Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z367/S255 > L20/S144 > Z46420 > Z291

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
13231374-A-G 11075698-A-G BY84753 +
14813293-A-G 12701364-A-G BY97736 YY+
8886448-C-A 9018407-C-A BY76639 Y+
9397794-G-A 9560185-G-A BY79216 YY+
9787062-C-G 9949453-C-G BY80989 Y+
9798951-C-T 9961342-C-T BY81091 YY+
9833518-T-C 9995909-T-C Y65272 YY+
19046808-G-T 16934928-G-T BY125765 YY+
13700028-T-A 11544352-T-A BY89000 +
14498312-G-T 12386517-G-T BY96179 YY+
14579734-A-C 12467934-A-C BY96575 YY+
15393810-A-T 13281930-A-T BY159934 YY+
18413428-A-AT 16301548-A-AT P6_Gap +
15747230-T-C 13635350-T-C BY103795 YY+
15810456-A-T 13698576-A-T BY104245 YY+
16187153-G-C 14075273-G-C BY105829 YY+
17281839-T-C 15169959-T-C BY113453 YY+
17344176-C-A 15232296-C-A BY114014 YY+
17370465-G-A 15258585-G-A BY114266 YY+
17631788-G-C 15519908-G-C BY116257 YY+
17894572-G-C 15782692-G-C FT181257 YY+
18160373-G-A 16048493-G-A BY120482 YY+
8726674-G-C 8858633-G-C BY75466 YY+
8438007-C-T 8569966-C-T BY72754 YY+
7767974-G-C 7899933-G-C BY67486 YY+
14571703-C-T 12459903-C-T FGC61434 YY+
24392958-T-C 22246811-T-C BY149552 Y+
22458366-G-A 20296480-G-A BY44379 DYZ19 +
24427877-G-A 22281730-G-A BY55542 Y+
19096853-G-GA 16984973-G-GA 8×A+
24449690-C-T 22303543-C-T BY150016 Y+
21970126-T-G 19808240-T-G BY136718 YY+
2764073-G-T 2896032-G-T BY56325 YY+
2830500-A-T 2962459-A-T BY56712 YY+
2831929-A-T 2963888-A-T BY56725 YY+
21233085-T-G 19071199-T-G BY131303 YY+
6779940-C-T 6911899-C-T BY61250 YY+
6812546-G-A 6944505-G-A BY61474 YY+
7037191-T-C 7169150-T-C BY62965 YY+
7989122-G-A 8121081-G-A V1556 YY+
17515485-G-T 15403605-G-T **
2669716-C-A 2801675-C-A **
14635645-C-A 12523714-C-A **
13707801-C-T 11552125-C-T BY31580 **
17515403-T-C 15403523-T-C PR2538 **
13707803-A-G 11552127-A-G **
22316968-G-T 20155082-G-T ZS4628 DYZ19 ***
25146297-C-T 23000150-C-T g1 ***
19881759-T-A 17769879-T-A P5_Prx ***
25872235-G-A 23726088-G-A P1_Y1 ***
18718202-TAA-T,TA 16606322-TAA-T,TA 12×A***
22226036-C-T 20064150-C-T BY3229BY3229 DYZ19 ***
18360859-G-A 16248979-G-A P6_Prx ***
7971505-C-T 8103464-C-T ***
7101405-C-A 7233364-C-A ***
6266937-T-C 6398896-T-C IR3_Dst ***
3717952-A-G 3849911-A-G FT275830 ***
13686857-G-GAATT 11531181-G-GAATT ***
13477733-C-T 11322057-C-T FGC74782 BY29826 ***
13844879-G-T 11724173-G-T ***
13704114-C-CAATGG 11548438-C-CAATGG ***
10024186-TCC-T 10186577-TCC-T ***
26280578-G-A 24134431-G-A P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 2679551028319474075877476058
Used in age calculations1028319474075877476058
Counts of SNPs3134
Variant counts last updated 2022-07-25 03:21:16.

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