McGuire

FGC: 6PN7S, FTDNA: 226869 , YFull-FGC: YF01451
MDKA Birth: Ireland 1816

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > L513/S215/DF1 > S5668 > Z16340 > FGC9807 > FGC9795 > FGC9804 > FGC9809 > Z16334 > FGC9800 > Z16337 > BY3093

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
6PN7S		Manual
Edits
3564071-A-G 3696030-A-G FGC9813 +
7037480-C-A 7169439-C-A FGC9814 YY+
7122762-G-T 7254721-G-T FGC9815 Y+
14845512-C-T 12733578-C-T FGC9817 YY+
21264747-G-C 19102861-G-C FGC9818 YY+
21444156-C-T 19282270-C-T FGC9819 YY+
27454371-A-G 25308224-A-G FGC7749 P1_Y2 *
2966727-C-T 3098686-C-T FGC9812 *
23077631-T-C 20915745-T-C FGC9820 Y*
23109480-C-A 20947594-C-A FGC9821 Y*
58998661-A-T 56852514-A-T **
59028567-T-C 56882420-T-C **
58843970-G-C 56746901-C-G **
9931330-T-A 10093721-T-A **
10011344-A-G 10173735-A-G **
9942475-G-C 10104866-G-C **
13432553-C-T 11276877-C-T **
9934038-C-G 10096429-C-G **
19937284-G-GCCCC 17825404-G-GCCCC P5_Prx 13×C**
22344142-C-G 20182256-C-G DYZ19 **
13877960-T-A 11757254-T-A A13700 **
7536073-T-A 7668032-T-A **
15215195-C-T 13103281-C-T **
15320655-AGAG-A 13208761-AGAG-A **
4408904-G-GAAAA 4540863-G-GAAAA 13×A**
14609822-AT-A **
5786608-C-CAAAAAAAAAAAAAA 5918567-C-CAAAAAAAAAAAAAA 20×A**
13419165-G-GA 11263489-G-GA 8×A**
14612455-TGATAGATAGATAGATAGATA-T 12500661-TGATAGATAGATA-T 14×GATA**
16340147-G-GAAAA 14228267-G-GAAAA 22×A**
58846432-TTCCATTCCATTCAAA-T 56744414-CTGGAATGGATTTGAA-C **
22449126-G-T 20287240-G-T DYZ19 ***
22481429-G-C 20319543-G-C DYZ19 ***
13203913-C-T 11048237-C-T ***
13203929-G-A 11048253-G-A ***
13203936-A-T 11048260-A-T ***
13203943-T-G 11048267-T-G ***
22361076-C-T 20199190-C-T DYZ19 ***
58874979-GCATTC-G 56715862-AAATGG-A 5×CATTC***
13449696-CTCCAT-C 11294020-CTCCAT-C 11×TCCAT***
13482818-A-C 11327142-A-C ***
22360155-G-T 20198269-G-T DYZ19 ***
13475909-T-G 11320233-T-G ***
13475919-A-G 11320243-A-G ***
13203922-C-T 11048246-C-T ***
13203925-C-T 11048249-C-T ***
58866871-A-C 56724000-T-G ***
22343082-A-T 20181196-A-T DYZ19 ***
22480992-G-T 20319106-G-T DYZ19 ***
58967654-N-A 56821507-N-A ***
22268200-G-T 20106314-G-T DYZ19 ***
22353012-G-A 20191126-G-A DYZ19 ***
22352897-A-T 20191011-A-T DYZ19 ***
13468668-T-C 11312992-T-C BY85795 ***
58910566-C-G 56680305-G-C ***
22266205-C-G 20104319-C-G DYZ19 ***
22365910-G-T 20204024-G-T DYZ19 ***
9936539-T-C 10098930-T-C ***
13129553-T-A 10619039-T-A ***
13129640-G-T 10619126-G-T ***
13129655-A-G 10619141-A-G ***
13129671-A-G 10619157-A-G ***
13129672-T-C 10619158-T-C ***
13129673-T-C 10619159-T-C ***
13129674-T-C 10619160-T-C ***
13129675-A-T 10619161-A-T ***
13129686-A-T 10619172-A-T ***
13432706-C-T 11277030-C-T ***
22232221-T-A 20070335-T-A DYZ19 ***
22236420-T-A 20074534-T-A DYZ19 ***
22252852-G-T 20090966-G-T DYZ19 ***
22263807-G-T 20101921-G-T BY43709 DYZ19 ***
22266310-G-A 20104424-G-A DYZ19 ***
22268260-C-A 20106374-C-A DYZ19 ***
22268278-G-A 20106392-G-A DYZ19 ***
22268293-A-G 20106407-A-G DYZ19 ***
22268331-A-C 20106445-A-C DYZ19 ***
22289708-C-T 20127822-C-T BY22909 DYZ19 ***
22300959-T-G 20139073-T-G DYZ19 ***
22337544-T-C 20175658-T-C DYZ19 ***
22337548-G-C 20175662-G-C DYZ19 ***
22337579-C-G 20175693-C-G DYZ19 ***
22360260-G-T 20198374-G-T DYZ19 ***
22360669-G-T 20198783-G-T DYZ19 ***
22360686-G-T 20198800-G-T DYZ19 ***
22366508-A-G 20204622-A-G DYZ19 ***
22366828-G-T 20204942-G-T DYZ19 ***
22366834-G-A 20204948-G-A DYZ19 ***
22504754-A-G 20342868-A-G DYZ19 ***
22504768-G-T 20342882-G-T DYZ19 ***
25268596-G-A 23122449-G-A P2_r1 ***
27902178-C-T 25756031-C-T P1_Y2 ***
27902189-C-T 25756042-C-T P1_Y2 ***
58823172-C-T 56767699-G-A ***
58826761-T-A 56764110-A-T ***
58831551-T-C 56759320-A-G ***
58841073-C-T 56749798-G-A ***
58843467-G-C 56747404-C-G ***
58843631-T-A 56747240-A-T ***
58843794-T-C 56747077-A-G ***
58846255-G-C 56744616-C-G ***
58861589-G-T 56729282-C-A ***
58872971-C-T 56717900-G-A ***
58874543-C-A 56716328-G-T ***
58874574-C-G 56716297-G-C ***
58877098-A-T 56713773-T-A ***
58890316-C-A 56700555-G-T ***
58890337-A-G 56700534-T-C ***
22480908-AT-GC 20319022-AT-GC DYZ19 ***
13474628-TCT-GCC 11318952-TCT-GCC ***
22337562-A-AC 20175676-A-AC DYZ19 ***
28819198-ATC-GTA 26673051-ATC-GTA ***
9940615-TC-CA 10103006-TC-CA ***
13129659-AT-A 10619145-AT-A ***
13129671-ATTTA-GCCCT 10619157-ATTTA-GCCCT ***
13203922-CGGCATTG-TGGTATTA 11048246-CGGCATTG-TGGTATTA ***
13266695-CA-AC 11111019-CA-AC ***
13483081-AGTT-TGTC 11327405-AGTT-TGTC ***
13488959-GCCCA-TCGCC 11333283-GCCCA-TCGCC ***
13688265-CGGA-TGGG 11532589-CGGA-TGGG ***
22113187-C-CAAAAAA 19951301-C-CAAAAAA 23×A***
22337200-CATGTCC-TATTTCG 20175314-CATGTCC-TATTTCG DYZ19 ***
22337234-GG-AA 20175348-GG-AA DYZ19 ***
22337544-TACGG-CACGC 20175658-TACGG-CACGC DYZ19 ***
22337567-AGG-TGT 20175681-AGG-TGT DYZ19 ***
22337576-GTCC-TTCG 20175690-GTCC-TTCG DYZ19 ***
22341149-CTTCTC-GCTCAT 20179263-CTTCTC-GCTCAT DYZ19 ***
22361311-GGCTC-TGCTA 20199425-GGCTC-TGCTA DYZ19 ***
22366649-ATT-GTG 20204763-ATT-GTG DYZ19 ***
22488489-GGTTTCTGT-AGTGTCTTC 20326603-GGTTTCTGT-AGTGTCTTC DYZ19 ***
22495804-AGTGT-TGTGA 20333918-AGTGT-TGTGA DYZ19 ***
26228689-C-CTTTT 24082542-C-CTTTT P1_Y1 27×T***
28586775-CA-TG 26440628-CA-TG ***
28819210-GGCAT-CGCAA 26673063-GGCAT-CGCAA ***
58843446-GT-AC 56747424-AC-GT ***
58843791-TTTTGAA-ATTCGAT 56747074-TTCAAAA-ATCGAAT ***
58843820-ACTTCCAGAACATTCCA-CTTTCGACACCCAGCCT 56747035-TGGAATGTTCTGGAAGT-AGGCTGGGTGTCGAAAG ***
58866483-CAATT-TAATA 56724384-AATTG-TATTA ***
58884397-TG-AT 56706473-CA-AT ***
13483238-TTG-GCC 11327562-TTG-GCC ***
58829147-T-A 56761724-A-T ***
22257034-G-T 20095148-G-T DYZ19 ***
22268357-G-T 20106471-G-T DYZ19 ***
22268350-A-G 20106464-A-G DYZ19 ***
13485322-G-A 11329646-G-A ***
22268348-A-G 20106462-A-G DYZ19 ***
22257030-C-G 20095144-C-G DYZ19 ***
58893237-T-G 56697634-A-C ***
22480947-T-A 20319061-T-A DYZ19 ***
22341240-T-C 20179354-T-C DYZ19 ***
13484485-G-C 11328809-G-C ***
22504831-G-T 20342945-G-T DYZ19 ***
13484526-C-A 11328850-C-A ***
21154904-C-T 18993018-C-T ***
22236377-G-C 20074491-G-C DYZ19 ***
22252916-G-T 20091030-G-T DYZ19 ***
22257072-G-A 20095186-G-A DYZ19 ***
22257084-T-C 20095198-T-C DYZ19 ***
22257091-T-G 20095205-T-G DYZ19 ***
22257103-T-A 20095217-T-A DYZ19 ***
22268290-C-A 20106404-C-A DYZ19 ***
22324860-C-T 20162974-C-T DYZ19 ***
22360301-A-T 20198415-A-T DYZ19 ***
22365680-G-A 20203794-G-A DYZ19 ***
22366039-G-T 20204153-G-T DYZ19 ***
22366408-G-T 20204522-G-T DYZ19 ***
22366429-C-A 20204543-C-A DYZ19 ***
22366487-T-C 20204601-T-C DYZ19 ***
22366494-T-G 20204608-T-G DYZ19 ***
22366532-T-A 20204646-T-A DYZ19 ***
22366839-C-T 20204953-C-T DYZ19 ***
22366863-G-A 20204977-G-A DYZ19 ***
22481053-G-A 20319167-G-A DYZ19 ***
22488395-C-G 20326509-C-G DYZ19 ***
22495737-A-T 20333851-A-T DYZ19 ***
22496139-C-G 20334253-C-G DYZ19 ***
22503330-A-T 20341444-A-T DYZ19 ***
22503352-T-C 20341466-T-C DYZ19 ***
22503372-T-C 20341486-T-C DYZ19 ***
58833484-C-T 56757387-G-A ***
58833499-A-G 56757372-T-C ***
58840600-C-T 56750271-G-A ***
58843821-C-T 56747050-G-A ***
58843825-C-G 56747046-G-C ***
58843829-A-C 56747042-T-G ***
58843836-A-T 56747035-T-A ***
58844750-C-G 56746121-G-C ***
58844855-C-A 56746016-G-T ***
22268348-ATATC-GTGCA 20106462-ATATC-GTGCA DYZ19 ***
22297249-GTT-CAG 20135363-GTT-CAG DYZ19 ***
13745078-AC-TG 11589402-AC-TG ***
22268314-T-TA 20106428-T-TA DYZ19 ***
22268318-TTT-GTG 20106432-TTT-GTG DYZ19 ***
22268341-TTT-ATC 20106455-TTT-ATC DYZ19 ***
22341613-ACAGA-CCAGC 20179727-ACAGA-CCAGC DYZ19 ***
22357341-ACC-CCT 20195455-ACC-CCT DYZ19 ***
22365977-GGTGGCAGCA-TGTTACATAG 20204091-GGTGGCAGCA-TGTTACATAG DYZ19 ***
22366465-TTTT-CTTA 20204579-TTTT-CTTA DYZ19 ***
22435760-AGTT-TGTG 20273874-AGTT-TGTG DYZ19 ***
22481030-AG-CT 20319144-AG-CT DYZ19 ***
22503357-ACAGA-CCAGG 20341471-ACAGA-CCAGG DYZ19 ***
22503401-AAC-CAG 20341515-AAC-CAG DYZ19 ***
27636974-GATT-CATC 25490827-GATT-CATC P1_Y2 ***
58829353-CGA-TGC 56761516-TCG-GCA ***
58843776-GTA-ATT 56747093-TAC-AAT ***
58867167-TTTCCATTCCATTTCA-T 56723679-AGGAATGGAATGAAAT-A ***
58838310-T-C 56752561-A-G ***
9940615-T-C 10103006-T-C FGC32446 ***
13798576-N-A 11677870-A-. ***
13475961-A-C 11320285-A-C ***
13476019-G-A 11320343-G-A ***
22248431-C-T 20086545-C-T DYZ19 ***
13476008-G-A 11320332-G-A ***
14491317-T-C ***
13484493-T-A 11328817-T-A ***
22236528-T-A 20074642-T-A DYZ19 ***
58819939-A-G 56770932-T-C ***
13129594-A-T 10619080-A-T ***
14491315-A-C ***
14491316-G-A ***
22248333-A-G 20086447-A-G DYZ19 ***
22248355-T-A 20086469-T-A DYZ19 ***
22297109-G-T 20135223-G-T DYZ19 ***
22342588-T-G 20180702-T-G DYZ19 ***
22342938-G-C 20181052-G-C DYZ19 ***
22357269-G-T 20195383-G-T FGC78741 DYZ19 ***
22360043-T-G 20198157-T-G DYZ19 ***
22366040-T-C 20204154-T-C DYZ19 ***
22366930-A-T 20205044-A-T DYZ19 ***
22421456-T-A 20259570-T-A DYZ19 ***
22435970-C-T 20274084-C-T DYZ19 ***
22480708-A-G 20318822-A-G DYZ19 ***
22481215-G-C 20319329-G-C DYZ19 ***
22481253-T-G 20319367-T-G DYZ19 ***
22504640-G-C 20342754-G-C DYZ19 ***
58819922-A-T 56770949-T-A ***
58874474-C-A 56716397-G-T ***
58877042-C-T 56713829-G-A ***
58877045-G-C 56713826-C-G ***
58877047-A-T 56713824-T-A ***
58877099-G-C 56713772-C-G ***
58877134-T-C 56713737-A-G ***
22268395-C-CAAGA 20106509-C-CAAGA DYZ19 ***
13129621-GCAC-ACAT 10619107-GCAC-ACAT ***
19126436-C-CAAAAAAAAA 17014556-C-CAAAAAAAAA 25×A***
22262664-AC-A 20100778-AC-A DYZ19 ***
22266203-ATC-TTG 20104317-ATC-TTG DYZ19 ***
22268290-CTTAGTGGTGACC-ATTGGTGTTGAGT 20106404-CTTAGTGGTGACC-ATTGGTGTTGAGT DYZ19 ***
22421582-TTTAA-CTTAG 20259696-TTTAA-CTTAG DYZ19 ***
22421811-CTTACGG-TTCACGC 20259925-CTTACGG-TTCACGC DYZ19 ***
22435753-AGT-TAC 20273867-AGT-TAC DYZ19 ***
22263789-G-T 20101903-G-T DYZ19 ***
22263780-G-A 20101894-G-A DYZ19 ***
22263781-T-C 20101895-T-C DYZ19 ***
9940872-C-A 10103263-C-A ***
13484790-A-T 11329114-A-T ***
9940915-G-A 10103306-G-A ***
22309360-T-G 20147474-T-G DYZ19 ***
22426385-A-C 20264499-A-C DYZ19 ***
13484480-A-C 11328804-A-C ***
13716314-A-T 11560638-A-T A3832 ***
13721616-C-A 11565940-C-A 4×ATGGA***
13740793-G-C 11585117-G-C ***
22252974-A-T 20091088-A-T DYZ19 ***
22292233-T-A 20130347-T-A DYZ19 ***
22309337-G-T 20147451-G-T DYZ19 ***
22309366-C-T 20147480-C-T DYZ19 ***
22365713-T-A 20203827-T-A DYZ19 ***
22367193-C-T 20205307-C-T DYZ19 ***
22367204-A-G 20205318-A-G DYZ19 ***
22367219-C-G 20205333-C-G DYZ19 ***
22367227-T-G 20205341-T-G DYZ19 ***
58833538-T-C 56757333-A-G ***
58846680-A-C 56744191-T-G ***
58859194-A-T 56731677-T-A ***
58859215-A-T 56731656-T-A ***
58890017-C-G 56700854-G-C ***
58891545-T-A 56699326-A-T ***
58909135-A-C 56681736-T-G ***
58844025-CA-C 56746844-AT-A ***
22232108-GTTC-AGTG 20070222-GTTC-AGTG DYZ19 ***
22236408-AT-TG 20074522-AT-TG DYZ19 ***
22263788-TGTTACAAC-CGTTTCAGT 20101902-TGTTACAAC-CGTTTCAGT DYZ19 ***
22367149-GTGTCCT-CTTTCCA 20205263-GTGTCCT-CTTTCCA DYZ19 ***
22367160-GTCTT-TTCTG 20205274-GTCTT-TTCTG DYZ19 ***
27060079-CTATTTC-TTTTTTT 24913932-CTATTTC-TTTTTTT P1_r4 ***
27151329-GTA-TTT 25005182-GTA-TTT P1_g3 ***
13798575-N-A 11677869-A-. ***
22309303-T-G 20147417-T-G DYZ19 ***
22309284-C-G 20147398-C-G DYZ19 ***
20367902-A-T 18206016-A-T P5_Dst ***
20367923-A-T 18206037-A-T P5_Dst ***
20367944-C-A 18206058-C-A P5_Dst ***
20367949-G-C 18206063-G-C P5_Dst ***
20367955-G-T 18206069-G-T P5_Dst ***
20367984-C-A 18206098-C-A P5_Dst ***
20574938-G-T 18413052-G-T P5_Dst ***
22236529-A-T 20074643-A-T DYZ19 ***
22241420-C-A 20079534-C-A DYZ19 ***
22257098-T-A 20095212-T-A DYZ19 ***
22266217-T-C 20104331-T-C DYZ19 ***
22328163-A-T 20166277-A-T DYZ19 ***
22366433-G-C 20204547-G-C DYZ19 ***
22366438-G-T 20204552-G-T DYZ19 ***
22495980-G-T 20334094-G-T DYZ19 ***
22496026-C-T 20334140-C-T DYZ19 ***
22503508-C-G 20341622-C-G DYZ19 ***
58836741-T-C 56754130-A-G ***
58840466-C-T 56750405-G-A ***
58848529-G-C 56742342-C-G ***
58865710-A-T 56725161-T-A ***
58879381-A-T 56711490-T-A ***
13445668-GAAA-G 11289992-GAAA-G 9×A***
22309358-ATT-GTG 20147472-ATT-GTG DYZ19 ***
22235093-G-GC 20073207-G-GC DYZ19 ***
22236528-TA-AT 20074642-TA-AT DYZ19 ***
22252956-TACGT-AGTGG 20091070-TACGT-AGTGG DYZ19 ***
22309290-CT-C 20147404-CT-C DYZ19 ***
22309295-C-CT 20147409-C-CT DYZ19 ***
22309318-GC-CG 20147432-GC-CG DYZ19 ***
22367198-CT-AG 20205312-CT-AG DYZ19 ***
22496000-TGCA-GGCG 20334114-TGCA-GGCG DYZ19 ***
10090420-A-T 10252811-A-T ***
10090424-C-T 10252815-C-T ***
13111839-G-A 10601325-G-A ***
20368324-G-C 18206438-G-C P5_Dst ***
22337203-G-T 20175317-G-T DYZ19 ***
22337206-C-G 20175320-C-G DYZ19 ***
22337250-C-T 20175364-C-T DYZ19 ***
22358966-C-G 20197080-C-G DYZ19 ***
22502030-A-T 20340144-A-T DYZ19 ***
27417788-A-C 25271641-A-C P1_g3 ***
22249323-TC-AT 20087437-TC-AT DYZ19 ***
22252925-CACT-GACC 20091039-CACT-GACC DYZ19 ***
22292088-TTT-CTA 20130202-TTT-CTA DYZ19 ***
22503500-GG-TT 20341614-GG-TT DYZ19 ***
13129663-TC-CTT 10619149-TC-CTT ***
22495773-TCCAA-CTTCAG 20333887-TCCAA-CTTCAG DYZ19 ***
58823284-TCTCAT-A 56767582-ATGAGA-T ***
22234363-C-A 20072477-C-A BY188343 DYZ19 ***
10064091-A-G 10226482-A-G ***
22337314-G-C 20175428-G-C DYZ19 ***
18403055-G-A 16291175-G-A P6_Gap ***
18403071-A-T 16291191-A-T P6_Gap ***
20355685-C-A 18193799-C-A P5_Dst ***
20355740-A-C 18193854-A-C P5_Dst ***
20355747-C-T 18193861-C-T P5_Dst ***
20355759-G-A 18193873-G-A P5_Dst ***
20355774-C-T 18193888-C-T P5_Dst ***
20355775-G-T 18193889-G-T P5_Dst ***
20574077-G-A 18412191-G-A P5_Dst ***
22344209-A-G 20182323-A-G DYZ19 ***
58843246-C-A 56747625-G-T ***
20252796-C-CAAAAAAA 18090910-C-CAAAAAAA P5_Dst 24×A***
22309544-GTGGT-CTGGG 20147658-GTGGT-CTGGG DYZ19 ***
10090758-G-A 10253149-G-A ***
13143956-N-A 10633442-N-A ***
13143957-N-C 10633443-N-C ***
13143958-N-T 10633444-N-T ***
13143959-N-C 10633445-N-C ***
13143960-N-C 10633446-N-C ***
58967653-N-T 56821506-N-T ***
20424844-G-A 18262958-G-A FT452633 P5_Dst ***
9429170-A-G 9591561-A-G ***
13193950-N-T 11038274-T-. ***
17187619-G-T 15075739-G-T ***
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28083047-T-A 25936900-T-A P1_Y2 ***
28083048-T-A 25936901-T-A P1_Y2 ***
28083061-A-C 25936914-A-C P1_Y2 ***
28398870-A-C 26252723-A-C P1_gr2 ***
28398872-T-A 26252725-T-A P1_gr2 ***
28398874-T-A 26252727-T-A P1_gr2 ***
28398877-G-C 26252730-G-C P1_gr2 ***
58828536-C-G 56762335-G-C ***
58830892-T-C 56759979-A-G ***
58830896-G-T 56759975-C-A ***
58830898-A-C 56759973-T-G ***
58830903-T-G 56759968-A-C ***
58831487-T-G 56759384-A-C ***
58831506-C-T 56759365-G-A ***
58831514-T-A 56759357-A-T ***
58833092-T-G 56757779-A-C ***
58835979-G-T 56754892-C-A ***
58838251-C-T 56752620-G-A ***
58841330-G-T 56749541-C-A ***
58843201-T-A 56747670-A-T ***
58843653-T-G 56747218-A-C ***
58843661-A-G 56747210-T-C ***
58843750-A-G 56747121-T-C ***
58844361-A-C 56746510-T-G ***
58844387-C-A 56746484-G-T ***
58844595-C-T 56746276-G-A ***
58844871-A-C 56746000-T-G ***
58844883-C-T 56745988-G-A ***
58844955-C-A 56745916-G-T ***
58846649-G-T 56744222-C-A ***
58846709-T-C 56744162-A-G ***
58848501-A-T 56742370-T-A ***
58848535-G-C 56742336-C-G ***
58854382-C-G 56736489-G-C ***
58855014-C-T 56735857-G-A ***
58855027-C-A 56735844-G-T ***
58855036-T-A 56735835-A-T ***
58855199-A-T 56735672-T-A ***
58856442-T-A 56734429-A-T ***
58857543-G-A 56733328-C-T ***
58859226-G-C 56731645-C-G ***
58861467-C-G 56729404-G-C ***
58861644-A-T 56729227-T-A ***
58865683-C-T 56725188-G-A ***
58865690-A-G 56725181-T-C ***
58865719-T-A 56725152-A-T ***
58865808-A-C 56725063-T-G ***
58865822-T-C 56725049-A-G ***
58865824-T-A 56725047-A-T ***
58868586-C-T 56722285-G-A ***
58868604-C-T 56722267-G-A ***
58872380-A-T 56718491-T-A ***
58872383-T-G 56718488-A-C ***
58872392-G-A 56718479-C-T ***
58872398-T-A 56718473-A-T ***
58872407-T-A 56718464-A-T ***
58872410-T-C 56718461-A-G ***
58872413-A-T 56718458-T-A ***
58874423-C-G 56716448-G-C ***
58876552-A-T 56714319-T-A ***
58876848-C-T 56714023-G-A ***
58877049-C-G 56713822-G-C ***
58877120-C-A 56713751-G-T ***
58881408-A-T 56709463-T-A ***
58881418-G-A 56709453-C-T ***
58881821-C-T 56709050-G-A ***
58881822-C-G 56709049-G-C ***
58881825-T-A 56709046-A-T ***
58881830-T-A 56709041-A-T ***
58881833-T-A 56709038-A-T ***
58881841-C-T 56709030-G-A ***
58881850-T-G 56709021-A-C ***
58881862-T-C 56709009-A-G ***
58889901-A-C 56700970-T-G ***
58890426-G-C 56700445-C-G ***
58898508-C-G 56692363-G-C ***
58900034-A-G 56690837-T-C ***
58903746-C-T 56687125-G-A ***
58903748-A-T 56687123-T-A ***
58904051-C-A 56686820-G-T ***
58904060-G-A 56686811-C-T ***
58907254-A-G 56683617-T-C ***
58908514-G-C 56682357-C-G ***
58908515-A-C 56682356-T-G ***
58908532-A-T 56682339-T-A ***
58909167-G-A 56681704-C-T ***
58909184-G-C 56681687-C-G ***
58911344-C-T 56679527-G-A ***
58911356-T-C 56679515-A-G ***
58911360-G-A 56679511-C-T ***
58911361-T-A 56679510-A-T ***
58911363-C-A 56679508-G-T ***
58911382-T-C 56679489-A-G ***
58913090-T-G 56677781-A-C ***
58913094-C-A 56677777-G-T ***
58913158-T-G 56677713-A-C ***
58916605-A-G 56674266-T-C ***
3550568-AC-A 3682527-AC-A ***
7534406-G-GTT 7666365-G-GTT 19×T***
8644324-C-CAAAA 8776283-C-CAAAA 32×A***
15358788-G-AAA 13246908-G-AAA ***
13488510-AG-CA 11332834-AG-CA ***
3640830-C-CTCCTTCCT 3772789-C-CTCCTTCCT 12×TCCT***
4067508-C-CTTT 4199467-C-CTTT 29×T***
4098639-C-CA 4230598-C-CA 20×A***
4636092-T-TAAAAA 4768051-T-TAAAAA 15×A***
5241238-CTTTTT-C 5373197-CTTTTT-C 15×T***
5378192-C-CA 5510151-C-CA 21×A***
6260221-AAGCAGAGCCAAAAGGGTTGGAGACTCAAAAAACTAGCCCTGA-TCTGTCCCAGACTGGGATCGAGGAACAATTTCCC 6392180-AAGCAGAGCCAAAAGGGTTGGAGACTCAAAAAACTAGCCCTGA-TCTGTCCCAGACTGGGATCGAGGAACAATTTCCC IR3_Dst ***
6260265-TTGTGTTAG-T 6392224-TTGTGTTAG-T IR3_Dst ***
6260275-CA-C 6392234-CA-C IR3_Dst ***
6260281-C-CT 6392240-C-CT IR3_Dst ***
6260285-TAAGCACTCTC-G 6392244-TAAGCACTCTC-G IR3_Dst ***
6260333-AA-CC 6392292-AA-CC IR3_Dst ***
7179734-G-GTGTTTT 7311693-G-GTGTTTT 25×T***
7269610-C-CTTT 7401569-C-CTTT 22×T***
7534392-G-GTTT 7666351-G-GTTT 13×T***
8563745-C-CT 8695704-C-CT 21×T***
8826675-TCTC-AAAA 8958634-TCTC-AAAA ***
9771054-A-ATTTTAACTTTTTT 9933445-A-ATTTTAACTTTTTT 16×T***
9942043-A-ATTT 10104434-A-ATTT 28×T***
9951397-CAGACT-TAGACC 10113788-CAGACT-TAGACC ***
13138204-TCCATC-T 10627690-TCCATC-T ***
13140073-CGAGTGCGTGTGATTCCATTAAATCAG-C 10629559-CGAGTGCGTGTGATTCCATTAAATCAG-C ***
13199164-C-CAAAAAAAA 11043488-C-CAAAAAAAA 18×A***
13203971-CACCCCGCCTC-GGTAT 11048295-CACCCCGCCTC-GGTAT ***
13214289-A-ATCT 11058613-A-ATCT 19×T***
13475917-TAA-CAG 11320241-TAA-CAG ***
13500110-CAAAAAA-C 11344434-CAAAAAA-C 16×A***
13611988-G-GTTTTTTTT 11456312-G-GTTTTTTTT 19×T***
13682963-GAGTA-AAGTG 11527287-GAGTA-AAGTG ***
16242402-C-CTTTTT 14130522-C-CTTTTT 18×T***
17459485-C-CAAAAAA 15347605-C-CAAAAAA 25×A***
18255888-T-TAAAAAA 16144008-T-TAAAAAA 22×A***
19775302-C-CTT 17663422-C-CTT P5_Prx 32×T***
19948153-CCCTCCCTCCCTCCCTCCCTCCCTCCCTC-T 17836273-CCCTCCCTCCCTCCCTCCCTCCCTCCCTC-T P5_Prx ***
20326037-G-TTTTTTTT 18164151-G-TTTTTTTT P5_Dst ***
20424861-GAG-AAGA 18262975-GAG-AAGA P5_Dst ***
20533500-T-TA 18371614-T-TA P5_Dst 9×A***
20568537-C-CAA 18406651-C-CAA P5_Dst 27×A***
22234333-TAT-AA 20072447-TAT-AA DYZ19 ***
22234368-TC-GA 20072482-TC-GA DYZ19 ***
22248514-GTA-TTC 20086628-GTA-TTC DYZ19 ***
22248527-TC-T 20086641-TC-T DYZ19 ***
22248532-CTG-TTGA 20086646-CTG-TTGA DYZ19 ***
22248543-TTGG-GTGT 20086657-TTGG-GTGT DYZ19 ***
22248578-CT-C 20086692-CT-C DYZ19 ***
22248583-C-CT 20086697-C-CT DYZ19 ***
22252965-GG-TT 20091079-GG-TT DYZ19 ***
22293076-TTTTG-GGTTA 20131190-TTTTG-GGTTA DYZ19 ***
22360164-C-CCCCT 20198278-C-CCCCT DYZ19 ***
22366002-ACCAGAGG-TCCAGAGT 20204116-ACCAGAGG-TCCAGAGT DYZ19 ***
22366759-ATTGTTTCTC-TTTGTTCCTT 20204873-ATTGTTTCTC-TTTGTTCCTT DYZ19 ***
22420942-CGG-TTGT 20259056-CGG-TTGT DYZ19 ***
22420965-GGTA-AGTG 20259079-GGTA-AGTG DYZ19 ***
22421286-GAAC-TTACA 20259400-GAAC-TTACA DYZ19 ***
22421293-AGAA-GGAG 20259407-AGAA-GGAG DYZ19 ***
22421312-TTAC-CAGT 20259426-TTAC-CAGT DYZ19 ***
22421360-CC-AT 20259474-CC-AT DYZ19 ***
22481673-AT-TA 20319787-AT-TA DYZ19 ***
22481715-GA-G 20319829-GA-G DYZ19 ***
22502688-GCACG-CCACT 20340802-GCACG-CCACT DYZ19 ***
22504362-GGTTTCTGT-TGTCTCTTC 20342476-GGTTTCTGT-TGTCTCTTC DYZ19 ***
22504612-AGTT-TGTC 20342726-AGTT-TGTC DYZ19 ***
22504626-GGCAT-AGCAG 20342740-GGCAT-AGCAG DYZ19 ***
22504708-CCAGT-GCAGA 20342822-CCAGT-GCAGA DYZ19 ***
22996969-GATAT-G 20835083-GATAT-G 21×AT***
23127414-C-CAAAA 20965528-C-CAAAA 24×A***
23801733-C-CAAAA 21639847-C-CAAAA 31×A***
25524693-C-CTTTTTTT 23378546-C-CTTTTTTT P1_gr1 33×T***
26538252-C-CA 24392105-C-CA P1_g2 17×A***
28375653-TA-T 26229506-TA-T P1_gr2 14×A***
58823348-ATTCA-GATCT 56767519-TGAAT-AGATC ***
58831521-GC-CA 56759349-GC-TG ***
58831542-CA-GT 56759328-TG-AC ***
58845143-TTCCATTGATTTGAC-T 56745707-GAATGGAGTCAAATC-G ***
58855013-TC-CT 56735857-GA-AG ***
58906649-CATTCTATTCA-C 56684211-ATGAATAGAAT-A ***
58981977-TTCCACTCCAGTCCACTC-T 56835830-TTCCACTCCAGTCCACTC-T ***
59007959-C-CAAAA 56861812-C-CAAAA 26×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual22230377-C-A20068491-C-AYFull: 697A 1155C 1T
Manual22240464-G-C20078578-G-CYFull: 2A 657C 2T 1790G
Manual25081068-C-T22934921-C-TYFull: 145C 82T