Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > BY11744

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
284854
BigY3
284854
16163592-T-TA 14051712-T-TA P8_Dst 13×AA*
20665931-G-A 18504045-G-A P4_Prx A*
56855781-A-G A*
25553205-C-CT 23407058-C-CT P1_gr1 12×TA*
20405675-C-CT 18243789-C-CT P5_Dst 9×TA*
56858737-G-T A*
59017019-G-C 56870872-G-C A*
58973713-C-T 56827566-C-T A*
18451802-T-A 16339922-T-A P6_Dst A*
20500103-G-C 18338217-G-C P5_Dst A*
19679674-C-G 17567794-C-G P5_Prx A*
56858654-C-T A*
25908475-C-T 23762328-C-T P1_Y1 A*
4769066-T-C 4901025-T-C A*
9745432-A-G 9907823-A-G BY80734 ++
16794689-T-A 14682809-T-A BY110186 YY++
17865880-ATAG-A 15754000-ATAG-A **+
14101583-C-G 11980877-C-G BY93033 YY++
9121844-G-T 9284235-G-T BY78293 Y++
16872938-A-G 14761058-A-G BY110756 YY++
9940352-C-T 10102743-C-T BY82076 Y++
21493276-A-T 19331390-A-T BY133379 YY++
15874740-T-C 13762860-T-C BY104687 YY++
13454996-G-T 11299320-G-T BY85410 +**
22440841-C-A 20278955-C-A BY218913 DYZ19 +
19322384-A-G 17210504-A-G FT82129 YY**+
4302683-GATA-G 4434642-GATA-G **+
3545026-A-G 3676985-A-G BY57688 ++
6604587-T-A 6736546-T-A FT81712 +
14834318-T-C 12722385-T-C F19293 YY++
13602380-AGAAG-A 11446704-AGAAG-A 9×GAAG+*
10829005-C-G +
18958148-C-T 16846268-C-T YY++
3115452-G-A 3247411-G-A FT81135 +
10925438-C-A +
14215629-C-T 12094923-C-T FT81885 YY+
14532841-C-T 12421042-C-T Y+
6792019-TA-T 6923978-TA-T 11×A*
10795051-G-GCATTC ***
13489799-C-T 11334123-C-T *
21406053-A-AGAAG 19244167-A-AGAAG 8×GAAG**
3650113-C-T 3782072-C-T *
8141371-T-A 8273330-T-A YY*
3200263-CTGTGTGTGTGTGTG-C 3332222-CTGTGTGTGTGTGTG-C 15×TG*
17600397-A-G 15488517-A-G **
15967634-C-A 13855754-C-A **
16413700-C-A 14301820-C-A **
16261020-T-A 14149140-T-A **
16057202-C-A 13945322-C-A **
15971602-A-G 13859722-A-G **
17890655-C-A 15778775-C-A **
15951313-C-A 13839433-C-A **
16743001-C-A 14631121-C-A **
15742452-A-T 13630572-A-T **
18695889-G-T 16584009-G-T 8×T**
15718085-C-T 13606205-C-T **
15689998-A-G 13578118-A-G **
15510600-A-T 13398720-A-T **
17781613-T-G 15669733-T-G **
18606184-A-T 16494304-A-T **
17714010-C-A 15602130-C-A **
17159444-C-A 15047564-C-A **
17394587-C-A 15282707-C-A **
17374962-G-T 15263082-G-T **
15499361-C-A 13387481-C-A Y93949 **
17355505-T-A 15243625-T-A **
17280013-A-T 15168133-A-T **
17217574-C-A 15105694-C-A **
17051360-G-T 14939480-G-T **
16746229-G-A 14634349-G-A **
18189276-A-T 16077396-A-T **
17886479-A-C 15774599-A-C **
16855247-C-A 14743367-C-A **
17752013-C-A 15640133-C-A **
18183129-A-C 16071249-A-C **
18491618-C-A 16379738-C-A P6_Dst **
18589683-T-G 16477803-T-G **
21306617-AG-A 19144731-AG-A **
14454315-C-A 12333588-C-A **
15438845-T-C 13326965-T-C **
11034033-C-G **
13898760-T-G 11778054-T-G **
13856304-A-T 11735598-A-T **
11649014-G-T **
11643803-G-C **
13623485-G-C 11467809-G-C **
13453387-T-C 11297711-T-C **
13453369-C-G 11297693-C-G **
11034066-T-A **
11034057-T-C **
11034027-ATG-A **
13919556-T-C 11798850-T-C **
11034025-C-CTG **
11034016-T-A **
11034011-A-G **
11034007-G-A **
11034005-C-A **
11034000-CT-C **
11033996-C-CATTCGT **
11033981-G-C **
11027080-A-C **
13898844-A-C 11778138-A-C **
13946081-G-A 11825375-G-A **
15400436-C-A 13288556-C-A **
14673585-T-A 12561651-T-A **
15353524-A-C 13241643-A-C **
15280833-C-A 13168932-C-A **
15146322-C-A 13034409-C-A **
15127811-C-A 13015898-C-A **
14831758-C-A 12719825-C-A **
14823708-T-A 12711775-T-A **
14787780-G-A 12675850-G-A **
14715010-T-A 12603077-T-A **
14715009-T-G 12603076-T-G **
14512911-C-A 12401116-C-A **
13946875-C-A 11826169-C-A **
14501098-G-T 12389303-G-T **
18782417-C-A 16670537-C-A **
14416706-C-A 12296003-C-A **
14395878-A-C 12275174-A-C **
14391848-C-A 12271144-C-A **
14388656-A-C 12267952-A-C **
14388649-A-G 12267945-A-G **
14187113-G-T 12066407-G-T **
14029051-C-A 11908345-C-A **
18733460-GA-G 16621580-GA-G **
19527079-C-A 17415199-C-A **
18814953-G-A 16703073-G-A **
28679043-G-A 26532896-G-A **
56685626-T-A **
28792448-G-C 26646301-G-C **
28792441-T-A 26646294-T-A **
28792435-G-GT 26646288-G-GT **
28792431-T-A 26646284-T-A **
28792429-T-A 26646282-T-A **
28687452-T-G 26541305-T-G **
28679065-C-A 26532918-C-A **
28544863-C-A 26398716-C-A **
19839616-GA-G 17727736-GA-G P5_Prx 26×A**
28517228-C-A 26371081-C-A **
28462107-C-A 26315960-C-A **
28078317-A-AT 25932170-A-AT P1_Y2 **
27966832-A-T 25820685-A-T P1_Y2 **
27829290-C-A 25683143-C-A P1_Y2 **
27713588-C-T 25567441-C-T P1_Y2 **
27576083-G-A 25429936-G-A P1_Y2 **
26124496-G-A 23978349-G-A P1_Y1 **
25995071-G-C 23848924-G-C P1_Y1 **
56849848-G-T **
10914588-G-C **
24291336-C-A 22145189-C-A P3_t1 **
6338697-C-A 6470656-C-A IR3_Dst **
27832305-ATTTT-A 25686158-ATTTT-A P1_Y2 17×T**
26411990-GAA-G 24265843-GAA-G P1_Y1 10×A**
26411985-G-A 24265838-G-A P1_Y1 **
25592900-CTATATATA-C 23446753-CTATATATA-C P1_gr1 12×TA**
21124936-T-A 18963050-T-A **
15252057-A-G 13140143-A-G **
10914580-T-A **
9753969-G-T 9916360-G-T **
5066121-A-G 5198080-A-G **
19604803-C-A 17492923-C-A BY211858 P5_Prx **
22318796-G-C 20156910-G-C DYZ19 **
10914576-G-T **
19784878-CTTTT-C 17672998-CTTTT-C P5_Prx 16×T**
28055040-A-AC 25908893-A-AC P1_Y2 **
28055035-TG-T 25908888-TG-T P1_Y2 **
15252050-C-T 13140136-C-T BY100444 **
20108241-TA-T 17996361-TA-T P5_Dst **
6648613-C-CTT 6780572-C-CTT 27×T**
22318794-C-A 20156908-C-A BY217387 DYZ19 **
24404944-C-A 22258797-C-A **
24221481-C-A 22075334-C-A P3_b1 **
18942324-C-A 16830444-C-A **
19403970-C-A 17292090-C-A **
21092267-C-A 18930381-C-A **
20666441-A-C 18504555-A-C P4_Prx **
19682203-A-C 17570323-A-C P5_Prx **
19600580-G-T 17488700-G-T P5_Prx **
19530514-G-A 17418634-G-A **
11027013-T-C **
19507148-T-C 17395268-T-C **
19501568-T-C 17389688-T-C **
19318362-T-G 17206482-T-G **
21149582-G-GTTT 18987696-G-GTTT 27×T**
19300798-C-A 17188918-C-A **
19258972-C-A 17147092-C-A **
19203784-A-G 17091904-A-G **
19201035-C-A 17089155-C-A **
19144062-C-A 17032182-C-A **
19048035-G-A 16936155-G-A **
19044699-C-A 16932819-C-A **
18966157-A-T 16854277-A-T **
18951349-C-T 16839469-C-T **
21092272-A-C 18930386-A-C **
21153122-C-A 18991236-C-A **
24126881-G-T 21980734-G-T P3_b1 **
22155149-C-G 19993263-C-G **
23577191-C-A 21415305-C-A **
23523668-G-T 21361782-G-T **
23433614-A-T 21271728-A-T **
23391617-C-A 21229731-C-A **
23252809-C-A 21090923-C-A **
23089703-C-A 20927817-C-A **
22522797-C-A 20360911-C-A **
22176848-C-A 20014962-C-A **
22164433-A-T 20002547-A-T **
22122949-C-A 19961063-C-A **
21167330-A-G 19005444-A-G **
21963739-C-A 19801853-C-A FGC15908 **
21856590-G-T 19694704-G-T **
21555464-C-A 19393578-C-A **
21505669-C-A 19343783-C-A **
21491017-C-A 19329131-C-A **
21394429-G-A 19232543-G-A **
21368889-C-A 19207003-C-A **
21283011-C-A 19121125-C-A **
21222087-C-A 19060201-C-A **
11027060-ATTCCT-A **
12095-T-C **
11027008-C-A **
5107716-C-A 5239675-C-A **
6090768-T-A 6222727-T-A **
5981187-G-T 6113146-G-T **
5956918-C-A 6088877-C-A FGC22456 **
5863711-G-T 5995670-G-T **
5785746-C-A 5917705-C-A **
5246817-C-A 5378776-C-A **
5230159-C-A 5362118-C-A **
5198498-G-T 5330457-G-T **
5198410-G-T 5330369-G-T **
4805022-C-T 4936981-C-T BY58337 **
6226053-T-G 6358012-T-G IR3_Dst **
4703026-G-T 4834985-G-T **
4568303-G-T 4700262-G-T **
4561413-G-T 4693372-G-T **
4545021-C-A 4676980-C-A **
4366616-C-A 4498575-C-A **
4213098-C-A 4345057-C-A **
3640877-C-T 3772836-C-T **
3535575-C-A 3667534-C-A **
3501019-C-A 3632978-C-A **
3426951-G-T 3558910-G-T **
6144555-C-A 6276514-C-A IR3_Dst **
6402481-C-A 6534440-C-A **
3273717-C-A 3405676-C-A **
7374518-A-C 7506477-A-C **
8002402-A-T 8134361-A-T **
8002370-A-T 8134329-A-T **
7986509-G-T 8118468-G-T **
7869010-T-A 8000969-T-A **
7780741-TAA-T 7912700-TAA-T 11×A**
7753020-C-A 7884979-C-A **
7626173-A-C 7758132-A-C **
7614015-C-A 7745974-C-A **
7578940-G-T 7710899-G-T **
7335803-C-A 7467762-C-A **
6409601-C-A 6541560-C-A **
7315265-C-G 7447224-C-G **
7311375-CTTCCTTAT-C 7443334-CTTCCTTAT-C **
7273014-C-A 7404973-C-A **
7187826-C-A 7319785-C-A **
11018687-C-A **
7020639-T-A 7152598-T-A **
6942670-T-C 7074629-T-C Y45498 **
6881313-G-T 7013272-G-T **
6671890-G-T 6803849-G-T **
6512285-C-A 6644244-C-A **
3334234-C-T 3466193-C-T **
3148563-A-G 3280522-A-G **
8117799-C-A 8249758-C-A **
5022128-GA-G 5154087-GA-G 11×A**
26010317-CAG-C 23864170-CAG-C P1_Y1 **
18255929-A-C 16144049-A-C **
10755702-T-C **
10656319-C-G **
10656311-A-C **
10656296-A-G **
10656292-A-C **
10656279-C-A **
8403272-CAAAA-C 8535231-CAAAA-C 28×A**
19007639-T-C 16895759-T-C FGC79238 **
16691408-C-A 14579528-C-A **
16929878-C-A 14817998-C-A **
21073407-G-T 18911521-G-T S2445 FGC3600 **
9753975-CT-C 9916366-CT-C 20×T**
21853778-T-A 19691892-T-A BY169953Z21076 YP4448 11×A****
18925314-T-G 16813434-T-G S782 **
16545461-G-A 14433581-G-A **
15421242-G-A 13309362-G-A M2321 CTS4135 **
6434941-AC-A 6566900-AC-A **
58883662-T-C 56707209-A-G **
58833996-T-C 56756875-A-G **
10971880-T-G **
21082242-AAAAG-A 18920356-AAAAG-A **
2986413-C-A 3118372-C-A **
10755710-T-A **
2915082-T-C 3047041-T-C **
2884773-A-T 3016732-A-T **
2806194-A-C 2938153-A-C **
2785216-C-A 2917175-C-A **
2668922-C-T 2800881-C-T **
10845672-A-ACTAC **
10763684-G-T **
10986383-CCATAT-C **
18831700-C-A 16719820-C-A **
5219336-A-T 5351295-A-T 19×GT**
18328806-TG-T 16216926-TG-T P6_Prx **
17158606-C-A 15046726-C-A **
8690465-C-T 8822424-C-T **
10780554-C-G **
10987768-C-T **
9927570-C-A 10089961-C-A **
15617963-C-A 13506083-C-A **
19600592-G-T 17488712-G-T P5_Prx **
8671298-C-A 8803257-C-A **
18880108-C-A 16768228-C-A **
18329043-CTTTT-C 16217163-CTTTT-C P6_Prx 17×T**
16876904-C-A 14765024-C-A **
8025031-A-AT 8156990-A-AT 9×T**
7160948-C-A 7292907-C-A **
8153545-G-T 8285504-G-T **
10672093-C-A **
10759986-A-ATTCAG **
10936243-A-T **
10936247-C-CATTCA **
10759984-C-A **
10751208-C-A **
10693099-C-A **
10690265-G-T **
10664327-C-A **
10914930-C-A **
10652104-T-C **
10943276-C-A **
10945228-CTCCAA-C **
10945240-C-A **
10652081-C-G **
10945243-C-T **
10652072-CAT-C **
10931801-C-A **
10759995-C-A **
10652070-T-TTC **
10912365-C-G **
10870461-T-A **
10868917-C-G **
10912345-C-A **
10847114-T-TCA **
10844843-C-A **
10912359-T-G **
10838483-C-A **
10833396-C-A **
10770924-C-A **
10814365-C-A **
10912370-T-C **
10912371-T-C **
10796692-C-CCCTGCAGTCGCATTG **
10796657-C-CGGAAG **
10790163-C-T **
8267223-C-A 8399182-C-A **
10912380-A-C **
10945276-C-A **
10652091-C-T **
10652062-T-C **
10986382-T-G **
9892653-C-A 10055044-C-A **
10949085-C-A **
9073911-C-A 9236302-C-A **
8912863-G-A 9044822-G-A **
8911525-G-T 9043484-G-T **
10986366-T-C **
10986370-A-G **
8790173-G-T 8922132-G-T **
9936465-G-T 10098856-G-T **
10986383-C-A **
8731736-G-T 8863695-G-T **
8690461-C-T 8822420-C-T FT67392 **
10992271-C-G **
11013968-T-C **
8673133-T-C 8805092-T-C **
8293894-T-TA 8425853-T-TA 8×A**
10974288-C-A **
9683422-T-C 9845813-T-C IR3_Prx **
10959760-C-A **
10026295-C-T 10188686-C-T 12×T**
10652038-A-C **
10652045-TG-T **
10956764-C-A **
10652029-T-A **
10971956-C-A **
10652049-C-A **
9995984-C-A 10158375-C-A **
10652052-CACAT-C **
13453434-G-C 11297758-G-C ***
8656020-C-CA 8787979-C-CA BY32362 10×A***
13489872-G-A 11334196-G-A ***
10885252-A-T ***
15604354-CAAAAAAA-C 13492474-CAAAAAAA-C 20×A***
13453198-CGGGTT-C,CGGATT 11297522-CGGGTT-C,CGGATT ***
3662166-TTA-T 3794125-TTA-T 9×TA***
15412771-CTT-C,CT 13300891-CTT-C,CT 15×T***
6915796-ATT-A,AT 7047755-ATT-A,AT 22×T***
56861812-CAAAAAAAAAA-C,CAAAAAAAAA 26×A***
23207965-CT-C 21046079-CT-C 10×T***
21698309-TAAAA-T,TAAA 19536423-TAAAA-T,TAAA 24×A***
13468194-T-G 11312518-T-G ***
4674732-T-C 4806691-T-C ***
14331131-C-CT 12210425-C-CT 25×T***
2649596-A-G 2781555-A-G ***
16305924-C-CA 14194044-C-CA 24×A***
13468298-A-T 11312622-A-T ***
10885263-T-C ***
13480439-A-G,T 11324763-A-G,T ***
17307841-A-C 15195961-A-C ***
10789358-T-C ***
18897849-TA-T 16785969-TA-T ***
10934875-T-C ***
13468297-A-T 11312621-A-T ***
18196490-CAAAA-C 16084610-CAAAA-C 26×A***
11655413-A-G ***
10954280-GCATTC-G ***
19155322-A-AC 17043442-A-AC ***
10977110-C-A ***
4251033-CTTTTTT-C,CTTTT 4382992-CTTTTTT-C,CTTTT 24×T***
6024058-ATT-A 6156017-ATT-A 14×T***
10821869-T-TTCCAC ***
14329614-C-A 12208908-C-A ***
23475890-CTAAATTGTAT-C 21314004-CTAAATTGTAT-C ***
20104255-GGGA-G 17992375-GGGA-G P5_Dst ***
18973000-C-A 16861120-C-A ***
5976868-G-T 6108827-G-T ***
15682240-C-A 13570360-C-A ***
6012853-C-A 6144812-C-A ***
15696758-C-A 13584878-C-A ***
6384201-G-T 6516160-G-T ***
15740554-C-A 13628674-C-A ***
19518276-T-TAAAAA 17406396-T-TAAAAA 16×A***
19477811-A-C 17365931-A-C ***
6942586-G-A 7074545-G-A ***
16253843-AAT-A 14141963-AAT-A ***
16264910-T-C 14153030-T-C ***
7359093-C-A 7491052-C-A ***
7391088-A-G 7523047-A-G ***
15439046-C-A 13327166-C-A ***
18832824-C-A 16720944-C-A ***
16938752-C-A 14826872-C-A ***
7854715-G-A 7986674-G-A ***
18693960-C-A 16582080-C-A ***
18665072-AT-A 16553192-AT-A ***
18654624-C-A 16542744-C-A ***
7974408-C-A 8106367-C-A ***
7975858-C-A 8107817-C-A ***
18109358-TAA-T,TAAA 15997478-TAA-T,TAAA 23×A***
18108509-C-A 15996629-C-A ***
18037000-GA-G 15925120-GA-G 10×A***
8013496-C-A 8145455-C-A ***
8042534-C-A 8174493-C-A ***
15588715-CA-C,CAA 13476835-CA-C,CAA 14×A***
21408178-C-A 19246292-C-A ***
10868936-C-A ***
14825928-C-T 12713995-C-T ***
28661450-A-G 26515303-A-G ***
14392735-CTTTTT-C 12272031-CTTTTT-C 17×T***
10851136-A-T ***
2773691-TAAAAAAAA-T,TAAAAAA 2905650-TAAAAAAAA-T,TAAAAAA 19×A***
14495615-C-A 12383812-C-A ***
24459328-G-T 22313181-G-T ***
24417197-C-A 22271050-C-A ***
14563620-C-A 12451820-C-A ***
3122750-C-T 3254709-C-T ***
14597694-C-A 12485894-C-A ***
23463561-C-A 21301675-C-A ***
23440178-C-A 21278292-C-A ***
14771126-CTTT-C,CTT 12659195-CTTT-C,CTT 16×T***
22870795-A-G 20708909-A-G ***
21442991-C-A 19281105-C-A ***
22864827-A-G 20702941-A-G ***
22834586-T-C 20672700-T-C ***
22785560-C-A 20623674-C-A ***
14869530-C-A 12757600-C-A ***
22430131-C-A 20268245-C-A DYZ19 ***
22244973-C-A 20083087-C-A DYZ19 ***
4582193-C-A 4714152-C-A ***
15161175-TTTAGGTCC-T 13049261-TTTAGGTCC-T ***
21969679-C-A 19807793-C-A ***
15348201-C-A 13236320-C-A ***
21734446-G-A 19572560-G-A ***
21562289-C-A 19400403-C-A ***
5242521-T-C 5374480-T-C ***
13511687-G-T 11356011-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 284854901548973903767322256
Kit: 2848541475531192718968256259
Used in age calculations1475531192718968256259
Counts of SNPs1211
Variant counts last updated 2019-11-12 02:51:05.



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