063-C-CT | 18765177-C-CT | P4_Dst | 10×T | ** | ||||
28816051-G-T | 26669904-G-T | ** | ||||||
10784980-T-A | ** | |||||||
13556274-A-C | 11400598-A-C | ** | ||||||
56845037-T-G | ** | |||||||
10800600-C-T | ** | |||||||
3732630-C-A | 3864589-C-A | ** | ||||||
21084463-C-A | 18922577-C-A | ** | ||||||
6580073-C-T | 6712032-C-T | ** | ||||||
14431398-A-T | 12310671-A-T | ** | ||||||
10673967-C-A | ** | |||||||
18185613-C-A | 16073733-C-A | ** | ||||||
10841970-A-T | ** | |||||||
14380939-C-A | 12260235-C-A | ** | ||||||
10693086-C-A | ** | |||||||
18926905-G-T | 16815025-G-T | ** | ||||||
13929270-C-A | 11808564-C-A | ** | ||||||
13597327-C-A | 11441651-C-A | ** | ||||||
10815101-C-T | ** | |||||||
28794228-G-T | 26648081-G-T | ** | ||||||
28819303-G-T | 26673156-G-T | ** | ||||||
6167453-T-TA | 6299412-T-TA | IR3_Dst | ** | |||||
13726468-A-T | 11570792-A-T | ** | ||||||
28794243-C-A | 26648096-C-A | ** | ||||||
10841965-A-T | ** | |||||||
19510291-TG-T | 17398411-TG-T | ** | ||||||
8333620-TCTC-T | 8465579-TCTC-T | ** | ||||||
16038974-T-G | 13927094-T-G | ** | ||||||
10744293-A-G | ** | |||||||
10784986-T-A | ** | |||||||
10809564-C-G | ** | |||||||
11035639-G-C | ** | |||||||
10799570-C-T | ** | |||||||
10799544-C-CCATGG | ** | |||||||
10835483-T-A | ** | |||||||
56839962-T-C | ** | |||||||
10877816-TC-T | ** | |||||||
11036127-T-C | ** | |||||||
22176295-C-A | 20014409-C-A | ** | ||||||
10938344-T-C | ** | |||||||
10794242-T-C | ** | |||||||
18926921-C-A | 16815041-C-A | ** | ||||||
10941177-A-T | ** | |||||||
5785688-G-C | 5917647-G-C | ** | ||||||
20579282-C-T | 18417396-C-T | P5_Dst | ** | |||||
13213957-A-C | 11058281-A-C | ** | ||||||
58979133-A-G | 56832986-A-G | ** | ||||||
28819293-G-T | 26673146-G-T | ** | ||||||
17317720-TCA-T | 15205840-TCA-T | 23×CA | ** | |||||
2775004-C-A | 2906963-C-A | ** | ||||||
17503368-T-C | 15391488-T-C | FT301655 | ** | |||||
10041022-T-A | 10203413-T-A | ** | ||||||
3016449-G-A | 3148408-G-A | ** | ||||||
22234761-A-C | 20072875-A-C | DYZ19 | ** | |||||
24363632-TC-T | 22217485-TC-T | ** | ||||||
13740761-G-T | 11585085-G-T | ** | ||||||
10941118-C-A | ** | |||||||
10744349-C-A | ** | |||||||
12675898-ATT-A | 27×T | ** | ||||||
11021322-T-C | ** | |||||||
22335163-A-G | 20173277-A-G | DYZ19 | ** | |||||
22335162-C-T | 20173276-C-T | DYZ19 | ** | |||||
13255825-C-A | 11100149-C-A | ** | ||||||
10744250-T-A | ** | |||||||
11030679-C-T | ** | |||||||
28816083-A-T | 26669936-A-T | ** | ||||||
10992602-C-A | ** | |||||||
13486868-A-G | 11331192-A-G | ** | ||||||
13726372-A-G | 11570696-A-G | ** | ||||||
56825979-G-T | ** | |||||||
10809590-A-C | ** | |||||||
11036067-C-A | ** | |||||||
11021291-G-C | ** | |||||||
28794225-T-A | 26648078-T-A | ** | ||||||
5421119-C-A | 5553078-C-A | ** | ||||||
7140513-C-A | 7272472-C-A | ** | ||||||
7699379-C-A | 7831338-C-A | ** | ||||||
20798749-GAAAA-G | 18636863-GAAAA-G | P4_Prx | 13×A | ** | ||||
15115453-AT-A | 13003540-AT-A | 9×T | ** | |||||
10956706-C-A | ** | |||||||
3250696-C-CTT | 3382655-C-CTT | 14×T | ** | |||||
10845688-T-TCTCAC | ** | |||||||
16938200-G-T | 14826320-G-T | ** | ||||||
10835526-C-T | ** | |||||||
16829274-G-GA | 14717394-G-GA | 10×A | ** | |||||
56851719-C-T | ** | |||||||
7008343-C-A | 7140302-C-A | ** | ||||||
3847296-C-A | 3979255-C-A | ** | ||||||
22325348-C-G | 20163462-C-G | DYZ19 | ** | |||||
9820596-G-A | 9982987-G-A | ** | ||||||
6514327-T-G | 6646286-T-G | ** | ||||||
7174452-C-A | 7306411-C-A | ** | ||||||
7166151-C-T | 7298110-C-T | ** | ||||||
7140662-T-G | 7272621-T-G | ** | ||||||
7094462-C-A | 7226421-C-A | ** | ||||||
7094401-C-A | 7226360-C-A | ** | ||||||
7085541-C-G | 7217500-C-G | ** | ||||||
7063616-C-A | 7195575-C-A | ** | ||||||
7033438-A-C | 7165397-A-C | ** | ||||||
6892056-T-G | 7024015-T-G | ** | ||||||
6799168-A-T | 6931127-A-T | ** | ||||||
6642296-C-A | 6774255-C-A | ** | ||||||
6626574-C-A | 6758533-C-A | ** | ||||||
6626561-G-A | 6758520-G-A | ** | ||||||
6478650-A-G | 6610609-A-G | ** | ||||||
7299127-C-A | 7431086-C-A | ** | ||||||
6421468-A-C | 6553427-A-C | ** | ||||||
6403183-T-A | 6535142-T-A | ** | ||||||
6403182-G-T | 6535141-G-T | ** | ||||||
6403173-G-C | 6535132-G-C | ** | ||||||
6369061-G-T | 6501020-G-T | ** | ||||||
6368642-A-C | 6500601-A-C | ** | ||||||
6240906-A-C | 6372865-A-C | IR3_Dst | ** | |||||
6240899-A-T | 6372858-A-T | IR3_Dst | ** | |||||
6240871-T-G | 6372830-T-G | IR3_Dst | ** | |||||
6240838-A-T | 6372797-A-T | IR3_Dst | ** | |||||
6124051-C-A | 6256010-C-A | ** | ||||||
6029142-T-A | 6161101-T-A | ** | ||||||
6029106-C-A | 6161065-C-A | ** | ||||||
7223067-C-A | 7355026-C-A | ** | ||||||
7338160-T-A | 7470119-T-A | ** | ||||||
6004464-G-T | 6136423-G-T | ** | ||||||
9832422-C-A | 9994813-C-A | ** | ||||||
10668996-C-A | ** | |||||||
10668330-T-TAAGTCACCCC | ** | |||||||
10666873-C-A | ** | |||||||
10666408-C-A | ** | |||||||
10663236-C-A | ** | |||||||
10651487-C-A | ** | |||||||
10070087-C-A | 10232478-C-A | ** | ||||||
10040960-T-A | 10203351-T-A | ** | ||||||
9977894-C-A | 10140285-C-A | ** | ||||||
9962603-T-A | 10124994-T-A | ** | ||||||
9957928-G-T | 10120319-G-T | ** | ||||||
9942622-T-A | 10105013-T-A | ** | ||||||
9934821-C-A | 10097212-C-A | ** | ||||||
9820603-A-T | 9982994-A-T | ** | ||||||
7369774-T-C | 7501733-T-C | ** | ||||||
9310473-T-A | 9472864-T-A | ** | ||||||
8736502-C-G | 8868461-C-G | ** | ||||||
8290909-T-A | 8422868-T-A | ** | ||||||
8274012-TTTTTA-T | 8405971-TTTTTA-T | ** | ||||||
8230546-C-A | 8362505-C-A | ** | ||||||
8080426-C-A | 8212385-C-A | ** | ||||||
7939499-A-T | 8071458-A-T | ** | ||||||
7894774-A-C | 8026733-A-C | ** | ||||||
7710684-T-A | 7842643-T-A | ** | ||||||
7664430-C-A | 7796389-C-A | ** | ||||||
7572912-T-G | 7704871-T-G | ** | ||||||
7541424-C-G | 7673383-C-G | ** | ||||||
7501437-A-G | 7633396-A-G | IR1_L | ** | |||||
6004481-CCATCTACTGCA-C | 6136440-CCATCTACTGCA-C | ** | ||||||
56848021-C-A | ** | |||||||
5851518-C-A | 5983477-C-A | ** | ||||||
3603394-T-G | 3735353-T-G | ** | ||||||
3275640-T-G | 3407599-T-G | ** | ||||||
4142449-A-C | 4274408-A-C | ** | ||||||
4065307-T-A | 4197266-T-A | ** | ||||||
4049687-C-A | 4181646-C-A | ** | ||||||
2812828-T-A | 2944787-T-A | ** | ||||||
3865523-T-G | 3997482-T-G | ** | ||||||
2885746-C-A | 3017705-C-A | ** | ||||||
3836900-T-A | 3968859-T-A | ** | ||||||
3092700-A-T | 3224659-A-T | ** | ||||||
3535873-T-G | 3667832-T-G | ** | ||||||
4160677-C-A | 4292636-C-A | ** | ||||||
3421257-C-A | 3553216-C-A | ** | ||||||
5829627-T-G | 5961586-T-G | ** | ||||||
3397208-G-T | 3529167-G-T | ** | ||||||
3385755-C-A | 3517714-C-A | ** | ||||||
3251899-A-T | 3383858-A-T | ** | ||||||
3346331-C-A | 3478290-C-A | ** | ||||||
3329162-C-A | 3461121-C-A | ** | ||||||
3329081-G-T | 3461040-G-T | ** | ||||||
3321313-C-A | 3453272-C-A | ** | ||||||
3275695-G-T | 3407654-G-T | ** | ||||||
2759488-C-A | 2891447-C-A | ** | ||||||
2785205-A-T | 2917164-A-T | ** | ||||||
4179272-A-G | 4311231-A-G | ** | ||||||
9733727-G-T | 9896118-G-T | BY28605 | IR3_Prx | ** | ||||
5797680-C-A | 5929639-C-A | ** | ||||||
5637037-A-C | 5768996-A-C | ** | ||||||
56845031-C-G | ** | |||||||
5270282-TC-T | 5402241-TC-T | ** | ||||||
56845052-G-C | ** | |||||||
56845063-G-C | ** | |||||||
56845090-T-G | ** | |||||||
10758001-A-T | ** | |||||||
4968211-T-C | 5100170-T-C | ** | ||||||
4942966-C-A | 5074925-C-A | ** | ||||||
11035646-T-C | ** | |||||||
17338500-C-A | 15226620-C-A | ** | ||||||
4370521-C-A | 4502480-C-A | ** | ||||||
10987671-T-G | ** | |||||||
4201587-A-G | 4333546-A-G | ** | ||||||
4208303-A-T | 4340262-A-T | ** | ||||||
4263812-G-T | 4395771-G-T | ** | ||||||
4223474-T-A | 4355433-T-A | ** | ||||||
4559681-G-T | 4691640-G-T | ** | ||||||
4925309-G-T | 5057268-G-T | ** | ||||||
3261349-G-T | 3393308-G-T | ** | ||||||
27521944-C-A | 25375797-C-A | P1_Y2 | *** | |||||
10799534-C-A,T | *** | |||||||
10971926-C-G | BY27100 | *** | ||||||
10657380-C-T | *** | |||||||
8737669-C-A | 8869628-C-A | *** | ||||||
17278273-CGAAAGAAA-C,CGAAA | 15166393-CGAAAGAAA-C,CGAAA | 16×GAAA | *** | |||||
10807225-C-G | *** | |||||||
10877844-A-C | *** | |||||||
10877855-C-T | *** | |||||||
14774253-CTTTTTT-C | 12662322-CTTTTTT-C | 28×T | *** | |||||
10746965-TTCA-T,TCCC | *** | |||||||
10887983-A-G | *** | |||||||
21156831-GTTTT-G | 18994945-GTTTT-G | 19×T | *** | |||||
17051268-T-C | 14939388-T-C | *** | ||||||
10785288-C-CGGTTA | *** | |||||||
13811093-G-T | 11690387-G-T | *** | ||||||
16598984-CAAAAA-C | 14487104-CAAAAA-C | 25×A | *** | |||||
11022690-C-A | *** | |||||||
4995747-C-A | 5127706-C-A | *** | ||||||
11019428-C-G | *** | |||||||
10785308-C-G | *** | |||||||
10757982-T-C | *** | |||||||
23421043-ATT-A,ATTT | 21259157-ATT-A,ATTT | 22×T | *** | |||||
15045793-C-A | 12933883-C-A | *** | ||||||
18271018-G-GT,GTT | 16159138-G-GT,GTT | 17×T | *** | |||||
13468268-A-C | 11312592-A-C | *** | ||||||
6516385-TTCTGTCATC-T | 6648344-TTCTGTCATC-T | *** | ||||||
21077033-CA-C | 18915147-CA-C | *** | ||||||
10776523-A-T | *** | |||||||
6792628-CAAAA-C,CAAA | 6924587-CAAAA-C,CAAA | 18×A | *** | |||||
13212784-C-A | 11057108-C-A | *** | ||||||
56833711-TCCATG-T,TCCATT | *** | |||||||
6780901-G-T | 6912860-G-T | *** | ||||||
17323401-C-A | 15211521-C-A | *** | ||||||
5577118-CTT-C | 5709077-CTT-C | 12×T | *** | |||||
16786213-C-CTT | 14674333-C-CTT | 22×T | *** | |||||
3834872-GA-G | 3966831-GA-G | *** | ||||||
22768348-TA-T,TAA | 20606462-TA-T,TAA | 17×A | *** | |||||
2832784-C-A | 2964743-C-A | *** | ||||||
10888032-C-A | *** | |||||||
10887966-C-G | *** | |||||||
10755447-CATT-C,CATTCC | *** | |||||||
23596763-C-CT | 21434877-C-CT | 9×T | *** | |||||
10755453-TGT-T,TG | *** | |||||||
21175749-CAAAA-C | 19013863-CAAAA-C | 27×A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 642851 | 9828720 | 8031629 | 7915379 |
Used in age calculations | 9828720 | 8031629 | 7915379 |
Counts of SNPs | 4 | 4 |
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