Rogov
FGC: NUMH7Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC NUMH7 |
---|---|---|---|---|---|---|---|---|
6940516-G-A | 7072475-G-A | FGC8572 | Y | Y | + | |||
7507622-G-A | 7639581-G-A | FGC8577 | Y | + | ||||
13623297-C-T | 11467621-C-T | FGC8581 | + | |||||
14883859-G-A | 12771925-G-A | FGC8585 | Y | Y | + | |||
16009380-T-C | 13897500-T-C | FGC8588 | Y | + | ||||
28517942-G-A | 26371795-G-A | FGC8603 | + | |||||
17265701-C-T | 15153821-C-T | FGC8592 | Y | * | ||||
18818270-C-T | 16706390-C-T | FGC8595 | Y | * | ||||
18975680-A-G | 16863800-A-G | FGC8596 | Y | * | ||||
21450574-G-A | 19288688-G-A | FGC8598 | Y | Y | * | |||
22794483-C-CT | 20632597-C-CT | * | ||||||
7211965-A-C | 7343924-A-C | ** | ||||||
21376157-T-C | 19214271-T-C | ** | ||||||
3685702-T-A | 3817661-T-A | ** | ||||||
13324604-T-C | 11168928-T-C | ** | ||||||
13717009-A-G | 11561333-A-G | ** | ||||||
14165217-G-A | 12044511-G-A | ** | ||||||
19746077-G-GTATC | 17634197-G-GTATC | P5_Prx | 5×TATC | ** | ||||
58841040-G-C | 56749831-C-G | 4×CATTC | *** | |||||
22236745-T-C | 20074859-T-C | DYZ19 | *** | |||||
58843684-A-G | 56747187-T-C | *** | ||||||
22366506-CAA-GAG | 20204620-CAA-GAG | DYZ19 | *** | |||||
22421783-GC-CT | 20259897-GC-CT | DYZ19 | *** | |||||
13489820-TGGT-CGGC | 11334144-TGGT-CGGC | *** | ||||||
10033512-C-T | 10195903-C-T | *** | ||||||
27056034-T-C | 24909887-T-C | P1_r4 | *** | |||||
22421969-G-T | 20260083-G-T | DYZ19 | *** | |||||
9215444-G-T | 9377835-G-T | *** | ||||||
13484476-G-A | 11328800-G-A | *** | ||||||
22231785-A-T | 20069899-A-T | DYZ19 | *** | |||||
22263842-T-C | 20101956-T-C | BY214780 | DYZ19 | *** | ||||
58840716-T-C | 56750155-A-G | *** | ||||||
58848367-G-C | 56742504-C-G | *** | ||||||
19937284-G-GCCCCCCCCCCC | 17825404-G-GCCCCCCCCCCC | P5_Prx | 13×C | *** | ||||
22503401-AAC-CAG | 20341515-AAC-CAG | DYZ19 | *** | |||||
58903878-ATTCCTTTCCATTAAT-A | 56686973-TGGAAATTAATGGAAA-T | *** | ||||||
22236511-C-A | 20074625-C-A | DYZ19 | *** | |||||
22421683-T-A | 20259797-T-A | DYZ19 | *** | |||||
27637426-A-G | 25491279-A-G | P1_Y2 | *** | |||||
58840611-C-A | 56750260-G-T | *** | ||||||
58843791-T-A | 56747080-A-T | *** | ||||||
58848519-G-C | 56742352-C-G | *** | ||||||
58856239-T-C | 56734632-A-G | *** | ||||||
58868293-G-A | 56722578-C-T | *** | ||||||
13489029-TGCGC-CACGT | 11333353-TGCGC-CACGT | *** | ||||||
22319024-T-TC | 20157138-T-TC | DYZ19 | *** | |||||
58910658-GCATTCCATTC-G | 56680183-AAATGGAATGG-A | 5×CATTC | *** | |||||
22364847-T-G | 20202961-T-G | DYZ19 | *** | |||||
22292233-T-A | 20130347-T-A | DYZ19 | *** | |||||
22357635-G-T | 20195749-G-T | DYZ19 | *** | |||||
22420952-T-C | 20259066-T-C | DYZ19 | *** | |||||
22420975-C-G | 20259089-C-G | DYZ19 | *** | |||||
58838400-C-A | 56752471-G-T | *** | ||||||
58874519-T-C | 56716352-A-G | *** | ||||||
58874539-A-C | 56716332-T-G | *** | ||||||
13483584-AC-A | 11327908-AC-A | *** | ||||||
22341141-GTG-ATT | 20179255-GTG-ATT | DYZ19 | *** | |||||
22420995-TG-AT | 20259109-TG-AT | DYZ19 | *** | |||||
22367155-T-A | 20205269-T-A | DYZ19 | *** | |||||
22367160-G-T | 20205274-G-T | DYZ19 | *** | |||||
22367164-T-G | 20205278-T-G | DYZ19 | *** | |||||
58843797-A-T | 56747074-T-A | *** | ||||||
58848529-G-C | 56742342-C-G | *** | ||||||
58874924-A-C | 56715947-T-G | *** | ||||||
26152094-TCTC-CCTT | 24005947-TCTC-CCTT | P1_Y1 | *** | |||||
58848518-AG-TC | 56742352-CT-GA | *** | ||||||
22292968-A-G | 20131082-A-G | DYZ19 | *** | |||||
22245026-T-C | 20083140-T-C | DYZ19 | *** | |||||
22292969-T-A | 20131083-T-A | DYZ19 | *** | |||||
22491445-T-G | 20329559-T-G | DYZ19 | *** | |||||
58877109-G-C | 56713762-C-G | *** | ||||||
13460530-TC-CCT | 11304854-TC-CCT | *** | ||||||
27462490-C-A | 25316343-C-A | P1_Y2 | *** | |||||
13486126-T-C | 11330450-T-C | BY30135 | *** | |||||
13728253-A-T | 11572577-A-T | *** | ||||||
13728254-C-G | 11572578-C-G | *** | ||||||
22226618-A-C | 20064732-A-C | DYZ19 | *** | |||||
22292227-A-G | 20130341-A-G | DYZ19 | *** | |||||
58881418-G-A | 56709453-C-T | *** | ||||||
58838370-C-A | 56752501-G-T | *** | ||||||
20574448-C-T | 18412562-C-T | P5_Dst | *** | |||||
22504416-C-A | 20342530-C-A | DYZ19 | *** | |||||
28802798-T-G | 26656651-T-G | *** | ||||||
13486155-A-G | 11330479-A-G | *** | ||||||
58868288-A-C | 56722583-T-G | *** | ||||||
58831534-A-T | 56759337-T-A | *** | ||||||
58882545-T-G | 56708326-A-C | *** | ||||||
22360294-GGC-CGA | 20198408-GGC-CGA | DYZ19 | *** | |||||
28802746-TTCAAATTGCATA-ATGGAATGGAAAG | 26656599-TTCAAATTGCATA-ATGGAATGGAAAG | *** | ||||||
58848953-T-C | 56741918-A-G | *** | ||||||
58836578-T-A | 56754293-A-T | *** | ||||||
13110184-C-T | 10599670-C-T | *** | ||||||
21482757-C-T | 19320871-C-T | *** | ||||||
13110261-T-G | 10599747-T-G | *** | ||||||
58847206-T-A | 56743665-A-T | *** | ||||||
13476136-CAAGC-TAAGA | 11320460-CAAGC-TAAGA | *** | ||||||
10015025-A-G | 10177416-A-G | *** | ||||||
13728606-G-A | 11572930-G-A | *** | ||||||
13728612-C-T | 11572936-C-T | *** | ||||||
15885057-T-G | 13773177-T-G | *** | ||||||
20574360-G-A | 18412474-G-A | P5_Dst | *** | |||||
20574361-G-A | 18412475-G-A | P5_Dst | *** | |||||
22355178-C-G | 20193292-C-G | DYZ19 | *** | |||||
22297112-AGTTTG-TTTTT | 20135226-AGTTTG-TTTTT | DYZ19 | *** | |||||
20005659-A-T | 17893779-A-T | P5_Prx | *** | |||||
22292975-T-A | 20131089-T-A | DYZ19 | *** | |||||
22421550-A-T | 20259664-A-T | DYZ19 | *** | |||||
58865793-A-C | 56725078-T-G | *** | ||||||
8462064-C-CAAAA | 8594023-C-CAAAA | 26×A | *** | |||||
13110584-C-A | 10600070-C-A | *** | ||||||
22421675-A-T | 20259789-A-T | DYZ19 | *** | |||||
13465631-AGC-TGA | 11309955-AGC-TGA | *** | ||||||
8005623-T-C | 8137582-T-C | *** | ||||||
8005624-A-T | 8137583-A-T | *** | ||||||
20574943-TG-T | 18413057-TG-T | P5_Dst | *** | |||||
58865679-C-A | 56725192-G-T | *** | ||||||
58865656-G-T | 56725215-C-A | *** | ||||||
58877047-A-C | 56713824-T-G | *** | ||||||
58893216-C-A | 56697655-G-T | *** | ||||||
13734147-TC-GA | 11578471-TC-GA | *** | ||||||
22426444-T-G | 20264558-T-G | DYZ19 | *** | |||||
22504362-G-T | 20342476-G-T | DYZ19 | *** | |||||
59007959-C-CAAAAAAAA | 56861812-C-CAAAAAAAA | 26×A | *** | |||||
13110187-A-G | 10599673-A-G | *** | ||||||
58843685-G-C | 56747186-C-G | *** | ||||||
13648336-C-G | 11492660-C-G | 4×AATGG | *** | |||||
22244984-TA-GC | 20083098-TA-GC | DYZ19 | *** | |||||
22289731-TG-GA | 20127845-TG-GA | DYZ19 | *** | |||||
13734057-G-C | 11578381-G-C | *** | ||||||
58873038-T-C | 56717833-A-G | *** | ||||||
22366640-C-T | 20204754-C-T | DYZ19 | *** | |||||
58847152-G-A | 56743719-C-T | *** | ||||||
58847196-T-A | 56743675-A-T | *** | ||||||
13434927-A-C | 11279251-A-C | *** | ||||||
22355309-G-C | 20193423-G-C | DYZ19 | *** | |||||
58874533-T-C | 56716338-A-G | *** | ||||||
22361163-GT-TC | 20199277-GT-TC | DYZ19 | *** | |||||
20143886-N-A | 18032006-A-. | P5_Dst | *** | |||||
58828858-C-G | 56762013-G-C | *** | ||||||
58847150-C-T | 56743721-G-A | *** | ||||||
22292230-C-A | 20130344-C-A | DYZ19 | *** | |||||
22292962-T-G | 20131076-T-G | DYZ19 | *** | |||||
22292963-G-T | 20131077-G-T | DYZ19 | *** | |||||
22426441-A-T | 20264555-A-T | DYZ19 | *** | |||||
22426450-T-G | 20264564-T-G | DYZ19 | *** | |||||
58909253-G-T | 56681618-C-A | *** | ||||||
22292254-C-T | 20130368-C-T | DYZ19 | *** | |||||
22292259-G-T | 20130373-G-T | DYZ19 | *** | |||||
5815590-A-G | 5947549-A-G | *** | ||||||
13258092-T-C | 11102416-T-C | *** | ||||||
15278811-A-T | 13166905-A-T | *** | ||||||
18230822-G-T | 16118942-G-T | *** | ||||||
26834299-C-T | 24688152-C-T | P1_g2 | *** | |||||
58881117-T-C | 56709754-A-G | *** | ||||||
20462569-G-C | 18300683-G-C | P5_Dst | *** | |||||
20462571-GTATAAG-CT | 18300685-GTATAAG-CT | P5_Dst | *** | |||||
58874534-G-C | 56716337-C-G | *** | ||||||
26152094-T-C | 24005947-T-C | P1_Y1 | *** | |||||
9570727-T-G | 9733118-T-G | IR3_Prx | *** | |||||
9570733-G-A | 9733124-G-A | IR3_Prx | *** | |||||
9754157-A-T | 9916548-A-T | *** | ||||||
24535791-G-T | 22389644-G-T | P3_t2 | *** | |||||
58843676-G-A | 56747195-C-T | *** | ||||||
10006444-A-C | 10168835-A-C | *** | ||||||
13728417-A-T | 11572741-A-T | *** | ||||||
13482874-T-A | 11327198-T-A | *** | ||||||
27421392-C-T | 25275245-C-T | P1_g3 | *** | |||||
10033526-A-G | 10195917-A-G | S13018 | *** | |||||
13418645-T-TA | 11262969-T-TA | *** | ||||||
13206784-C-A | 11051108-C-A | 14×A | *** | |||||
22337546-C-T | 20175660-C-T | DYZ19 | *** | |||||
22344224-T-A | 20182338-T-A | DYZ19 | *** | |||||
13804794-CTCGTAT-ATCAAAG | 11684088-CTCGTAT-ATCAAAG | *** | ||||||
13110188-T-G | 10599674-T-G | *** | ||||||
25709386-G-GTTTTTTTTT | 23563239-G-GTTTTTTTTT | P1_b3 | 31×T | *** | ||||
19012969-A-C | 16901089-A-C | *** | ||||||
58837915-TCCATTTGATGCCATC-T | 56752936-CATGGGATGGCATCAA-C | *** | ||||||
13475731-T-G | 11320055-T-G | *** | ||||||
58893713-G-T | 56697158-C-A | *** | ||||||
22355142-GGT-AGG | 20193256-GGT-AGG | DYZ19 | *** | |||||
22355195-CAA-AAG | 20193309-CAA-AAG | DYZ19 | *** | |||||
21840735-C-T | 19678849-C-T | *** | ||||||
22491364-G-A | 20329478-G-A | DYZ19 | *** | |||||
58836589-G-T | 56754282-C-A | *** | ||||||
58836590-C-T | 56754281-G-A | 4×CCATT | *** | |||||
22421656-T-C | 20259770-T-C | DYZ19 | *** | |||||
22421661-C-T | 20259775-C-T | DYZ19 | *** | |||||
22421663-C-A | 20259777-C-A | DYZ19 | *** | |||||
22421685-C-A | 20259799-C-A | DYZ19 | *** | |||||
13203968-GACCACCCCGCCTC-AATGACGGTAT | 11048292-GACCACCCCGCCTC-AATGACGGTAT | *** | ||||||
22355106-GTTATG-TTTGTT | 20193220-GTTATG-TTTGTT | DYZ19 | *** | |||||
28120142-A-C | 25973995-A-C | P1_b4 | *** | |||||
7573145-C-A | 7705104-C-A | 22×A | *** | |||||
22364840-C-T | 20202954-C-T | DYZ19 | *** | |||||
7414305-G-A | 7546264-G-A | BY25523 | *** | |||||
22337491-C-T | 20175605-C-T | DYZ19 | *** | |||||
22491372-T-C | 20329486-T-C | DYZ19 | *** | |||||
13256068-GTG-TTA | 11100392-GTG-TTA | *** | ||||||
22359154-C-A | 20197268-C-A | DYZ19 | *** | |||||
13728657-GTGG-TTGT | 11572981-GTGG-TTGT | *** | ||||||
6216398-C-T | 6348357-C-T | IR3_Dst | *** | |||||
19098441-A-G | 16986561-A-G | *** | ||||||
22251587-CACTA-AACTT | 20089701-CACTA-AACTT | DYZ19 | *** | |||||
8724678-A-G | 8856637-A-G | *** | ||||||
13481775-C-A | 11326099-C-A | *** | ||||||
26500980-A-G | 24354833-A-G | P1_Y1 | *** | |||||
58893720-A-T | 56697151-T-A | *** | ||||||
2676836-T-A | 2808795-T-A | *** | ||||||
3902522-A-T | 4034481-A-T | *** | ||||||
4152225-T-A | 4284184-T-A | *** | ||||||
5065667-A-C | 5197626-A-C | *** | ||||||
5179977-G-A | 5311936-G-A | *** | ||||||
5555653-A-C | 5687612-A-C | *** | ||||||
5624078-A-G | 5756037-A-G | *** | ||||||
5779371-T-C | 5911330-T-C | *** | ||||||
5903240-G-T | 6035199-G-T | *** | ||||||
6148672-G-A | 6280631-G-A | IR3_Dst | *** | |||||
6172777-C-G | 6304736-C-G | IR3_Dst | *** | |||||
6216346-G-A | 6348305-G-A | IR3_Dst | *** | |||||
6216354-C-A | 6348313-C-A | IR3_Dst | *** | |||||
6216359-G-A | 6348318-G-A | IR3_Dst | *** | |||||
6216363-C-T | 6348322-C-T | IR3_Dst | *** | |||||
6216372-A-G | 6348331-A-G | IR3_Dst | *** | |||||
6216429-T-C | 6348388-T-C | IR3_Dst | *** | |||||
6216447-C-T | 6348406-C-T | IR3_Dst | *** | |||||
6233703-G-A | 6365662-G-A | IR3_Dst | *** | |||||
6233719-A-T | 6365678-A-T | IR3_Dst | *** | |||||
6233731-C-T | 6365690-C-T | IR3_Dst | *** | |||||
6235367-G-A | 6367326-G-A | IR3_Dst | *** | |||||
6235370-T-A | 6367329-T-A | IR3_Dst | *** | |||||
6235384-C-A | 6367343-C-A | IR3_Dst | *** | |||||
6235387-G-A | 6367346-G-A | IR3_Dst | *** | |||||
6235390-C-G | 6367349-C-G | IR3_Dst | *** | |||||
6235405-C-A | 6367364-C-A | IR3_Dst | *** | |||||
6235406-C-A | 6367365-C-A | IR3_Dst | *** | |||||
6262524-G-A | 6394483-G-A | IR3_Dst | *** | |||||
6262528-T-G | 6394487-T-G | IR3_Dst | *** | |||||
6262550-A-T | 6394509-A-T | IR3_Dst | *** | |||||
6262579-A-T | 6394538-A-T | IR3_Dst | *** | |||||
6262580-A-T | 6394539-A-T | IR3_Dst | *** | |||||
6262584-A-C | 6394543-A-C | IR3_Dst | *** | |||||
6262585-A-T | 6394544-A-T | IR3_Dst | *** | |||||
6305947-T-A | 6437906-T-A | IR3_Dst | *** | |||||
6612580-A-T | 6744539-A-T | *** | ||||||
7985410-G-A | 8117369-G-A | *** | ||||||
8004680-G-A | 8136639-G-A | *** | ||||||
8174714-G-T | 8306673-G-T | *** | ||||||
9302436-C-G | 9464827-C-G | *** | ||||||
9354306-T-A | 9516697-T-A | *** | ||||||
9367739-A-G | 9530130-A-G | *** | ||||||
9570652-C-T | 9733043-C-T | IR3_Prx | *** | |||||
9570654-A-T | 9733045-A-T | IR3_Prx | *** | |||||
9570692-A-G | 9733083-A-G | IR3_Prx | *** | |||||
9570696-A-C | 9733087-A-C | IR3_Prx | *** | |||||
9570707-A-G | 9733098-A-G | IR3_Prx | *** | |||||
9570732-T-C | 9733123-T-C | IR3_Prx | *** | |||||
9570738-A-C | 9733129-A-C | IR3_Prx | *** | |||||
9570741-C-A | 9733132-C-A | IR3_Prx | *** | |||||
9570742-A-G | 9733133-A-G | IR3_Prx | *** | |||||
9570753-A-T | 9733144-A-T | IR3_Prx | *** | |||||
9570771-A-C | 9733162-A-C | IR3_Prx | *** | |||||
9570810-C-T | 9733201-C-T | IR3_Prx | *** | |||||
9611104-C-A | 9773495-C-A | IR3_Prx | *** | |||||
9611107-A-G | 9773498-A-G | IR3_Prx | *** | |||||
9611108-T-G | 9773499-T-G | IR3_Prx | *** | |||||
9611113-T-C | 9773504-T-C | IR3_Prx | *** | |||||
9754155-G-T | 9916546-G-T | *** | ||||||
9754164-A-T | 9916555-A-T | *** | ||||||
10006430-A-G | 10168821-A-G | *** | ||||||
10059236-C-T | 10221627-C-T | *** | ||||||
10059250-A-G | 10221641-A-G | *** | ||||||
10073454-A-T | 10235845-A-T | *** | ||||||
13105939-C-T | 10595425-C-T | *** | ||||||
13105944-A-C | 10595430-A-C | *** | ||||||
13105945-G-C | 10595431-G-C | *** | ||||||
13106407-G-A | 10595893-G-A | *** | ||||||
13106417-C-A | 10595903-C-A | *** | ||||||
13106441-A-G | 10595927-A-G | *** | ||||||
13106444-C-G | 10595930-C-G | *** | ||||||
13106451-C-T | 10595937-C-T | *** | ||||||
13110247-T-A | 10599733-T-A | *** | ||||||
13110251-C-T | 10599737-C-T | *** | ||||||
13110259-G-C | 10599745-G-C | *** | ||||||
13110260-A-T | 10599746-A-T | *** | ||||||
13110595-A-G | 10600081-A-G | *** | ||||||
13407276-G-A | 11251600-G-A | *** | ||||||
13465400-G-T | 11309724-G-T | *** | ||||||
13473072-A-G | 11317396-A-G | *** | ||||||
13475654-C-G | 11319978-C-G | *** | ||||||
13475712-T-G | 11320036-T-G | *** | ||||||
13475763-T-A | 11320087-T-A | *** | ||||||
13481814-A-T | 11326138-A-T | *** | ||||||
13483541-A-G | 11327865-A-G | *** | ||||||
13606899-A-G | 11451223-A-G | *** | ||||||
13716365-A-G | 11560689-A-G | *** | ||||||
13716371-A-T | 11560695-A-T | *** | ||||||
13716373-G-A | 11560697-G-A | *** | ||||||
13716375-A-G | 11560699-A-G | *** | ||||||
13734257-G-A | 11578581-G-A | *** | ||||||
13799428-T-A | 11678722-T-A | *** | ||||||
13825422-A-G | 11704716-A-G | *** | ||||||
13862333-G-T | 11741627-G-T | *** | ||||||
14045562-C-T | 11924856-C-T | *** | ||||||
14473323-C-T | 12352592-C-T | *** | ||||||
14556196-C-A | 12444397-C-A | *** | ||||||
15215182-C-A | 13103268-C-A | *** | ||||||
15287376-C-T | 13175475-C-T | *** | ||||||
15293907-T-C | 13182006-T-C | *** | ||||||
15350683-C-T | 13238802-C-T | *** | ||||||
15509380-C-A | 13397500-C-A | *** | ||||||
15636590-G-A | 13524710-G-A | *** | ||||||
15672330-A-G | 13560450-A-G | *** | ||||||
15806439-A-C | 13694559-A-C | *** | ||||||
15806450-C-T | 13694570-C-T | *** | ||||||
16313122-A-G | 14201242-A-G | *** | ||||||
16313125-A-G | 14201245-A-G | *** | ||||||
16313129-A-G | 14201249-A-G | *** | ||||||
16815579-G-A | 14703699-G-A | *** | ||||||
18042518-T-G | 15930638-T-G | *** | ||||||
18530837-C-A | 16418957-C-A | P6_Dst | *** | |||||
18952906-A-G | 16841026-A-G | *** | ||||||
19013061-A-C | 16901181-A-C | *** | ||||||
19319850-A-T | 17207970-A-T | *** | ||||||
19656811-C-A | 17544931-C-A | P5_Prx | *** | |||||
19657044-C-G | 17545164-C-G | P5_Prx | *** | |||||
19657067-T-C | 17545187-T-C | P5_Prx | *** | |||||
19657091-G-C | 17545211-G-C | P5_Prx | *** | |||||
19657106-G-T | 17545226-G-T | P5_Prx | *** | |||||
19657113-G-A | 17545233-G-A | P5_Prx | *** | |||||
19657121-C-T | 17545241-C-T | P5_Prx | *** | |||||
19699515-C-T | 17587635-C-T | P5_Prx | *** | |||||
19699519-T-A | 17587639-T-A | P5_Prx | *** | |||||
19699521-A-C | 17587641-A-C | P5_Prx | *** | |||||
19699526-T-A | 17587646-T-A | P5_Prx | *** | |||||
19699527-T-A | 17587647-T-A | P5_Prx | *** | |||||
19699558-G-T | 17587678-G-T | P5_Prx | *** | |||||
19753115-C-A | 17641235-C-A | P5_Prx | *** | |||||
19753129-T-A | 17641249-T-A | P5_Prx | *** | |||||
19753139-G-T | 17641259-G-T | P5_Prx | *** | |||||
19753149-G-A | 17641269-G-A | P5_Prx | *** | |||||
19827791-C-A | 17715911-C-A | P5_Prx | *** | |||||
19847631-C-T | 17735751-C-T | P5_Prx | *** | |||||
19888003-T-C | 17776123-T-C | P5_Prx | *** | |||||
19888007-A-G | 17776127-A-G | P5_Prx | *** | |||||
20001588-A-T | 17889708-A-T | P5_Prx | *** | |||||
20005608-A-T | 17893728-A-T | P5_Prx | *** | |||||
20005611-A-T | 17893731-A-T | P5_Prx | *** | |||||
20005623-A-T | 17893743-A-T | P5_Prx | *** | |||||
20005634-C-A | 17893754-C-A | P5_Prx | *** | |||||
20005636-C-A | 17893756-C-A | P5_Prx | *** | |||||
20005638-G-T | 17893758-G-T | P5_Prx | *** | |||||
20022617-G-A | 17910737-G-A | P5_Prx | *** | |||||
20022630-C-A | 17910750-C-A | P5_Prx | *** | |||||
20022631-T-A | 17910751-T-A | P5_Prx | *** | |||||
20022633-C-A | 17910753-C-A | P5_Prx | *** | |||||
20062826-A-T | 17950946-A-T | P5_Prx | *** | |||||
20318576-G-A | 18156690-G-A | P5_Dst | *** | |||||
20489344-G-A | 18327458-G-A | P5_Dst | *** | |||||
20500800-G-A | 18338914-G-A | P5_Dst | *** | |||||
20535994-A-G | 18374108-A-G | P5_Dst | *** | |||||
20535997-T-C | 18374111-T-C | P5_Dst | *** | |||||
20540749-C-G | 18378863-C-G | P5_Dst | *** | |||||
20540770-G-A | 18378884-G-A | P5_Dst | *** | |||||
20540992-T-C | 18379106-T-C | P5_Dst | *** | |||||
20541018-C-T | 18379132-C-T | P5_Dst | *** | |||||
20570467-T-A | 18408581-T-A | P5_Dst | *** | |||||
20574443-A-G | 18412557-A-G | P5_Dst | *** | |||||
20655028-G-A | 18493142-G-A | P4_Prx | *** | |||||
21085805-A-C | 18923919-A-C | *** | ||||||
21539469-A-T | 19377583-A-T | *** | ||||||
21840745-T-C | 19678859-T-C | *** | ||||||
21840747-T-G | 19678861-T-G | *** | ||||||
21887940-A-G | 19726054-A-G | *** | ||||||
22232380-A-T | 20070494-A-T | DYZ19 | *** | |||||
22236518-G-T | 20074632-G-T | DYZ19 | *** | |||||
22248371-G-A | 20086485-G-A | DYZ19 | *** | |||||
22252790-T-A | 20090904-T-A | DYZ19 | *** | |||||
22252793-T-A | 20090907-T-A | DYZ19 | *** | |||||
22252802-C-T | 20090916-C-T | DYZ19 | *** | |||||
22252816-T-C | 20090930-T-C | DYZ19 | *** | |||||
22292255-C-T | 20130369-C-T | DYZ19 | *** | |||||
22297502-A-G | 20135616-A-G | DYZ19 | *** | |||||
22337497-G-A | 20175611-G-A | DYZ19 | *** | |||||
22337541-C-A | 20175655-C-A | DYZ19 | *** | |||||
22337551-A-C | 20175665-A-C | DYZ19 | *** | |||||
22337552-G-T | 20175666-G-T | DYZ19 | *** | |||||
22342105-C-T | 20180219-C-T | DYZ19 | *** | |||||
22342113-G-T | 20180227-G-T | DYZ19 | *** | |||||
22344201-A-C | 20182315-A-C | DYZ19 | *** | |||||
22364753-C-A | 20202867-C-A | DYZ19 | *** | |||||
22364754-C-A | 20202868-C-A | DYZ19 | *** | |||||
22364829-A-G | 20202943-A-G | DYZ19 | *** | |||||
22364843-A-T | 20202957-A-T | DYZ19 | *** | |||||
22365995-T-C | 20204109-T-C | DYZ19 | *** | |||||
22366006-G-T | 20204120-G-T | DYZ19 | *** | |||||
22367149-G-C | 20205263-G-C | DYZ19 | *** | |||||
22367151-G-T | 20205265-G-T | DYZ19 | *** | |||||
22421829-G-T | 20259943-G-T | DYZ19 | *** | |||||
22421832-C-T | 20259946-C-T | DYZ19 | *** | |||||
22447734-G-T | 20285848-G-T | BY168963 | DYZ19 | *** | ||||
22490094-G-A | 20328208-G-A | DYZ19 | *** | |||||
22490201-G-T | 20328315-G-T | DYZ19 | *** | |||||
22490983-T-G | 20329097-T-G | DYZ19 | *** | |||||
22490989-A-C | 20329103-A-C | DYZ19 | *** | |||||
22491318-A-T | 20329432-A-T | DYZ19 | *** | |||||
22491326-G-T | 20329440-G-T | DYZ19 | *** | |||||
22504811-A-G | 20342925-A-G | DYZ19 | *** | |||||
22534903-A-T | 20373017-A-T | *** | ||||||
22534917-A-T | 20373031-A-T | *** | ||||||
22534925-C-A | 20373039-C-A | *** | ||||||
22534964-C-A | 20373078-C-A | F14638 | *** | |||||
22534965-G-A | 20373079-G-A | FTB21841 | *** | |||||
22790950-A-T | 20629064-A-T | *** | ||||||
23109823-C-T | 20947937-C-T | *** | ||||||
24013508-G-A | 21867361-G-A | *** | ||||||
24013522-T-A | 21867375-T-A | *** | ||||||
24013526-T-A | 21867379-T-A | *** | ||||||
24052239-A-T | 21906092-A-T | P3_b1 | *** | |||||
24115436-C-T | 21969289-C-T | P3_b1 | *** | |||||
24535759-A-T | 22389612-A-T | P3_t2 | *** | |||||
24535761-A-T | 22389614-A-T | P3_t2 | *** | |||||
24535766-G-C | 22389619-G-C | P3_t2 | *** | |||||
24535839-C-T | 22389692-C-T | P3_t2 | *** | |||||
24535971-A-G | 22389824-A-G | P3_t2 | *** | |||||
24535972-A-T | 22389825-A-T | P3_t2 | *** | |||||
24535982-A-T | 22389835-A-T | P3_t2 | *** | |||||
24535997-G-A | 22389850-G-A | P3_t2 | *** | |||||
24616388-C-A | 22470241-C-A | P3_t2 | *** | |||||
24616390-T-A | 22470243-T-A | P3_t2 | *** | |||||
24892987-A-G | 22746840-A-G | g1 | *** | |||||
26174547-C-A | 24028400-C-A | P1_Y1 | *** | |||||
26174548-T-A | 24028401-T-A | P1_Y1 | *** | |||||
26174568-A-T | 24028421-A-T | P1_Y1 | *** | |||||
26174574-C-G | 24028427-C-G | P1_Y1 | *** | |||||
26248667-T-A | 24102520-T-A | P1_Y1 | *** | |||||
26249289-G-A | 24103142-G-A | P1_Y1 | *** | |||||
26483512-T-G | 24337365-T-G | P1_Y1 | *** | |||||
27270593-T-A | 25124446-T-A | P1_g3 | *** | |||||
27378596-G-T | 25232449-G-T | P1_g3 | *** | |||||
27421360-C-T | 25275213-C-T | P1_g3 | *** | |||||
27421420-A-G | 25275273-A-G | P1_g3 | *** | |||||
27421436-G-A | 25275289-G-A | P1_g3 | *** | |||||
27522875-T-A | 25376728-T-A | P1_Y2 | *** | |||||
27816169-G-A | 25670022-G-A | P1_Y2 | *** | |||||
27816191-T-C | 25670044-T-C | P1_Y2 | *** | |||||
27967192-G-A | 25821045-G-A | P1_Y2 | *** | |||||
27967610-C-A | 25821463-C-A | P1_Y2 | *** | |||||
27967612-T-A | 25821465-T-A | P1_Y2 | *** | |||||
27967617-T-A | 25821470-T-A | P1_Y2 | *** | |||||
27967625-G-A | 25821478-G-A | P1_Y2 | *** | |||||
28000099-C-A | 25853952-C-A | P1_Y2 | *** | |||||
28000110-G-A | 25853963-G-A | P1_Y2 | *** | |||||
28000122-T-A | 25853975-T-A | P1_Y2 | *** | |||||
28000123-G-T | 25853976-G-T | P1_Y2 | *** | |||||
28245727-T-C | 26099580-T-C | P1_b4 | *** | |||||
58828923-C-G | 56761948-G-C | *** | ||||||
58829105-A-T | 56761766-T-A | *** | ||||||
58831512-C-T | 56759359-G-A | *** | ||||||
58831515-T-G | 56759356-A-C | *** | ||||||
58831537-C-A | 56759334-G-T | *** | ||||||
58833577-C-T | 56757294-G-A | *** | ||||||
58836567-G-A | 56754304-C-T | *** | ||||||
58836592-C-A | 56754279-G-T | *** | ||||||
58838423-C-T | 56752448-G-A | *** | ||||||
58838835-G-C | 56752036-C-G | *** | ||||||
58841266-G-C | 56749605-C-G | *** | ||||||
58841329-T-A | 56749542-A-T | *** | ||||||
58842326-T-G | 56748545-A-C | *** | ||||||
58842331-A-T | 56748540-T-A | *** | ||||||
58843674-C-G | 56747197-G-C | *** | ||||||
58843726-A-T | 56747145-T-A | *** | ||||||
58845973-C-A | 56744898-G-T | *** | ||||||
58846254-C-T | 56744617-G-A | *** | ||||||
58847198-T-G | 56743673-A-C | *** | ||||||
58847919-C-T | 56742952-G-A | *** | ||||||
58847925-C-T | 56742946-G-A | *** | ||||||
58848424-C-T | 56742447-G-A | *** | ||||||
58848452-T-A | 56742419-A-T | *** | ||||||
58848551-A-T | 56742320-T-A | *** | ||||||
58856612-C-A | 56734259-G-T | *** | ||||||
58863692-C-A | 56727179-G-T | *** | ||||||
58865660-G-T | 56725211-C-A | *** | ||||||
58865667-A-C | 56725204-T-G | *** | ||||||
58865703-C-T | 56725168-G-A | *** | ||||||
58865704-A-G | 56725167-T-C | *** | ||||||
58865808-A-T | 56725063-T-A | *** | ||||||
58865833-T-A | 56725038-A-T | *** | ||||||
58868219-T-C | 56722652-A-G | *** | ||||||
58868529-T-A | 56722342-A-T | *** | ||||||
58876421-A-T | 56714450-T-A | *** | ||||||
58877093-T-G | 56713778-A-C | *** | ||||||
58880105-A-T | 56710766-T-A | *** | ||||||
58880122-T-C | 56710749-A-G | *** | ||||||
58889942-A-T | 56700929-T-A | *** | ||||||
58890696-G-C | 56700175-C-G | *** | ||||||
58893205-C-A | 56697666-G-T | *** | ||||||
58893209-C-G | 56697662-G-C | *** | ||||||
58893225-C-T | 56697646-G-A | *** | ||||||
58893226-A-C | 56697645-T-G | *** | ||||||
58893230-C-A | 56697641-G-T | *** | ||||||
58893256-C-T | 56697615-G-A | *** | ||||||
58893265-G-C | 56697606-C-G | *** | ||||||
58893267-T-G | 56697604-A-C | *** | ||||||
58893268-T-C | 56697603-A-G | *** | ||||||
58909196-A-C | 56681675-T-G | *** | ||||||
58909205-C-T | 56681666-G-A | *** | ||||||
58909263-G-A | 56681608-C-T | *** | ||||||
58909269-C-T | 56681602-G-A | *** | ||||||
58910388-C-G | 56680483-G-C | *** | ||||||
58913127-C-A | 56677744-G-T | *** | ||||||
58916956-A-C | 56673915-T-G | *** | ||||||
58916957-C-T | 56673914-G-A | *** | ||||||
18872078-CCTTT-C | 16760198-CCTTT-C | *** | ||||||
13467563-CCT-TCC | 11311887-CCT-TCC | *** | ||||||
13477181-AGA-CGG | 11321505-AGA-CGG | *** | ||||||
3374847-C-CAAAAA | 3506806-C-CAAAAA | 23×A | *** | |||||
6495498-GG-CT | 6627457-GG-CT | *** | ||||||
6863818-CTTTTTTTTT-C | 6995777-CTTTTTTTTT-C | 21×T | *** | |||||
7131401-ACCG-CCCC | 7263360-ACCG-CCCC | *** | ||||||
8481414-TATA-T | 8613373-TATA-T | *** | ||||||
10061941-GCAA-ATAG | 10224332-GCAA-ATAG | *** | ||||||
10073440-ATTCA-GCTCT | 10235831-ATTCA-GCTCT | *** | ||||||
13203980-TC-T | 11048304-TC-T | *** | ||||||
13392965-AG-CA | 11237289-AG-CA | *** | ||||||
13459516-GTTCCATTCCATTCCATTCCA-G | 11303840-GTTCCATTCCATTCCATTCCA-G | 11×TTCCA | *** | |||||
13475703-GAGGC-AATAA | 11320027-GAGGC-AATAA | *** | ||||||
13480166-CAGAGTA-TGGAGCC | 11324490-CAGAGTA-TGGAGCC | *** | ||||||
13483555-TTTATATCACA-AATATGCCAC | 11327879-TTTATATCACA-AATATGCCAC | *** | ||||||
13483612-TTCAG-ATCAC | 11327936-TTCAG-ATCAC | *** | ||||||
14613459-C-CTTTTTTTT | 12501657-C-CTTTTTTTT | 26×T | *** | |||||
16996654-CTT-C | 14884774-CTT-C | 15×T | *** | |||||
18565061-C-CAAAAAA | 16453181-C-CAAAAAA | 27×A | *** | |||||
19071237-CA-AG | 16959357-CA-AG | *** | ||||||
19071263-G-GT | 16959383-G-GT | *** | ||||||
19071265-GGAA-G | 16959385-GGAA-G | *** | ||||||
19853737-TGC-AA | 17741857-TGC-AA | P5_Prx | *** | |||||
20569648-G-AAA | 18407762-G-AAA | P5_Dst | *** | |||||
20655024-GTGTG-A | 18493138-GTGTG-A | P4_Prx | *** | |||||
21553429-T-TTTTTTTTTTTTTTTA | 19391543-T-TTTTTTTTTTTTTTTA | *** | ||||||
22232429-TACC-CACA | 20070543-TACC-CACA | DYZ19 | *** | |||||
22421829-GCAC-TCAT | 20259943-GCAC-TCAT | DYZ19 | *** | |||||
22480701-TTG-GTT | 20318815-TTG-GTT | DYZ19 | *** | |||||
22894151-G-GAAAAAAA | 20732265-G-GAAAAAAA | 28×A | *** | |||||
23091485-TGG-T | 20929599-TGG-T | *** | ||||||
24686428-C-CTTTTTT | 22540281-C-CTTTTTT | P3_b2 | 23×T | *** | ||||
27967197-C-CTT | 25821050-C-CTT | P1_Y2 | *** | |||||
28491337-A-ACAACCACCCCC | 26345190-A-ACAACCACCCCC | *** | ||||||
58829127-TC-CG | 56761743-GA-CG | *** | ||||||
58873098-CTCC-GTCA | 56717770-GGAG-TGAC | *** | ||||||
59004520-AAAGG-TTTAT | 56858373-AAAGG-TTTAT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.