Thomas
FTDNA: B29340, BigY2: B29340Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
| Position | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B29340 | BigY2 B29340 |
|---|---|---|---|---|---|---|---|---|
| hg19:Y:6148217-T-C hg38:Y:6280176-T-C | FGC80642 | IR3_Dst | + | |||||
| hg19:Y:14580323-T-C hg38:Y:12468523-T-C | FGC35833 | Y | Y | + | + | |||
| hg19:Y:22183745-C-A hg38:Y:20021859-C-A | FGC35836 | Y | Y | + | + | |||
| hg19:Y:22242832-A-T hg38:Y:20080946-A-T | FGC35837 | DYZ19 | + | |||||
| hg19:Y:22632361-G-T hg38:Y:20470475-G-T | FGC35838 | Y | + | + | ||||
| hg19:Y:23090094-A-G hg38:Y:20928208-A-G | FGC35840 | Y | Y | + | + | |||
| hg19:Y:23586416-A-G hg38:Y:21424530-A-G | FGC35841 | Y | Y | + | + | |||
| hg19:Y:27827693-G-T hg38:Y:25681546-G-T | FGC80643 | P1_Y2 | + | + | ||||
| hg19:Y:22882035-A-T hg38:Y:20720149-A-T | FGC35839 | Y | Y | + | ||||
| hg19:Y:22303613-T-G hg38:Y:20141727-T-G | DYZ19 | ** | ||||||
| hg19:Y:19130738-C-CTTT hg38:Y:17018858-C-CTTT | 33×T | ** | ||||||
| hg19:Y:3279197-A-G hg38:Y:3411156-A-G | ** | |||||||
| hg19:Y:10051555-A-C hg38:Y:10213946-A-C | ** | |||||||
| hg19:Y:18890462-AAC-A hg38:Y:16778582-AAC-A | ** | |||||||
| hg19:Y:6776083-G-A hg38:Y:6908042-G-A | Y806 | ** | ||||||
| hg19:Y:13568618-C-A hg38:Y:11412942-C-A | FGC85 | ** | ||||||
| hg19:Y:16430917-C-A hg38:Y:14319037-C-A | F20678 | ** | ||||||
| hg19:Y:58992585-G-T hg38:Y:56846438-G-T | ** | |||||||
| hg19:Y:19604809-C-A hg38:Y:17492929-C-A | P5_Prx | 19×A | ** | |||||
| hg19:Y:17828086-GT-G hg38:Y:15716206-GT-G | 12×T | ** | ||||||
| hg19:Y:17126323-G-C hg38:Y:15014443-G-C | FGC35834 | ** | ** | |||||
| hg19:Y:8983328-G-T hg38:Y:9145719-G-T | ** | |||||||
| hg19:Y:16931576-G-T hg38:Y:14819696-G-T | ** | |||||||
| hg19:Y:7621759-C-A hg38:Y:7753718-C-A | ** | |||||||
| hg38:Y:10943393-C-T | ** | |||||||
| hg19:Y:4416891-G-T hg38:Y:4548850-G-T | ** | |||||||
| hg19:Y:8807580-G-T hg38:Y:8939539-G-T | ** | |||||||
| hg19:Y:21880928-C-T hg38:Y:19719042-C-T | ** | |||||||
| hg19:Y:14350117-C-A hg38:Y:12229412-C-A | ** | |||||||
| hg38:Y:10799168-C-A | ** | |||||||
| hg19:Y:14146725-C-A hg38:Y:12026019-C-A | ** | |||||||
| hg38:Y:10691005-G-T | ** | |||||||
| hg19:Y:19040765-C-A hg38:Y:16928885-C-A | ** | |||||||
| hg19:Y:13946832-C-A hg38:Y:11826126-C-A | ** | |||||||
| hg38:Y:10887966-C-A | ** | |||||||
| hg38:Y:10657140-C-A | ** | |||||||
| hg19:Y:21391650-C-CTT hg38:Y:19229764-C-CTT | 14×T | ** | ||||||
| hg38:Y:10756945-C-A | ** | |||||||
| hg19:Y:24458679-G-T hg38:Y:22312532-G-T | ** | |||||||
| hg19:Y:17006315-C-A hg38:Y:14894435-C-A | ** | |||||||
| hg19:Y:14698390-C-A hg38:Y:12586456-C-A | ** | |||||||
| hg19:Y:4586020-C-A hg38:Y:4717979-C-A | ** | |||||||
| hg38:Y:10691082-G-T | ** | |||||||
| hg19:Y:13895272-C-A hg38:Y:11774566-C-A | ** | |||||||
| hg19:Y:15186612-G-A hg38:Y:13074698-G-A | ** | |||||||
| hg19:Y:16421985-C-A hg38:Y:14310105-C-A | ** | |||||||
| hg19:Y:23983321-G-T hg38:Y:21837174-G-T | ** | |||||||
| hg19:Y:4094849-A-ATG hg38:Y:4226808-A-ATG | ** | |||||||
| hg38:Y:10814507-C-T | ** | |||||||
| hg19:Y:20809863-C-A hg38:Y:18647977-C-A | P4_Gap | ** | ||||||
| hg19:Y:13553398-C-A hg38:Y:11397722-C-A | ** | |||||||
| hg19:Y:21334685-C-A hg38:Y:19172799-C-A | ** | |||||||
| hg38:Y:10969562-G-T | ** | |||||||
| hg19:Y:15648666-C-A hg38:Y:13536786-C-A | ** | |||||||
| hg19:Y:16033534-C-A hg38:Y:13921654-C-A | ** | |||||||
| hg19:Y:14195800-C-A hg38:Y:12075094-C-A | ** | |||||||
| hg38:Y:11009320-C-A | ** | |||||||
| hg19:Y:18758945-C-A hg38:Y:16647065-C-A | ** | |||||||
| hg19:Y:4568433-G-T hg38:Y:4700392-G-T | ** | |||||||
| hg19:Y:23442660-C-A hg38:Y:21280774-C-A | ** | |||||||
| hg38:Y:10689170-T-G | ** | |||||||
| hg19:Y:21880924-C-T hg38:Y:19719038-C-T | ** | |||||||
| hg19:Y:5061090-G-T hg38:Y:5193049-G-T | BY58527 | ** | ||||||
| hg38:Y:10894501-C-A | ** | |||||||
| hg19:Y:28633746-C-A hg38:Y:26487599-C-A | ** | |||||||
| hg38:Y:10908066-C-A | ** | |||||||
| hg38:Y:11007435-C-A | ** | |||||||
| hg38:Y:10925489-C-T | ** | |||||||
| hg38:Y:10925530-A-G | ** | |||||||
| hg38:Y:10954330-C-CCACCCTTCTA | ** | |||||||
| hg19:Y:27616397-G-T hg38:Y:25470250-G-T | P1_Y2 | ** | ||||||
| hg19:Y:2909251-G-GA hg38:Y:3041210-G-GA | ** | |||||||
| hg19:Y:20330562-C-T hg38:Y:18168676-C-T | P5_Dst | ** | ||||||
| hg19:Y:9374710-C-A hg38:Y:9537101-C-A | ** | |||||||
| hg19:Y:22798083-G-T hg38:Y:20636197-G-T | ** | |||||||
| hg19:Y:17065947-G-T hg38:Y:14954067-G-T | ** | |||||||
| hg19:Y:4665921-C-A hg38:Y:4797880-C-A | ** | |||||||
| hg19:Y:2759675-C-A hg38:Y:2891634-C-A | ** | |||||||
| hg19:Y:14080100-G-T hg38:Y:11959394-G-T | ** | |||||||
| hg19:Y:6954916-C-A hg38:Y:7086875-C-A | ** | |||||||
| hg19:Y:3267327-C-A hg38:Y:3399286-C-A | ** | |||||||
| hg38:Y:10932740-C-A | ** | |||||||
| hg19:Y:13603120-AT-A hg38:Y:11447444-AT-A | 9×T | ** | ||||||
| hg38:Y:11001493-TC-T | ** | |||||||
| hg38:Y:11018145-C-A | ** | |||||||
| hg19:Y:9926630-C-A hg38:Y:10089021-C-A | ** | |||||||
| hg19:Y:28812337-A-G hg38:Y:26666190-A-G | ** | |||||||
| hg19:Y:28583120-C-A hg38:Y:26436973-C-A | ** | |||||||
| hg38:Y:10877795-C-A | ** | |||||||
| hg19:Y:7861723-C-A hg38:Y:7993682-C-A | ** | |||||||
| hg19:Y:28484747-C-A hg38:Y:26338600-C-A | ** | |||||||
| hg19:Y:17569226-GAAAAAA-G hg38:Y:15457346-GAAAAAA-G | 25×A | ** | ||||||
| hg19:Y:20332156-C-A hg38:Y:18170270-C-A | P5_Dst | ** | ||||||
| hg19:Y:5246642-C-A hg38:Y:5378601-C-A | ** | |||||||
| hg19:Y:13937949-CT-C hg38:Y:11817243-CT-C | ** | |||||||
| hg19:Y:14425051-C-A hg38:Y:12304326-C-A | ** | |||||||
| hg19:Y:7704864-C-A hg38:Y:7836823-C-A | ** | |||||||
| hg19:Y:3272912-C-A hg38:Y:3404871-C-A | ** | |||||||
| hg19:Y:28667994-C-A hg38:Y:26521847-C-A | ** | |||||||
| hg19:Y:3829315-C-A hg38:Y:3961274-C-A | ** | |||||||
| hg19:Y:9964404-C-A hg38:Y:10126795-C-A | ** | |||||||
| hg19:Y:2685623-C-A hg38:Y:2817582-C-A | ** | |||||||
| hg19:Y:15127809-C-A hg38:Y:13015896-C-A | ** | |||||||
| hg19:Y:15400418-C-A hg38:Y:13288538-C-A | ** | |||||||
| hg19:Y:14356405-C-A hg38:Y:12235700-C-A | ** | |||||||
| hg19:Y:28784604-C-A hg38:Y:26638457-C-A | ** | |||||||
| hg19:Y:13462299-C-G hg38:Y:11306623-C-G | ** | |||||||
| hg38:Y:10954291-C-A | ** | |||||||
| hg38:Y:10954307-A-G | ** | |||||||
| hg19:Y:21846526-C-A hg38:Y:19684640-C-A | ** | |||||||
| hg19:Y:13896821-C-A hg38:Y:11776115-C-A | ** | |||||||
| hg19:Y:6830544-C-A hg38:Y:6962503-C-A | ** | |||||||
| hg38:Y:21780484-C-A | ** | |||||||
| hg38:Y:10753995-C-T | ** | |||||||
| hg19:Y:10051629-A-G hg38:Y:10214020-A-G | ** | |||||||
| hg19:Y:17913028-C-A hg38:Y:15801148-C-A | ** | |||||||
| hg19:Y:19246745-C-A hg38:Y:17134865-C-A | ** | |||||||
| hg19:Y:6948367-C-A hg38:Y:7080326-C-A | ** | |||||||
| hg19:Y:6231129-C-A hg38:Y:6363088-C-A | IR3_Dst | ** | ||||||
| hg38:Y:10861290-C-A | ** | |||||||
| hg19:Y:6492076-C-A hg38:Y:6624035-C-A | ** | |||||||
| hg19:Y:27423514-GGTAT-G hg38:Y:25277367-GGTAT-G | P1_g3 | ** | ||||||
| hg19:Y:4919387-G-T hg38:Y:5051346-G-T | ** | |||||||
| hg19:Y:3275746-C-A hg38:Y:3407705-C-A | ** | |||||||
| hg19:Y:28469330-C-A hg38:Y:26323183-C-A | ** | |||||||
| hg38:Y:11013058-C-A | ** | |||||||
| hg19:Y:16146483-GA-G hg38:Y:14034603-GA-G | P8_Dst | ** | ||||||
| hg19:Y:3346952-C-A hg38:Y:3478911-C-A | ** | |||||||
| hg19:Y:15168993-C-A hg38:Y:13057079-C-A | ** | |||||||
| hg19:Y:13487737-C-CGT hg38:Y:11332061-C-CGT | ** | |||||||
| hg19:Y:13487742-C-CCCT hg38:Y:11332066-C-CCCT | ** | |||||||
| hg19:Y:3804332-C-A hg38:Y:3936291-C-A | ** | |||||||
| hg19:Y:13859794-C-A hg38:Y:11739088-C-A | DYZ17 | ** | ||||||
| hg19:Y:13466012-C-T hg38:Y:11310336-C-T | ** | |||||||
| hg19:Y:2977994-G-T hg38:Y:3109953-G-T | ** | |||||||
| hg19:Y:3027029-G-T hg38:Y:3158988-G-T | ** | |||||||
| hg19:Y:3027270-G-T hg38:Y:3159229-G-T | ** | |||||||
| hg19:Y:3073718-C-A hg38:Y:3205677-C-A | ** | |||||||
| hg19:Y:3094099-C-A hg38:Y:3226058-C-A | ** | |||||||
| hg19:Y:3232863-T-G hg38:Y:3364822-T-G | ** | |||||||
| hg19:Y:3279208-C-T hg38:Y:3411167-C-T | ** | |||||||
| hg19:Y:3331905-C-A hg38:Y:3463864-C-A | ** | |||||||
| hg19:Y:3341080-C-A hg38:Y:3473039-C-A | BY57571 | ** | ||||||
| hg19:Y:3341528-G-T hg38:Y:3473487-G-T | ** | |||||||
| hg19:Y:3366391-T-C hg38:Y:3498350-T-C | ** | |||||||
| hg19:Y:3384895-T-C hg38:Y:3516854-T-C | ** | |||||||
| hg19:Y:3452151-G-A hg38:Y:3584110-G-A | ** | |||||||
| hg19:Y:3493101-AT-A hg38:Y:3625060-AT-A | 8×T | ** | ||||||
| hg19:Y:3500308-A-G hg38:Y:3632267-A-G | ** | |||||||
| hg19:Y:3545894-G-A hg38:Y:3677853-G-A | ** | |||||||
| hg19:Y:3560305-A-T hg38:Y:3692264-A-T | ** | |||||||
| hg19:Y:3649302-C-A hg38:Y:3781261-C-A | ** | |||||||
| hg19:Y:3751304-A-C hg38:Y:3883263-A-C | ** | |||||||
| hg19:Y:3786445-G-T hg38:Y:3918404-G-T | ** | |||||||
| hg19:Y:3804383-C-A hg38:Y:3936342-C-A | ** | |||||||
| hg19:Y:3835782-T-C hg38:Y:3967741-T-C | ** | |||||||
| hg19:Y:3900539-C-A hg38:Y:4032498-C-A | ** | |||||||
| hg19:Y:3922664-C-A hg38:Y:4054623-C-A | ** | |||||||
| hg19:Y:3929555-C-A hg38:Y:4061514-C-A | ** | |||||||
| hg19:Y:3961623-C-A hg38:Y:4093582-C-A | ** | |||||||
| hg19:Y:3965841-A-C hg38:Y:4097800-A-C | ** | |||||||
| hg19:Y:4017133-G-A hg38:Y:4149092-G-A | ** | |||||||
| hg19:Y:4066269-C-A hg38:Y:4198228-C-A | ** | |||||||
| hg19:Y:4084268-GAA-G hg38:Y:4216227-GAA-G | 11×A | ** | ||||||
| hg19:Y:4121590-G-T hg38:Y:4253549-G-T | FTB42815 | ** | ||||||
| hg19:Y:4140792-A-T hg38:Y:4272751-A-T | ** | |||||||
| hg19:Y:4151252-C-A hg38:Y:4283211-C-A | 8×A | ** | ||||||
| hg19:Y:4207867-G-T hg38:Y:4339826-G-T | ** | |||||||
| hg19:Y:4241794-C-A hg38:Y:4373753-C-A | ** | |||||||
| hg19:Y:4247788-T-A hg38:Y:4379747-T-A | ** | |||||||
| hg19:Y:4282599-A-G hg38:Y:4414558-A-G | ** | |||||||
| hg19:Y:4557927-G-A hg38:Y:4689886-G-A | ** | |||||||
| hg19:Y:4580261-T-G hg38:Y:4712220-T-G | ** | |||||||
| hg19:Y:4661331-G-T hg38:Y:4793290-G-T | ** | |||||||
| hg19:Y:4665993-T-A hg38:Y:4797952-T-A | ** | |||||||
| hg19:Y:4765291-C-A hg38:Y:4897250-C-A | ** | |||||||
| hg19:Y:4804340-C-A hg38:Y:4936299-C-A | ** | |||||||
| hg19:Y:4893054-T-C hg38:Y:5025013-T-C | ** | |||||||
| hg19:Y:4921523-G-T hg38:Y:5053482-G-T | ** | |||||||
| hg19:Y:4959393-G-A hg38:Y:5091352-G-A | ** | |||||||
| hg19:Y:4964633-C-A hg38:Y:5096592-C-A | ** | |||||||
| hg19:Y:4979811-T-G hg38:Y:5111770-T-G | ** | |||||||
| hg19:Y:5000642-C-A hg38:Y:5132601-C-A | ** | |||||||
| hg19:Y:5084091-A-G hg38:Y:5216050-A-G | ** | |||||||
| hg19:Y:5107972-C-A hg38:Y:5239931-C-A | ** | |||||||
| hg19:Y:5108037-C-A hg38:Y:5239996-C-A | ** | |||||||
| hg19:Y:5127954-G-A hg38:Y:5259913-G-A | ** | |||||||
| hg19:Y:5213989-C-A hg38:Y:5345948-C-A | ** | |||||||
| hg19:Y:5214019-A-T hg38:Y:5345978-A-T | ** | |||||||
| hg19:Y:5243880-T-C hg38:Y:5375839-T-C | FT17337 | ** | ||||||
| hg19:Y:5253993-TA-T hg38:Y:5385952-TA-T | ** | |||||||
| hg19:Y:5412688-C-A hg38:Y:5544647-C-A | ** | |||||||
| hg19:Y:5457828-G-T hg38:Y:5589787-G-T | ** | |||||||
| hg19:Y:5550872-G-C hg38:Y:5682831-G-C | ** | |||||||
| hg19:Y:5551859-T-G hg38:Y:5683818-T-G | ** | |||||||
| hg19:Y:5653389-C-A hg38:Y:5785348-C-A | ** | |||||||
| hg19:Y:5666851-G-T hg38:Y:5798810-G-T | ** | |||||||
| hg19:Y:5675615-C-A hg38:Y:5807574-C-A | ** | |||||||
| hg19:Y:5680532-T-A hg38:Y:5812491-T-A | ** | |||||||
| hg19:Y:5739427-C-A hg38:Y:5871386-C-A | ** | |||||||
| hg19:Y:5743466-C-A hg38:Y:5875425-C-A | ** | |||||||
| hg19:Y:5846823-C-A hg38:Y:5978782-C-A | ** | |||||||
| hg19:Y:5912038-A-T hg38:Y:6043997-A-T | ** | |||||||
| hg19:Y:5980285-G-T hg38:Y:6112244-G-T | ** | |||||||
| hg19:Y:6336643-G-C hg38:Y:6468602-G-C | BY59641 | IR3_Dst | ** | |||||
| hg19:Y:6430168-T-A hg38:Y:6562127-T-A | ** | |||||||
| hg19:Y:6474818-C-A hg38:Y:6606777-C-A | BY60258 | ** | ||||||
| hg19:Y:6490618-C-G hg38:Y:6622577-C-G | ** | |||||||
| hg19:Y:6505714-C-A hg38:Y:6637673-C-A | ** | |||||||
| hg19:Y:6580723-A-C hg38:Y:6712682-A-C | ** | |||||||
| hg19:Y:6648523-C-A hg38:Y:6780482-C-A | ** | |||||||
| hg19:Y:6713239-C-A hg38:Y:6845198-C-A | ** | |||||||
| hg19:Y:6714057-G-T hg38:Y:6846016-G-T | ** | |||||||
| hg19:Y:6769919-T-C hg38:Y:6901878-T-C | ** | |||||||
| hg19:Y:6971816-G-A hg38:Y:7103775-G-A | ** | |||||||
| hg19:Y:7021285-A-T hg38:Y:7153244-A-T | ** | |||||||
| hg19:Y:7140979-C-A hg38:Y:7272938-C-A | ** | |||||||
| hg19:Y:7164323-C-A hg38:Y:7296282-C-A | ** | |||||||
| hg19:Y:7175915-TATCCAA-T hg38:Y:7307874-TATCCAA-T | ** | |||||||
| hg19:Y:7175954-A-T hg38:Y:7307913-A-T | ** | |||||||
| hg19:Y:7221391-C-A hg38:Y:7353350-C-A | ** | |||||||
| hg19:Y:7243793-C-A hg38:Y:7375752-C-A | ** | |||||||
| hg19:Y:7258755-CAAAAAA-C hg38:Y:7390714-CAAAAAA-C | 25×A | ** | ||||||
| hg19:Y:7309798-G-A hg38:Y:7441757-G-A | ** | |||||||
| hg19:Y:7332857-C-A hg38:Y:7464816-C-A | ** | |||||||
| hg19:Y:7348868-C-A hg38:Y:7480827-C-A | ** | |||||||
| hg19:Y:7360753-C-A hg38:Y:7492712-C-A | ** | |||||||
| hg19:Y:7418549-T-G hg38:Y:7550508-T-G | ** | |||||||
| hg19:Y:7984584-C-A hg38:Y:8116543-C-A | ** | |||||||
| hg19:Y:7990751-G-A hg38:Y:8122710-G-A | ** | |||||||
| hg19:Y:7996903-G-A hg38:Y:8128862-G-A | ** | |||||||
| hg19:Y:8044625-G-A hg38:Y:8176584-G-A | ** | |||||||
| hg19:Y:8062934-G-T hg38:Y:8194893-G-T | ** | |||||||
| hg19:Y:8091138-C-A hg38:Y:8223097-C-A | ** | |||||||
| hg19:Y:8110895-G-A hg38:Y:8242854-G-A | ** | |||||||
| hg19:Y:8112488-C-A hg38:Y:8244447-C-A | ** | |||||||
| hg19:Y:8288619-C-A hg38:Y:8420578-C-A | ** | |||||||
| hg19:Y:8786811-G-T hg38:Y:8918770-G-T | ** | |||||||
| hg19:Y:8807581-A-G hg38:Y:8939540-A-G | ** | |||||||
| hg19:Y:8807582-T-C hg38:Y:8939541-T-C | ** | |||||||
| hg19:Y:8827193-G-A hg38:Y:8959152-G-A | ** | |||||||
| hg19:Y:9140128-C-A hg38:Y:9302519-C-A | ** | |||||||
| hg19:Y:9171255-C-A hg38:Y:9333646-C-A | ** | |||||||
| hg19:Y:9240820-C-A hg38:Y:9403211-C-A | ** | |||||||
| hg19:Y:9427554-T-C hg38:Y:9589945-T-C | ** | |||||||
| hg19:Y:9440443-C-A hg38:Y:9602834-C-A | ** | |||||||
| hg19:Y:9639078-G-T hg38:Y:9801469-G-T | IR3_Prx | ** | ||||||
| hg19:Y:9990053-C-A hg38:Y:10152444-C-A | ** | |||||||
| hg19:Y:10051625-A-G hg38:Y:10214016-A-G | ** | |||||||
| hg38:Y:10624371-C-A | ** | |||||||
| hg38:Y:10662936-A-T | ** | |||||||
| hg38:Y:10663535-G-T | ** | |||||||
| hg38:Y:10673100-T-G | ** | |||||||
| hg38:Y:10677902-C-A | ** | |||||||
| hg38:Y:10685107-C-A | ** | |||||||
| hg38:Y:10689090-T-G | ** | |||||||
| hg38:Y:10690680-C-A | ** | |||||||
| hg38:Y:10747025-T-TTAATC | ** | |||||||
| hg38:Y:10758094-C-A | ** | |||||||
| hg38:Y:10781641-C-A | ** | |||||||
| hg38:Y:10788521-C-A | ** | |||||||
| hg38:Y:10792920-T-C | FT351514 | ** | ||||||
| hg38:Y:10802246-C-A | ** | |||||||
| hg38:Y:10814500-T-G | ** | |||||||
| hg38:Y:10827352-G-T | ** | |||||||
| hg38:Y:10836589-C-A | ** | |||||||
| hg38:Y:10864694-C-T | ** | |||||||
| hg38:Y:10877770-C-A | ** | |||||||
| hg38:Y:10877794-A-T | ** | |||||||
| hg38:Y:10877831-T-C | ** | |||||||
| hg38:Y:10899706-C-G | ** | |||||||
| hg38:Y:10913763-G-C | ** | |||||||
| hg38:Y:10926950-C-A | ** | |||||||
| hg38:Y:10933470-C-A | ** | |||||||
| hg38:Y:10954358-G-GTGTAT | ** | |||||||
| hg38:Y:10954361-C-A | ** | |||||||
| hg38:Y:10984497-A-T | ** | |||||||
| hg38:Y:11007312-C-A | ** | |||||||
| hg38:Y:11015953-C-A | ** | |||||||
| hg38:Y:11022465-G-A | ** | |||||||
| hg38:Y:11025804-G-T | ** | |||||||
| hg38:Y:11038175-C-G | ** | |||||||
| hg19:Y:13215376-T-C hg38:Y:11059700-T-C | ** | |||||||
| hg19:Y:13411872-T-G hg38:Y:11256196-T-G | ** | |||||||
| hg19:Y:13512213-C-A hg38:Y:11356537-C-A | FT73629 | ** | ||||||
| hg19:Y:13576245-C-A hg38:Y:11420569-C-A | ** | |||||||
| hg19:Y:13576900-G-A hg38:Y:11421224-G-A | ** | |||||||
| hg19:Y:13576912-T-G hg38:Y:11421236-T-G | ** | |||||||
| hg19:Y:13576913-G-A hg38:Y:11421237-G-A | ** | |||||||
| hg19:Y:13611988-GTTTT-G hg38:Y:11456312-GTTTT-G | 19×T | ** | ||||||
| hg38:Y:11650592-G-T | DYZ17 | ** | ||||||
| hg19:Y:13873895-G-A hg38:Y:11753189-G-A | ** | |||||||
| hg19:Y:13926126-A-C hg38:Y:11805420-A-C | ** | |||||||
| hg19:Y:13928216-G-A hg38:Y:11807510-G-A | ** | |||||||
| hg19:Y:13960602-T-G hg38:Y:11839896-T-G | ** | |||||||
| hg19:Y:14159642-G-T hg38:Y:12038936-G-T | ** | |||||||
| hg19:Y:14187228-C-A hg38:Y:12066522-C-A | ** | |||||||
| hg19:Y:14191653-C-A hg38:Y:12070947-C-A | ** | |||||||
| hg19:Y:14225548-C-A hg38:Y:12104842-C-A | ** | |||||||
| hg19:Y:14270734-G-T hg38:Y:12150028-G-T | ** | |||||||
| hg19:Y:14297942-C-A hg38:Y:12177236-C-A | ** | |||||||
| hg19:Y:14356264-A-T hg38:Y:12235559-A-T | ** | |||||||
| hg19:Y:14385467-A-T hg38:Y:12264763-A-T | ** | |||||||
| hg19:Y:14445321-T-C hg38:Y:12324594-T-C | ** | |||||||
| hg19:Y:14485391-T-C hg38:Y:12364660-T-C | ** | |||||||
| hg19:Y:14495600-G-T hg38:Y:12383797-G-T | ** | |||||||
| hg19:Y:14501370-G-T hg38:Y:12389575-G-T | ** | |||||||
| hg19:Y:14513166-C-T hg38:Y:12401371-C-T | ** | |||||||
| hg19:Y:14517074-C-A hg38:Y:12405275-C-A | ** | |||||||
| hg19:Y:14531341-C-A hg38:Y:12419542-C-A | ** | |||||||
| hg19:Y:14589861-G-T hg38:Y:12478061-G-T | ** | |||||||
| hg19:Y:14635136-G-T hg38:Y:12523205-G-T | ** | |||||||
| hg19:Y:14700685-C-A hg38:Y:12588751-C-A | ** | |||||||
| hg19:Y:14718362-T-C hg38:Y:12606430-T-C | ** | |||||||
| hg19:Y:14718799-C-A hg38:Y:12606867-C-A | ** | |||||||
| hg19:Y:14740766-C-A hg38:Y:12628834-C-A | ** | |||||||
| hg19:Y:14792820-C-A hg38:Y:12680891-C-A | ** | |||||||
| hg19:Y:14796240-G-A hg38:Y:12684311-G-A | ** | |||||||
| hg19:Y:15044476-C-A hg38:Y:12932566-C-A | ** | |||||||
| hg19:Y:15092474-C-A hg38:Y:12980563-C-A | ** | |||||||
| hg19:Y:15171435-C-A hg38:Y:13059521-C-A | ** | |||||||
| hg19:Y:15173508-G-A hg38:Y:13061594-G-A | ** | |||||||
| hg19:Y:15173508-G-GA hg38:Y:13061594-G-GA | ** | |||||||
| hg19:Y:15302396-C-A hg38:Y:13190495-C-A | ** | |||||||
| hg19:Y:15394447-C-T hg38:Y:13282567-C-T | ** | |||||||
| hg19:Y:15397041-T-C hg38:Y:13285161-T-C | ** | |||||||
| hg19:Y:15424376-G-A hg38:Y:13312496-G-A | ** | |||||||
| hg19:Y:15429505-TAATTACAGTTG-T hg38:Y:13317625-TAATTACAGTTG-T | ** | |||||||
| hg19:Y:16013108-G-T hg38:Y:13901228-G-T | ** | |||||||
| hg19:Y:16024169-A-G hg38:Y:13912289-A-G | Z31966 | ** | ||||||
| hg19:Y:16029386-C-A hg38:Y:13917506-C-A | ** | |||||||
| hg19:Y:16146459-C-G hg38:Y:14034579-C-G | P8_Dst | ** | ||||||
| hg19:Y:16394310-G-A hg38:Y:14282430-G-A | ** | |||||||
| hg19:Y:16481029-C-A hg38:Y:14369149-C-A | ** | |||||||
| hg19:Y:16540987-T-A hg38:Y:14429107-T-A | ** | |||||||
| hg19:Y:16623275-A-G hg38:Y:14511395-A-G | ** | |||||||
| hg19:Y:16721569-C-A hg38:Y:14609689-C-A | ** | |||||||
| hg19:Y:17023437-C-A hg38:Y:14911557-C-A | ** | |||||||
| hg19:Y:17039099-A-G hg38:Y:14927219-A-G | ** | |||||||
| hg19:Y:17103677-G-T hg38:Y:14991797-G-T | ** | |||||||
| hg19:Y:17135907-G-A hg38:Y:15024027-G-A | ** | |||||||
| hg19:Y:17221370-CT-C hg38:Y:15109490-CT-C | ** | |||||||
| hg19:Y:17259089-A-G hg38:Y:15147209-A-G | ** | |||||||
| hg19:Y:17362759-C-A hg38:Y:15250879-C-A | ** | |||||||
| hg19:Y:17366873-A-C hg38:Y:15254993-A-C | ** | |||||||
| hg19:Y:17499030-C-G hg38:Y:15387150-C-G | ** | |||||||
| hg19:Y:17547877-G-A hg38:Y:15435997-G-A | ** | |||||||
| hg19:Y:17697047-C-T hg38:Y:15585167-C-T | ** | |||||||
| hg19:Y:17697051-C-T hg38:Y:15585171-C-T | ** | |||||||
| hg19:Y:17697052-A-G hg38:Y:15585172-A-G | ** | |||||||
| hg19:Y:17697057-T-G hg38:Y:15585177-T-G | ** | |||||||
| hg19:Y:17697061-C-T hg38:Y:15585181-C-T | ** | |||||||
| hg19:Y:17697062-A-G hg38:Y:15585182-A-G | ** | |||||||
| hg19:Y:17697064-A-T hg38:Y:15585184-A-T | ** | |||||||
| hg19:Y:17697078-C-T hg38:Y:15585198-C-T | ** | |||||||
| hg19:Y:17697091-C-A hg38:Y:15585211-C-A | ** | |||||||
| hg19:Y:17697106-A-C hg38:Y:15585226-A-C | ** | |||||||
| hg19:Y:17716890-C-A hg38:Y:15605010-C-A | ** | |||||||
| hg19:Y:17718454-T-G hg38:Y:15606574-T-G | ** | |||||||
| hg19:Y:17850124-C-A hg38:Y:15738244-C-A | ** | |||||||
| hg19:Y:18101519-G-T hg38:Y:15989639-G-T | ** | |||||||
| hg19:Y:18185612-G-T hg38:Y:16073732-G-T | ** | |||||||
| hg19:Y:18211264-G-T hg38:Y:16099384-G-T | ** | |||||||
| hg19:Y:18288538-C-A hg38:Y:16176658-C-A | BY121400 | P6_Prx | ** | |||||
| hg19:Y:18353482-A-AT hg38:Y:16241602-A-AT | P6_Prx | ** | ||||||
| hg19:Y:18401186-T-G hg38:Y:16289306-T-G | P6_Gap | ** | ||||||
| hg19:Y:18577803-C-A hg38:Y:16465923-C-A | ** | |||||||
| hg19:Y:18791228-TA-T hg38:Y:16679348-TA-T | ** | |||||||
| hg19:Y:18879940-C-A hg38:Y:16768060-C-A | ** | |||||||
| hg19:Y:18931888-G-C hg38:Y:16820008-G-C | ** | |||||||
| hg19:Y:19088165-C-A hg38:Y:16976285-C-A | ** | |||||||
| hg19:Y:19155141-C-T hg38:Y:17043261-C-T | ** | |||||||
| hg19:Y:19356173-C-A hg38:Y:17244293-C-A | ** | |||||||
| hg19:Y:19393085-C-A hg38:Y:17281205-C-A | ** | |||||||
| hg19:Y:19459236-C-T hg38:Y:17347356-C-T | ** | |||||||
| hg19:Y:19532823-G-A hg38:Y:17420943-G-A | Y16417 | ** | ||||||
| hg19:Y:19597210-T-TATC hg38:Y:17485330-T-TATC | P5_Prx | ** | ||||||
| hg19:Y:20347332-T-TA hg38:Y:18185446-T-TA | P5_Dst | ** | ||||||
| hg19:Y:21127489-T-C hg38:Y:18965603-T-C | ** | |||||||
| hg19:Y:21176981-T-C hg38:Y:19015095-T-C | ** | |||||||
| hg19:Y:21206927-C-A hg38:Y:19045041-C-A | ** | |||||||
| hg19:Y:21240588-G-A hg38:Y:19078702-G-A | ** | |||||||
| hg19:Y:21346536-C-A hg38:Y:19184650-C-A | ** | |||||||
| hg19:Y:21380683-G-T hg38:Y:19218797-G-T | ** | |||||||
| hg19:Y:21419291-G-C hg38:Y:19257405-G-C | ** | |||||||
| hg19:Y:21543231-C-A hg38:Y:19381345-C-A | ** | |||||||
| hg19:Y:21807107-C-A hg38:Y:19645221-C-A | ** | |||||||
| hg19:Y:21880913-G-T hg38:Y:19719027-G-T | ** | |||||||
| hg19:Y:21955733-G-T hg38:Y:19793847-G-T | ** | |||||||
| hg19:Y:21969230-C-A hg38:Y:19807344-C-A | ** | |||||||
| hg19:Y:22076990-T-C hg38:Y:19915104-T-C | BZ575 | ** | ||||||
| hg19:Y:22169037-A-G hg38:Y:20007151-A-G | ** | |||||||
| hg19:Y:22199316-CA-C hg38:Y:20037430-CA-C | ** | |||||||
| hg19:Y:22205374-A-G hg38:Y:20043488-A-G | ** | |||||||
| hg19:Y:22221887-T-C hg38:Y:20060001-T-C | DYZ19 | ** | ||||||
| hg19:Y:22694863-A-G hg38:Y:20532977-A-G | ** | |||||||
| hg19:Y:22780686-A-G hg38:Y:20618800-A-G | ** | |||||||
| hg19:Y:23065734-C-A hg38:Y:20903848-C-A | ** | |||||||
| hg19:Y:23184953-T-C hg38:Y:21023067-T-C | ** | |||||||
| hg19:Y:23261362-A-G hg38:Y:21099476-A-G | ** | |||||||
| hg19:Y:23277274-T-C hg38:Y:21115388-T-C | ** | |||||||
| hg19:Y:23332200-C-T hg38:Y:21170314-C-T | ** | |||||||
| hg19:Y:23361642-T-A hg38:Y:21199756-T-A | ** | |||||||
| hg19:Y:23459690-A-G hg38:Y:21297804-A-G | ** | |||||||
| hg19:Y:23475505-G-T hg38:Y:21313619-G-T | ** | |||||||
| hg19:Y:23884436-A-AT hg38:Y:21722550-A-AT | ** | |||||||
| hg19:Y:24265854-A-G hg38:Y:22119707-A-G | P3_b1 | ** | ||||||
| hg19:Y:24404253-G-T hg38:Y:22258106-G-T | ** | |||||||
| hg19:Y:25850847-A-G hg38:Y:23704700-A-G | P1_Y1 | ** | ||||||
| hg19:Y:26344195-G-A hg38:Y:24198048-G-A | P1_Y1 | ** | ||||||
| hg19:Y:26422544-G-T hg38:Y:24276397-G-T | P1_Y1 | ** | ||||||
| hg19:Y:27791974-T-G hg38:Y:25645827-T-G | BY226899 | P1_Y2 | ** | |||||
| hg19:Y:28120598-T-G hg38:Y:25974451-T-G | P1_b4 | ** | ||||||
| hg19:Y:28465921-C-A hg38:Y:26319774-C-A | ** | |||||||
| hg19:Y:28498203-T-C hg38:Y:26352056-T-C | ** | |||||||
| hg19:Y:28517346-A-T hg38:Y:26371199-A-T | ** | |||||||
| hg19:Y:28520509-G-A hg38:Y:26374362-G-A | ** | |||||||
| hg19:Y:28567084-G-T hg38:Y:26420937-G-T | ** | |||||||
| hg19:Y:28600447-AG-A hg38:Y:26454300-AG-A | ** | |||||||
| hg19:Y:28600460-T-G hg38:Y:26454313-T-G | ** | |||||||
| hg19:Y:28724986-C-A hg38:Y:26578839-C-A | ** | |||||||
| hg19:Y:28728566-G-C hg38:Y:26582419-G-C | ** | |||||||
| hg19:Y:28761479-C-A hg38:Y:26615332-C-A | ** | |||||||
| hg19:Y:28761522-C-A hg38:Y:26615375-C-A | ** | |||||||
| hg19:Y:28812322-A-G hg38:Y:26666175-A-G | ** | |||||||
| hg38:Y:56822649-G-T | ** | |||||||
| hg38:Y:56840977-A-G | ** | |||||||
| hg38:Y:56875271-A-G | ** | |||||||
| hg19:Y:13485210-C-T hg38:Y:11329534-C-T | FT444187 | *** | ||||||
| hg19:Y:16491493-T-G hg38:Y:14379613-T-G | *** | |||||||
| hg19:Y:13740768-A-AAATGG hg38:Y:11585092-A-AAATGG | DYZ17 | 4×AATGG | *** | |||||
| hg19:Y:13463721-T-A,G hg38:Y:11308045-T-A,G | *** | |||||||
| hg19:Y:20014829-C-T hg38:Y:17902949-C-T | P5_Prx | *** | ||||||
| hg19:Y:22278928-C-G hg38:Y:20117042-C-G | DYZ19 | *** | *** | |||||
| hg19:Y:22285910-C-A hg38:Y:20124024-C-A | DYZ19 | *** | ||||||
| hg19:Y:22450395-A-G hg38:Y:20288509-A-G | DYZ19 | *** | ||||||
| hg19:Y:24113703-G-T hg38:Y:21967556-G-T | P3_b1 | *** | ||||||
| hg19:Y:25000491-T-G hg38:Y:22854344-T-G | g1 | *** | ||||||
| hg19:Y:25049005-A-C hg38:Y:22902858-A-C | g1 | *** | ||||||
| hg38:Y:10802290-C-A | *** | |||||||
| hg19:Y:13488882-G-A hg38:Y:11333206-G-A | *** | |||||||
| hg19:Y:17346142-CTTTTT-C,CTT hg38:Y:15234262-CTTTTT-C,CTT | 18×T | *** | ||||||
| hg19:Y:19302765-G-T hg38:Y:17190885-G-T | *** | |||||||
| hg38:Y:10683358-C-A | *** | |||||||
| hg38:Y:10689877-C-T | *** | |||||||
| hg38:Y:11649623-G-A | DYZ17 | *** | ||||||
| hg19:Y:5772538-G-T hg38:Y:5904497-G-T | *** | |||||||
| hg38:Y:10802280-C-A | *** | |||||||
| hg38:Y:11014301-GCATTC-G | *** | |||||||
| hg38:Y:11660131-A-G | DYZ17 | *** | ||||||
| hg19:Y:16352020-G-T hg38:Y:14240140-G-T | *** | |||||||
| hg19:Y:20989154-CATATAT-C,CATAT hg38:Y:18827268-CATATAT-C,CATAT | P4_Dst | 19×AT | *** | |||||
| hg19:Y:22079490-C-A hg38:Y:19917604-C-A | *** | |||||||
| hg19:Y:24400007-A-G hg38:Y:22253860-A-G | *** | |||||||
| hg19:Y:24406639-G-T hg38:Y:22260492-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
| All | McDonald | YFull | |
| Kit: B29340 | 10878511 | 7904070 | 7995639 |
| Kit: B29340 | 9994221 | 8099366 | 7961027 |
| Used in age calculations | 10878511 | 8099366 | 7995639 |
| Counts of SNPs | 6 | 5 |
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