Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > Z251/S470 > Z16943 > A6077 > Y32361 > b38:4872574-A-C

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B108900
BigY2
B108900
18369795-T-C 16257915-T-C P6_Prx A*
23725396-C-T 21563510-C-T ***A*
20107296-T-A 17995416-T-A P5_Dst A*
20107329-C-T 17995449-C-T P5_Dst A*
20296150-A-G 18134264-A-G P5_Dst A*
20312772-G-A 18150886-G-A P5_Dst A*
20314417-G-T 18152531-G-T P5_Dst A*
26329518-C-T 24183371-C-T P1_Y1 ***A*
20314506-G-T 18152620-G-T P5_Dst A*
20331371-G-T 18169485-G-T P5_Dst A*
24273876-G-A 22127729-G-A P3_b1 ***A*
20418868-G-T 18256982-G-T P5_Dst A*
20446446-C-T 18284560-C-T P5_Dst A*
20332031-G-A 18170145-G-A P5_Dst A*
20446460-T-TG 18284574-T-TG P5_Dst 8×GA*
20446588-C-A 18284702-C-A P5_Dst A*
20460409-T-G 18298523-T-G P5_Dst A*
20460417-A-T 18298531-A-T P5_Dst A*
20460428-A-T 18298542-A-T P5_Dst 17×TA*
20462089-C-A 18300203-C-A P5_Dst A*
20481198-T-TTTA 18319312-T-TTTA P5_Dst A*
20510152-A-T 18348266-A-T P5_Dst A*
20554212-C-T 18392326-C-T P5_Dst A*
20592284-A-AG 18430398-A-AG P5_Dst A*
19987669-C-G 17875789-C-G P5_Prx A*
19938605-T-C 17826725-T-C P5_Prx A*
22310165-C-A 20148279-C-A DYZ19 ***A*
18429196-C-A 16317316-C-A P6_Dst 17×AA*
18369792-G-A 16257912-G-A P6_Prx A*
19744987-A-T 17633107-A-T P5_Prx A*
20711568-C-T 18549682-C-T P4_Prx A*
24295364-T-TAC 22149217-T-TAC P3_t1 9×ACA*
20842603-G-T 18680717-G-T P4_Dst A*
16150347-T-A 14038467-T-A P8_Dst A*
20432787-C-A 18270901-C-A P5_Dst A*
18301819-G-A 16189939-G-A P6_Prx A*
18316602-A-G 16204722-A-G P6_Prx A*
18325701-A-G 16213821-A-G P6_Prx 27×TA*
18457071-G-T 16345191-G-T P6_Dst A*
19744991-A-T 17633111-A-T P5_Prx 23×TA*
18479764-G-T 16367884-G-T P6_Dst A*
18501742-G-T 16389862-G-T P6_Dst A*
18516599-G-T 16404719-G-T P6_Dst A*
20685153-C-A 18523267-C-A P4_Prx A*
18524871-G-T 16412991-G-T P6_Dst A*
20950604-C-A 18788718-C-A P4_Dst A*
18534325-C-A 16422445-C-A P6_Dst A*
13687042-C-A 11531366-C-A A*
19597011-C-A 17485131-C-A P5_Prx YA*
19713213-C-T 17601333-C-T P5_Prx A*
20670421-A-T 18508535-A-T P4_Prx A*
26124711-G-A 23978564-G-A P1_Y1 ***A*
20737799-C-A 18575913-C-A P4_Prx A*
20859068-T-A 18697182-T-A P4_Dst A*
20801783-T-G 18639897-T-G P4_Prx A*
20910691-A-T 18748805-A-T P4_Dst A*
20932610-G-A 18770724-G-A P4_Dst A*
20426333-C-A 18264447-C-A P5_Dst A*
19738990-A-AT 17627110-A-AT P5_Prx 8×T***A*
19868466-G-A 17756586-G-A P5_Prx ***A*
20420954-G-A 18259068-G-A P5_Dst A*
19922435-T-C 17810555-T-C P5_Prx ***A*
20714344-G-A 18552458-G-A P4_Prx ***A*
20998800-T-A 18836914-T-A P4_Dst YA*
16146473-A-AAAAG 14034593-A-AAAAG P8_Dst A*
22304446-A-G 20142560-A-G DYZ19 ***A*
19693500-C-T 17581620-C-T P5_Prx A*
20778907-C-A 18617021-C-A P4_Prx A*
22265630-G-A 20103744-G-A DYZ19 ***A*
22291220-G-A 20129334-G-A BY14783 DYZ19 ***A*
20764275-G-T 18602389-G-T P4_Prx A*
6148727-C-A 6280686-C-A IR3_Dst 17×AA*
14487711-ATAGG-A 12366980-ATAGG-A 8×TAGG+*
7220039-T-C 7351998-T-C Y83637 YY++
7730097-C-G 7862056-C-G Y84791 YY++
8023370-A-C 8155329-A-C Y85629 YY++
8841854-G-A 8973813-G-A Y88149 YY++
22486113-G-A 20324227-G-A 2823700-T-CBY17930 DYZ19 ++
13703809-T-A 11548133-T-A BY89095 ***+
17637159-C-G 15525279-C-G Y99780 YY++
14653079-C-T 12541144-C-T F19152 YY++
21410434-G-A 19248548-G-A Y106406 YY++
21562429-G-C 19400543-G-C Y106901 YY++
21236625-G-A 19074739-G-A Y105803 YY++
21165112-G-C 19003226-G-C Y105599 YY++
24008262-A-G 21862115-A-G Y112651 Y++
24933621-C-T 22787474-C-T g1 +
21252983-T-C 19091097-T-C Y105855 YY++
16897746-C-A 14785866-C-A Y97619 YY++
14907894-G-A 12795961-G-A Y92503 YY++
14861814-A-G 12749880-A-G Y92369 YY++
14861813-T-C 12749879-T-C Y92368 YY++
22302400-C-T 20140514-C-T DYZ19 ****
13838508-A-C 11717802-A-C FT116243 *
6349896-T-C 6481855-T-C BY59700 ****
22269284-G-T 20107398-G-T DYZ19 *
10858133-C-A **
10839551-G-T **
10830234-C-A **
10858151-T-A **
10782404-C-T **
10819616-C-A **
5323083-G-T 5455042-G-T **
10809102-C-A **
10786510-C-A **
10694180-C-G **
10771761-C-T **
10744317-C-G **
5831944-C-A 5963903-C-A **
10660446-T-A **
56841247-G-A **
9542198-CTTTCT-C 9704589-CTTTCT-C IR3_Prx **
28576277-G-T 26430130-G-T **
56857984-A-G **
6412663-C-T 6544622-C-T **
6034309-G-T 6166268-G-T **
5515114-G-T 5647073-G-T **
10858166-T-G **
13555569-C-A 11399893-C-A **
10874353-G-C **
16605300-C-A 14493420-C-A **
20865526-TA-T 18703640-TA-T P4_Dst **
4937128-C-A 5069087-C-A **
18712909-A-G 16601029-A-G FT118419 **
21243248-C-A 19081362-C-A **
21747068-C-A 19585182-C-A **
21794905-G-A 19633019-G-A **
22465914-G-A 20304028-G-A DYZ19 **
17779399-T-A 15667519-T-A **
17733434-CATTAGGA-C 15621554-CATTAGGA-C **
16865983-G-A 14754103-G-A **
22467590-C-A 20305704-C-A DYZ19 **
10875819-GC-G **
14123426-C-A 12002720-C-A **
14101276-T-A 11980570-T-A **
14051829-G-T 11931123-G-T FT123952 **
13903316-A-C 11782610-A-C **
13593236-C-A 11437560-C-A **
13471989-G-C 11316313-G-C **
10988308-G-T **
10942739-C-A **
10913974-G-T **
10886691-C-A **
5207850-G-T 5339809-G-T **
35724-C-T **
4749036-C-A 4880995-C-A **
10847094-A-T **
10858165-C-T **
10858163-C-T **
10858159-A-T **
10858145-T-C **
10753547-T-A **
11034860-A-T **
10795995-G-A **
18365662-C-T 16253782-C-T P6_Prx **
11034894-C-T **
8218193-G-T 8350152-G-T M7206 **
11644654-C-A **
10847072-C-A **
4705574-T-C 4837533-T-C **
11034878-G-T **
26199601-ATATAT-A 24053454-ATATAT-A P1_Y1 **
10943084-C-T **
10943079-C-T **
10037659-C-A 10200050-C-A **
14635644-C-A 12523713-C-A **
11648890-C-A **
7990596-C-A 8122555-C-A **
10847113-C-A **
25395865-C-T 23249718-C-T P2_r2 **
16454717-C-A 14342837-C-A **
59000611-C-A 56854464-C-A **
5578332-G-A 5710291-G-A **
59000554-G-C 56854407-G-C **
22465910-T-G 20304024-T-G DYZ19 **
10858175-G-T **
10847055-C-T **
56845243-G-T **
3706771-A-C 3838730-A-C **
11037967-C-A **
10828772-G-A **
13865665-C-T 11744959-C-T FGC32651 **
11034831-T-G **
5683980-G-T 5815939-G-T **
10783884-C-T **
3671683-G-T 3803642-G-T **
22465905-T-G 20304019-T-G DYZ19 **
10783888-T-G **
4438478-G-T 4570437-G-T **
13855575-G-A 11734869-G-A **
3948815-G-T 4080774-G-T **
22465922-G-C 20304036-G-C BY50458 DYZ19 ******
2810391-AGA-A,AGG 2942350-AGA-A,AGG ***
22240347-G-A 20078461-G-A DYZ19 ***
22465933-T-C 20304047-T-C DYZ19 ***
22295474-G-T 20133588-G-T DYZ19 ***
22305607-AG-A 20143721-AG-A DYZ19 ***
22465931-C-A 20304045-C-A DYZ19 ***
22465932-T-A 20304046-T-A BY221629 DYZ19 ***
22360043-T-A 20198157-T-A DYZ19 ***
22368796-G-A 20206910-G-A DYZ19 ***
13458002-G-C 11302326-G-C ******
22451318-G-A 20289432-G-A DYZ19 ***
22368854-T-C 20206968-T-C DYZ19 ***
22368774-G-A 20206888-G-A DYZ19 ***
13453082-TGTG-T 11297406-TGTG-T ***
22468467-T-A 20306581-T-A DYZ19 ***
21491135-G-T 19329249-G-T ***
25096448-GGAAAGAAA-G,GGAAA 22950301-GGAAAGAAA-G,GGAAA g1 20×GAAA***
22468487-G-T 20306601-G-T DYZ19 ***
16119959-T-TTTTC,TTTTCTTTC 14008079-T-TTTTC,TTTTCTTTC P8_Prx 12×TTTC***
17196748-GTAGA-G 15084868-GTAGA-G ***
21979988-C-G 19818102-C-G ***
22023220-TTG-T,TTT 19861334-TTG-T,TTT ***
19486859-CTTTTT-C 17374979-CTTTTT-C 16×T***
22645631-C-CTA,CTATA 20483745-C-CTA,CTATA ***
13854347-C-A 11733641-C-A ***
28773647-C-A 26627500-C-A ***
56850991-TGATGT-T,TGATGG ***
22468469-T-G 20306583-T-G DYZ19 ***
8900957-A-AT 9032916-A-AT ***
22468491-C-A 20306605-C-A DYZ19 ***
16259183-C-A 14147303-C-A ***
11670575-A-G ***
13487602-CGCCTGGG-C 11331926-CGCCTGGG-C ***
2861533-TC-T 2993492-TC-T ***
9852681-C-A 10015072-C-A ***
14397869-C-A 12277165-C-A ***
15212369-T-C 13100455-T-C ***
15882073-TCAAAA-T,TAAAAA 13770193-TCAAAA-T,TAAAAA ***
16084095-T-G 13972215-T-G ***
11672600-A-G ***
16406883-C-T 14295003-C-T ***
10971991-C-A ***
17367999-C-T 15256119-C-T ***
18565230-C-A 16453350-C-A ***
14460033-C-A 12339306-C-A ***
13196454-C-A 11040778-C-A ***
22485945-T-G 20324059-T-G DYZ19 ***
10667020-A-T ***
24098934-G-A 21952787-G-A P3_b1 ***
25275651-A-G 23129504-A-G P2_r1 ***
13690269-C-A 11534593-C-A ***
27321545-T-G 25175398-T-G P1_g3 ***
28792584-G-C 26646437-G-C ***
14825814-A-T 12713881-A-T ***
9852817-A-G 10015208-A-G ***
16312067-G-A 14200187-G-A ***
3011717-C-A 3143676-C-A ***
16221604-C-A 14109724-C-A ***
16075975-C-A 13964095-C-A ***
14627377-C-A 12515445-C-A ***
3626521-G-T 3758480-G-T ***
56838506-C-A ***
10937370-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B1089001065472077428457830387
Kit: B108900972441378955067781532
Used in age calculations1065472078955067830387
Counts of SNPs1815
Variant counts last updated 2019-10-28 03:58:37.



Big Tree Main Page