Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > FGC19633 > FGC32575 > FGC46883

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC-BigY
DEQJG
28606955-C-T 26460808-C-T FGC46889 +
4162883-TA-T 4294842-TA-T +
17399300-T-C 15287420-T-C FGC46884 YY+
7261661-G-A 7393620-G-A FGC46881 YY*
23507250-C-T 21345364-C-T FGC46887 YY*
4091808-G-T 4223767-G-T FGC46879 *
13932140-C-CAT 11811434-C-CAT 13×AT**
25024319-T-C 22878172-T-C g1 **
22360244-G-A 20198358-G-A DYZ19 **
58998489-G-GA 56852342-G-GA **
28819166-A-C 26673019-A-C **
19562051-A-C 17450171-A-C CTS10597 **
19562063-G-A 17450183-G-A **
22360148-T-G 20198262-T-G DYZ19 **
9953093-A-C 10115484-A-C **
13256773-T-C 11101097-T-C **
2673779-A-C 2805738-A-C **
59000770-T-TTGG 56854623-T-TTGG **
22260729-T-C 20098843-T-C DYZ19 ***
22341311-A-G 20179425-A-G DYZ19 ***
22341309-T-A 20179423-T-A DYZ19 ***
22327401-A-C 20165515-A-C DYZ19 ***
22292258-A-G 20130372-A-G DYZ19 ***
9783000-G-A 9945391-G-A ***
22292202-A-G 20130316-A-G DYZ19 ***
22282387-A-T 20120501-A-T DYZ19 ***
22282311-C-A 20120425-C-A DYZ19 ***
22282060-T-C 20120174-T-C DYZ19 ***
22282051-T-C 20120165-T-C DYZ19 ***
10094920-G-A 10257311-G-A ***
22249335-A-T 20087449-A-T DYZ19 ***
22341336-T-C 20179450-T-C DYZ19 ***
20989043-T-G 18827157-T-G P4_Dst ***
20617915-G-A 18456029-G-A P4_Prx ***
20603890-A-G 18442004-A-G P5_Dst ***
20603878-A-G 18441992-A-G P5_Dst ***
20569109-A-C 18407223-A-C P5_Dst ***
20510867-A-T 18348981-A-T P5_Dst ***
20510849-A-T 18348963-A-T P5_Dst ***
20470077-A-T 18308191-A-T P5_Dst ***
20425065-C-T 18263179-C-T P5_Dst ***
20425008-C-G 18263122-C-G P5_Dst ***
22227950-A-C 20066064-A-C DYZ19 ***
22353875-A-T 20191989-A-T DYZ19 ***
22353870-G-A 20191984-G-A DYZ19 ***
24387892-C-A 22241745-C-A ***
25369181-A-G 23223034-A-G P2_r2 ***
25356830-A-C 23210683-A-C P2_r2 ***
25322645-A-T 23176498-A-T P2_r1 ***
25192279-G-T 23046132-G-T g1 ***
25161288-G-A 23015141-G-A g1 15×A***
25108546-A-C 22962399-A-C g1 ***
9700745-C-A 9863136-C-A IR3_Prx ***
24901940-G-T 22755793-G-T g1 ***
24858494-T-A 22712347-T-A P3_b2 ***
24858487-G-C 22712340-G-C P3_b2 ***
24413520-G-C 22267373-G-C ***
24278589-C-T 22132442-C-T P3_b1 ***
20325941-C-A 18164055-C-A P5_Dst ***
24207562-G-A 22061415-G-A P3_b1 ***
23693005-A-C 21531119-A-C ***
23526552-T-C 21364666-T-C ***
9703276-T-A 9865667-T-A IR3_Prx ***
23223405-T-A 21061519-T-A ***
23120905-A-C 20959019-A-C ***
22713798-A-G 20551912-A-G ***
22503503-A-G 20341617-A-G DYZ19 ***
22503441-C-G 20341555-C-G DYZ19 ***
22503412-T-A 20341526-T-A DYZ19 ***
22368346-G-A 20206460-G-A DYZ19 ***
20325987-G-T 18164101-G-T P5_Dst ***
20212664-A-C 18050778-A-C P5_Dst ***
10094930-T-G 10257321-T-G ***
13256868-T-G 11101192-T-G ***
17324140-G-T 15212260-G-T ***
16344400-C-T 14232520-C-T 5×CTT***
10094884-C-T 10257275-C-T ***
15468678-C-A 13356798-C-A 23×A***
14704059-T-A 12592125-T-A ***
13731761-T-G 11576085-T-G ***
13726727-T-C 11571051-T-C ***
13726697-C-T 11571021-C-T ***
13726637-C-A 11570961-C-A ***
13704391-C-A 11548715-C-A ***
13255784-G-C 11100108-G-C ***
17324153-A-G 15212273-A-G ***
13223514-A-G 11067838-A-G ***
13222682-A-G 11067006-A-G ***
13222586-G-C 11066910-G-C ***
13133499-C-A 10622985-C-A ***
13129489-G-T 10618975-G-T ***
13127033-T-A 10616519-T-A ***
13110642-C-T 10600128-C-T ***
13109960-A-G 10599446-A-G ***
10094900-T-A 10257291-T-A ***
13109933-C-T 10599419-C-T ***
13109930-G-T 10599416-G-T ***
17324144-G-T 15212264-G-T ***
10094870-G-C 10257261-G-C ***
20045566-G-T 17933686-G-T P5_Prx ***
19582918-G-A 17471038-G-A P5_Prx ***
19771201-A-C 17659321-A-C P5_Prx ***
19758866-A-C 17646986-A-C P5_Prx ***
19721498-A-C 17609618-A-C P5_Prx ***
19583008-T-C 17471128-T-C P5_Prx ***
19582948-A-G 17471068-A-G P5_Prx ***
10090661-T-G 10253052-T-G ***
10090895-C-T 10253286-C-T ***
25369213-A-G 23223066-A-G P2_r2 ***
19582928-A-T 17471048-A-T P5_Prx ***
19582923-A-G 17471043-A-G P5_Prx ***
19582919-G-T 17471039-G-T P5_Prx ***
19582917-A-G 17471037-A-G P5_Prx ***
18366066-C-A 16254186-C-A P6_Prx ***
19582906-C-G 17471026-C-G P5_Prx ***
10090949-T-A 10253340-T-A ***
19582903-G-A 17471023-G-A P5_Prx ***
10090962-G-A 10253353-G-A ***
19386663-T-C 17274783-T-C ***
19386602-A-G 17274722-A-G ***
10091003-T-G 10253394-T-G ***
18972022-T-G 16860142-T-G ***
18619005-A-G 16507125-A-G ***
18491384-G-T 16379504-G-T P6_Dst ***
18402466-A-C 16290586-A-C P6_Gap ***
19582934-G-A 17471054-G-A P5_Prx ***
25939561-C-A 23793414-C-A P1_Y1 ***
25466464-A-C 23320317-A-C P2_r2 ***
10040738-GG-CT 10203129-GG-CT ***
13453590-AG-GT 11297914-AG-GT ***
13439738-TGAGG-CGAGA 11284062-TGAGG-CGAGA ***
13255774-TAGC-CAGG 11100098-TAGC-CAGG ***
13223511-AGGA-GGGG 11067835-AGGA-GGGG ***
13222365-AAG-GAGGC 11066689-AAG-GAGGC ***
13136681-ATTA-TTTG 10626167-ATTA-TTTG ***
13133473-TTTAT-GTTAC 10622959-TTTAT-GTTAC ***
10094938-GATG-AATA 10257329-GATG-AATA ***
10094906-CTG-TTC 10257297-CTG-TTC ***
10091011-ATTTTTG-TTTTATT 10253402-ATTTTTG-TTTTATT ***
10090934-CAATC-GGATA 10253325-CAATC-GGATA ***
10090906-TCTAC-ACTAT 10253297-TCTAC-ACTAT ***
10018690-AAGGG-GAGGT 10181081-AAGGG-GAGGT ***
13669532-GAATGGTGTCAAATGGAAT-TATTGGAGTCGAGTAGAAC 11513856-GAATGGTGTCAAATGGAAT-TATTGGAGTCGAGTAGAAC ***
10017790-CC-ACT 10180181-CC-ACT ***
10007794-GGAC-TGAG 10170185-GGAC-TGAG ***
10007741-GAGCT-AAGCC 10170132-GAGCT-AAGCC ***
9997853-ACCGG-CCC 10160244-ACCGG-CCC ***
9920644-CC-TT 10083035-CC-TT ***
9030408-A-AAAAAG 9192799-A-AAAAAG 17×GAAAG***
9645653-C-CT 9808044-C-CT IR3_Prx 20×T***
22257953-ATAGAG-CCAGAA 20096067-ATAGAG-CCAGAA DYZ19 ***
59006962-TA-T 56860815-TA-T 8×A***
5999363-C-CA 6131322-C-CA 20×A***
15340402-G-TT 13228521-G-TT ***
13448943-GCACGA-CCACGC 11293267-GCACGA-CCACGC ***
13481593-CCT-TCC 11325917-CCT-TCC ***
13669585-TGGAAT-ACGAAA 11513909-TGGAAT-ACGAAA ***
59341659-A-T 57195508-A-T ***
22223276-TAAG-GAAC 20061390-TAAG-GAAC DYZ19 ***
58878846-GGC-TGT 56712023-GCC-ACA ***
58846454-CCAGATG-TCATATT 56744411-CATCTGG-AATATGA ***
58846445-AAA-CAT 56744424-TTT-ATG ***
58846424-TCATATT-CCATTCC 56744441-AATATGA-GGAATGG ***
58835083-ATCCTTTCCATTCCATTTCATTCCAT-A 56755755-AGAAAGGAATGGAATGAAATGGAATG-A ***
58828593-TGAGTCCATTCCAT-CGAG 56762265-ATGGAATGGACTCA-CTCG ***
28796280-GCTGC-ACTGG 26650133-GCTGC-ACTGG ***
24447128-A-AAAGT 22300981-A-AAAGT ***
22996919-GG-AA 20835033-GG-AA ***
22360134-TT-A 20198248-TT-A DYZ19 ***
22352819-ATTTA-CTTTG 20190933-ATTTA-CTTTG DYZ19 ***
22297250-TT-AG 20135364-TT-AG DYZ19 ***
20325989-CTG-TTT 18164103-CTG-TTT P5_Dst ***
13737025-TTT-CTG 11581349-TTT-CTG ***
16666079-AT-A 14554199-AT-A 25×T***
14787828-A-AT 12675898-A-. 26×T***
14704072-T-TAA 12592138-T-TAA ***
14704060-A-ACG 12592126-A-ACG ***
14025578-G-GAAAGAAAA 11904872-G-GAAAGAAAA ***
13856604-GATCG-AATCA 11735898-GATCG-AATCA ***
13831734-TTGC-CTGG 11711028-TTGC-CTGG ***
13814115-TCAAATAC-AGATATAG 11693409-TCAAATAC-AGATATAG ***
13809019-CAAAC-GAATT 11688313-CAAAC-GAATT ***
13809013-CCA-TC 11688307-CCA-TC ***
13806170-AAT-TAA 11685464-AAT-TAA ***
13806151-AC-TG 11685445-AC-TG ***
13737065-TAG-AAC 11581389-TAG-AAC ***
10043413-AGACTTGC-GGCCTTCG 10205804-AGACTTGC-GGCCTTCG ***
59253026-A-G 57106876-A-G ***
25715209-T-G 23569062-T-G P1_b3 ***
26906667-G-A 24760520-G-A P1_r3 ***
27928978-C-A 25782831-C-A P1_Y2 ***
27907225-A-C 25761078-A-C P1_Y2 ***
27829320-A-C 25683173-A-C P1_Y2 ***
27546114-A-C 25399967-A-C P1_Y2 ***
27518872-G-A 25372725-G-A P1_Y2 ***
27518869-A-G 25372722-A-G P1_Y2 ***
27455045-G-A 25308898-G-A P1_Y2 ***
27238576-T-G 25092429-T-G P1_g3 ***
27151266-T-C 25005119-T-C P1_g3 ***
26996482-A-C 24850335-A-C P1_r4 ***
26992151-T-C 24846004-T-C P1_r4 ***
26906684-T-C 24760537-T-C P1_r3 ***
26810544-G-C 24664397-G-C P1_g2 ***
27952453-A-T 25806306-A-T P1_Y2 ***
26780804-C-G 24634657-C-G P1_g2 ***
26780768-T-G 24634621-T-G P1_g2 ***
26776929-A-C 24630782-A-C P1_g2 ***
26722637-T-G 24576490-T-G P1_g2 ***
26713776-T-A 24567629-T-A P1_g2 ***
26418555-T-A 24272408-T-A P1_Y1 ***
26334820-A-C 24188673-A-C P1_Y1 ***
26205527-A-C 24059380-A-C P1_Y1 ***
26177872-A-C 24031725-A-C P1_Y1 ***
9350878-A-C 9513269-A-C ***
25898723-A-T 23752576-A-T P1_Y1 ***
25841718-T-G 23695571-T-G P1_b3 ***
27929727-A-G 25783580-A-G P1_Y2 ***
27971907-T-G 25825760-T-G P1_Y2 ***
59247428-A-G 57101278-A-G ***
58846454-C-T 56744417-G-A ***
59111589-G-A 56965441-A-. ***
59034362-A-G 56888215-A-G ***
58904391-G-C 56686480-C-G ***
58904381-A-C 56686490-T-G ***
58903883-T-A 56686988-A-T ***
58888131-G-C 56702740-C-G ***
58878362-G-C 56712509-C-G ***
58870973-T-C 56719898-A-G ***
58868675-T-C 56722196-A-G ***
58858797-A-C 56732074-T-G ***
58846460-G-T 56744411-C-A ***
58846457-G-T 56744414-C-A ***
58846445-A-C 56744426-T-G ***
28146593-A-G 26000446-A-G P1_b4 ***
58846430-T-C 56744441-A-G ***
58846429-T-C 56744442-A-G ***
58846428-A-T 56744443-T-A ***
58846424-T-C 56744447-A-G ***
58845027-G-T 56745844-C-A ***
58843952-A-C 56746919-T-G ***
58842200-A-G 56748671-T-C ***
58835426-G-T 56755445-C-A ***
58830058-C-G 56760813-G-C ***
58823727-G-A 56767144-C-T ***
28557279-T-G 26411132-T-G ***
28209445-G-T 26063298-G-T P1_b4 ***
28158895-C-A 26012748-C-A P1_b4 ***
9508766-C-T 9671157-C-T ***
5088982-A-G 5220941-A-G ***
8481390-T-A 8613349-T-A ***
13859575-AAA-CAG 11738869-AAA-CAG ***
27423515-G-GTA 25277368-G-GTA P1_g3 24×TA***
13867011-TCTGGAAT-ATTGAAC 11746305-TCTGGAAT-ATTGAAC ***
10073306-C-T 10235697-C-T ***
10064432-T-C 10226823-T-C ***
10050278-G-A 10212669-G-A ***
10049863-T-C 10212254-T-C ***
10049858-A-T 10212249-A-T ***
10049843-T-C 10212234-T-C ***
10044639-T-C 10207030-T-C ***
10044616-G-T 10207007-G-T ***
9953059-C-T 10115450-C-T ***
3790878-G-A 3922837-G-A 21×TA***
10090620-G-A 10253011-G-A ***
4429318-G-GA 4561277-G-GA 15×A***
58892529-C-G 56698342-G-C ***
22241179-GATAA-AACAT 20079293-GATAA-AACAT DYZ19 ***
13109820-G-C 10599306-G-C ***
13109796-C-T 10599282-C-T ***
13120632-TA-T 10610118-TA-T 8×A***
13869489-AT-CG 11748783-AT-CG ***
20510932-A-T 18349046-A-T P5_Dst ***
22366818-C-T 20204932-C-T DYZ19 ***
13109962-A-T 10599448-A-T ***
9952765-G-C 10115156-G-C ***
22352839-C-G 20190953-C-G DYZ19 ***
22352815-A-C 20190929-A-C DYZ19 ***
22360135-T-A 20198249-T-A DYZ19 ***
13141006-CCCATTCCATT-C 10630492-CCCATTCCATT-C 10×CCATT***
14667680-CT-C 12555746-CT-C ***
10015657-CTGCTGC-G 10178048-CTGCTGC-G ***
22503526-C-T 20341640-C-T DYZ19 ***
22481722-T-C 20319836-T-C DYZ19 ***
19377133-A-G 17265253-A-G ***
9950671-T-C 10113062-T-C ***
9950643-T-C 10113034-T-C ***
10050177-TT-CC 10212568-TT-CC ***
9231698-AACACACAC-A 9394089-AACACACAC-A 22×AC***
20510937-G-T 18349051-G-T P5_Dst ***
28724174-AT-A 26578027-AT-A 20×T***
13659351-TGAAT-GGAAA 11503675-TGAAT-GGAAA ***
5430808-C-A 5562767-C-A 25×A***
22341305-C-A 20179419-C-A DYZ19 ***
13854317-CC-TG 11733611-CC-TG ***
10094529-AT-CC 10256920-AT-CC ***
10090920-A-G 10253311-A-G ***
13851710-TTGA-AGAT 11731004-TTGA-AGAT ***
10067434-ACCA-GCCG 10229825-ACCA-GCCG ***
13857513-CC-AT 11736807-CC-AT ***
13851695-ACAAATG-TCGAATT 11730989-ACAAATG-TCGAATT ***
13120598-A-C 10610084-A-C ***
13460747-T-G 11305071-T-G ***
10068919-C-G 10231310-C-G ***
14491296-T-G ***
10067111-AATACAGT-GAGG 10229502-AATACAGT-GAGG ***
9915625-TGGAG-GGGAT 10078016-TGGAG-GGGAT ***
58973675-TTTCCTTTCCATTCCA-T 56827528-TTTCCTTTCCATTCCA-T ***
21823564-C-G 19661678-C-G 12×G***
13806212-G-T 11685506-G-T ***
10043360-A-T 10205751-A-T ***
13109853-G-A 10599339-G-A ***
10064376-G-A 10226767-G-A ***
10016645-CCGCGTTGACACTC-GGACGCTGATGCTG 10179036-CCGCGTTGACACTC-GGACGCTGATGCTG ***
10095016-G-C 10257407-G-C ***
22282037-T-A 20120151-T-A DYZ19 ***
13659237-G-A 11503561-G-A ***
58891824-A-C 56699047-T-G ***
59005698-TTGTATGGA-GTGTGTGGT 56859551-TTGTATGGA-GTGTGTGGT ***
58838076-TG-AT 56752794-CA-AT ***
10066965-CCAAC-TCAAT 10229356-CCAAC-TCAAT ***
9953463-ACTGCTTAG-TCTGGTTAT 10115854-ACTGCTTAG-TCTGGTTAT ***
9944214-ACATC-GCATT 10106605-ACATC-GCATT ***
13464525-TGT-GGC 11308849-TGT-GGC ***
13109812-T-A 10599298-T-A ***
13859935-GAATG-AAATA 11739229-GAATG-AAATA ***
9951570-A-C 10113961-A-C ***
9944862-T-C 10107253-T-C ***
9951613-T-C 10114004-T-C ***
9951601-G-C 10113992-G-C ***
9951729-A-G 10114120-A-G ***
10043318-T-G 10205709-T-G ***
58873097-A-T 56717774-T-A ***
26089061-C-CA 23942914-C-CA P1_Y1 20×A***
58887801-T-C 56703070-A-G ***
58998532-A-G 56852385-A-G ***
9940906-CTG-TTA 10103297-CTG-TTA ***
10067069-C-T 10229460-C-T ***
9828869-G-GA 9991260-G-GA 13×A***
13859991-TATTGAATGGG-CATCGA 11739285-TATTGAATGGG-CATCGA ***
13806193-A-G 11685487-A-G ***
10042540-T-C 10204931-T-C ***
13222251-T-G 11066575-T-G ***
13222231-T-G 11066555-T-G ***
13135569-G-A 10625055-G-A ***
10064777-A-T 10227168-A-T ***
10064371-A-G 10226762-A-G ***
10050273-A-G 10212664-A-G ***
10049815-G-C 10212206-G-C ***
10044874-C-T 10207265-C-T ***
10044857-T-C 10207248-T-C ***
10044248-GA-G 10206639-GA-G ***
10043530-C-T 10205921-C-T ***
10043390-T-A 10205781-T-A ***
10042527-C-G 10204918-C-G ***
58980527-T-TTCCATTCCATTCCAC 56834380-T-TTCCATTCCATTCCAC ***
10040725-C-A 10203116-C-A ***
9957123-G-T 10119514-G-T ***
9957118-G-T 10119509-G-T ***
9957089-T-C 10119480-T-C ***
9957060-A-G 10119451-A-G ***
9950682-A-G 10113073-A-G ***
9931177-T-C 10093568-T-C ***
5393270-T-G 5525229-T-G ***
4136640-TTA-T 4268599-TTA-T ***
13257286-TATA-T 11101610-TATA-T ***
59013640-TTTTTTTT-ATATATATA 56867493-TTTTTTTT-ATATATATA ***
13811067-AGGAAT-A 11690361-AGGAAT-A 11×GGAAT***
10043362-C-T 10205753-C-T ***
10042333-A-G 10204724-A-G ***
8112587-A-G 8244546-A-G ***
22354564-T-C 20192678-T-C DYZ19 ***
13804457-T-A 11683751-T-A ***
22341304-A-T 20179418-A-T DYZ19 ***
9920157-C-G 10082548-C-G ***
13669601-G-T 11513925-G-T ***
10061446-T-C 10223837-T-C ***
22354571-G-C 20192685-G-C DYZ19 ***
22281896-T-G 20120010-T-G DYZ19 ***
22354562-T-A 20192676-T-A DYZ19 ***
10071430-C-G 10233821-C-G ***
10061400-T-C 10223791-T-C ***
28597859-G-T 26451712-G-T ***
10044942-G-C 10207333-G-C ***
19387112-G-GTCATAAATT 17275232-G-GTCATAAATT ***
13867984-ACT-GCG 11747278-ACT-GCG ***
13867969-TCT-ACG 11747263-TCT-ACG ***
13867380-ATT-GTG 11746674-ATT-GTG ***
13867351-TGGG-AGGA 11746645-TGGG-AGGA ***
13867328-AACTCGAAT-GATTGAAC 11746622-AACTCGAAT-GATTGAAC ***
13864542-TATGTCATT-AACGGCAAC 11743836-TATGTCATT-AACGGCAAC ***
13864518-CTCGCATGG-GTGGAATAT 11743812-CTCGCATGG-GTGGAATAT ***
13861604-GAAT-AATA 11740898-GAAT-AATA ***
7225853-T-G 7357812-T-G ***
6191264-T-G 6323223-T-G IR3_Dst ***
4936053-C-A 5068012-C-A 26×A***
4275190-T-C 4407149-T-C ***
3902042-T-G 4034001-T-G ***
13863145-TATT-CATC 11742439-TATT-CATC ***
13860363-TAGAT-CGGAA 11739657-TAGAT-CGGAA ***
10042352-T-A 10204743-T-A ***
13824822-AG-TT 11704116-AG-TT ***
10044843-TTTG-CTTT 10207234-TTTG-CTTT ***
10017801-CCTTC-TCTTA 10180192-CCTTC-TCTTA ***
10015832-TTCC-CTCT 10178223-TTCC-CTCT ***
9953614-CT-TA 10116005-CT-TA ***
9953564-CAAAA-TAAAC 10115955-CAAAA-TAAAC ***
9920473-GC-TT 10082864-GC-TT ***
9915665-ACTATA-TATATC 10078056-ACTATA-TATATC ***
10042367-AA-TG 10204758-AA-TG ***
10043546-ATA-TTG 10205937-ATA-TTG ***
13851586-AGAATAG-GATATCA 11730880-AGAATAG-GATATCA ***
13833096-GGC-TGA 11712390-GGC-TGA ***
10015565-AT-GC 10177956-AT-GC ***
13859590-GAACAGATTCGAAT-AAACGGACTCAATA 11738884-GAACAGATTCGAAT-AAACGGACTCAATA ***
10067468-TCACA-CTACAT 10229859-TCACA-CTACAT ***
13839244-AAG-TAA 11718538-AAG-TAA ***
20510927-G-T 18349041-G-T P5_Dst ***
19668845-T-A 17556965-T-A P5_Prx ***
14704048-A-G 12592114-A-G ***
13813678-A-G 11692972-A-G ***
10070018-G-T 10232409-G-T ***
9920461-T-G 10082852-T-G ***
9909005-G-A 10071396-G-A ***
10043540-A-G 10205931-A-G ***
10067489-G-C 10229880-G-C ***
10067444-A-G 10229835-A-G ***
10042819-T-A 10205210-T-A ***
10064432-TG-CA 10226823-TG-CA ***
13132068-AC-CA 10621554-AC-CA ***
13860094-TGAATGC-CGAGTGG 11739388-TGAATGC-CGAGTGG ***
13825037-AC-GA 11704331-AC-GA ***
13859706-GATGG-AATGA 11739000-GATGG-AATGA ***
13859684-TGAATG-AGAGTT 11738978-TGAATG-AGAGTT ***
13854285-ATA-CTC 11733579-ATA-CTC ***
13851329-ATGT-GTGG 11730623-ATGT-GTGG ***
13851277-TAATCA-GAAATG 11730571-TAATCA-GAAATG ***
13851257-CAATA-AAATG 11730551-CAATA-AAATG ***
13851002-TACCT-GACCA 11730296-TACCT-GACCA ***
13846297-TTAA-CTCT 11725591-TTAA-CTCT ***
13839357-GAT-AAA 11718651-GAT-AAA ***
13838794-CGGAAATG-TGGAGATT 11718088-CGGAAATG-TGGAGATT ***
13838787-C-GTTGGAGTAGAATGGA 11718081-C-GTTGGAGTAGAATGGA ***
13833616-AGACTGGAAA-GGATTGAAC 11712910-AGACTGGAAA-GGATTGAAC ***
13804498-TGAG-GGAA 11683792-TGAG-GGAA ***
13137115-TC-CT 10626601-TC-CT ***
13804489-GATTG-AAATA 11683783-GATTG-AAATA ***
13707692-TGC-GGA 11552016-TGC-GGA ***
13659372-AC-GA 11503696-AC-GA ***
13659279-ATGTAATA-GTGAAATG 11503603-ATGTAATA-GTGAAATG ***
13658896-AGAA-GGAC 11503220-AGAA-GGAC ***
13658867-AAATGGAATT-GAATCAATG 11503191-AAATGGAATT-GAATCAATG ***
13658787-AAT-TAA 11503111-AAT-TAA ***
13658772-AAGTGTAATG-GATTGGAATA 11503096-AAGTGTAATG-GATTGGAATA ***
13648149-TCG-ACA 11492473-TCG-ACA ***
13461266-AGTAGG-TGTGGT 11305590-AGTAGG-TGTGGT ***
13457953-CTCCACTCCACTCCAC-TTCCATTCCAT 11302277-CTCCACTCCACTCCAC-TTCCATTCCAT ***
13449630-AAAA-GAC 11293954-AAAA-GAC ***
58981637-TCC-CCCCTCCA 56835490-TCC-CCCCTCCA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Buchanan1324141011-14121212131330189-1011112515192915-15-17-18111219-241615171736-38121212915-1681010810101222-231610121215811222013121113111112123515916122526211211121211913121011113012132413101020151813241712162412241710141791111



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