Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > A21822 > Y18901

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
20338781-G-A 18176895-G-A P5_Dst A+
20671017-G-A 18509131-G-A P4_Prx A****
58981190-C-T 56835043-C-T A*
20048447-C-T 17936567-C-T P5_Prx A****
19901569-G-T 17789689-G-T P5_Prx A****
19840997-C-T 17729117-C-T P5_Prx A****
19781664-C-T 17669784-C-T P5_Prx A****
22265826-C-G 20103940-C-G DYZ19 A****
20973161-C-T 18811275-C-T P4_Dst A*
24264273-T-G 22118126-T-G P3_b1 A****
56836716-C-T A*
20751613-T-C 18589727-T-C P4_Prx A****
14796529-A-AT 12684600-A-AT 11×TA*
56836268-C-T A*
22438252-G-A 20276366-G-A DYZ19 A*
56832557-C-T A*
56831329-C-T A*
26180573-G-T 24034426-G-T P1_Y1 A****
56829737-A-T A*
16103474-A-G 13991594-A-G P8_Prx A*
56834320-C-T A*
13451565-A-G 11295889-A-G A*
56834293-C-T A*
56831274-C-T A*
6728996-C-CA 6860955-C-CA 9×AA*
8034473-A-AT 8166432-A-AT 10×TA*
56831175-A-G A*
56830711-A-G A*
10799945-GCACTC-G +
21292008-C-G 19130122-C-G Y18905 YY++
21361574-A-C 19199688-A-C Y18910 YY++
21387810-C-A 19225924-C-A Y18907 YY++
21856090-T-C 19694204-T-C Y18912 YY++
23020114-A-G 20858228-A-G A13913 YY++
18930515-C-T 16818635-C-T FT87128 YY+
18930020-T-C 16818140-T-C FT87127 YY+
25944628-T-C 23798481-T-C BY44234 P1_Y1 ++
11001586-C-A FT393272 +
23364464-T-C 21202578-T-C Y18913 YY++
23536143-T-A 21374257-T-A Y18909 YY++
23972720-T-C 21826573-T-C Y18911 Y++
17435141-C-CA 15323261-C-CA +
14449896-A-T 12329169-A-T YY+
11657051-C-T FT92552 +
13255735-C-T 11100059-C-T FT441913 +
23112576-G-A 20950690-G-A Y18908 YY++
20807601-ATTC-A 18645715-ATTC-A P4_Gap ++
13934074-C-T 11813368-C-T FT86693 Y+
5176407-T-C 5308366-T-C FT86131 +
8587210-A-T 8719169-A-T Y18902 YY++
19476809-C-A 17364929-C-A F12753 S22340 Z16736 YY++
7034411-G-A 7166370-G-A Y18900 YY++
6935417-C-T 7067376-C-T Y18899 YY++
6396626-A-G 6528585-A-G BY42676 ++
5246911-A-G 5378870-A-G Y18893 ++
23501584-C-T 21339698-C-T BY44192 YY++
21955734-C-T 19793848-C-T FT87270 Y+
5177245-G-C 5309204-G-C FT86132 +
5683395-G-A 5815354-G-A FT86301 +
5725234-G-A 5857193-G-A FT86318 +
13127642-G-T 10617128-G-T Z29745 +
28544007-A-G 26397860-A-G FT87410 +
28637812-G-T 26491665-G-T FT87435 +
28586067-T-C 26439920-T-C Y44649 ++
4711412-C-T 4843371-C-T FT85983 +
7840659-A-C 7972618-A-C Y39162 YY++
21583597-C-A 19421711-C-A FT87245 Y+
13584440-C-G 11428764-C-G BY43143 +**
19126533-G-A 17014653-G-A Y18904 YY**+
18931486-A-G 16819606-A-G Y18903 YY++
18741623-T-C 16629743-T-C Y18906 YY++
18642795-G-A 16530915-G-A Y18898 BZ28 YY++
17673197-C-T 15561317-C-T Y18894 YY++
17278611-T-C 15166731-T-C Y18897 YY++
14000474-G-A 11879768-G-A FT86729 Y+
14206391-T-C 12085685-T-C Y18895 YY++
17045258-C-T 14933378-C-T Y18896 YY++
17110799-GTGC-G 14998919-GTGC-G ++
22422607-C-A 20260721-C-A DYZ19 ****
11014366-C-G *
5357890-A-T 5489849-A-T *
10661229-C-CTCCAT *
4370572-A-C 4502531-A-C *
2775104-C-T 2907063-C-T **
21737793-C-A 19575907-C-A Y43506 **
3867534-GTT-G 3999493-GTT-G 12×T**
13352657-A-C 11196981-A-C **
4830656-G-C 4962615-G-C **
4816955-T-TA 4948914-T-TA **
3370592-A-G 3502551-A-G **
3774836-C-T 3906795-C-T **
4163837-C-A 4295796-C-A **
20628484-TG-T 18466598-TG-T P4_Prx **
4276805-T-A 4408764-T-A FT74810 **
9136669-TTATATA-T 9299060-TTATATA-T Z17685 11×TA**
15401893-C-A 13290013-C-A Y40961 **
16503148-T-C 14391268-T-C **
6347824-GAA-G 6479783-GAA-G **
22458057-G-A 20296171-G-A Z7896 DYZ19 **
22873640-C-T 20711754-C-T **
19206948-A-T 17095068-A-T **
19202773-A-G 17090893-A-G **
6807163-C-T 6939122-C-T FT178727 **
18297399-G-A 16185519-G-A P6_Prx **
22311315-C-T 20149429-C-T DYZ19 **
6550220-T-C 6682179-T-C **
14670427-T-C 12558493-T-C **
14123084-T-C 12002378-T-C **
27328491-G-T 25182344-G-T P1_g3 **
14661047-CA-C 12549112-CA-C **
14245780-A-AT 12125074-A-AT 10×T**
15477546-A-T 13365666-A-T **
16301021-C-A 14189141-C-A FTA45702 ***
24388553-T-C 22242406-T-C ***
9402535-G-A 9564926-G-A ***
14445527-G-C 12324800-G-C ***
23274087-T-A 21112201-T-A ***
22107634-CGTGT-C,CGT 19945748-CGTGT-C,CGT 17×GT***
19545728-T-C 17433848-T-C ***
19066299-A-G 16954419-A-G ***
13477267-C-A 11321591-C-A ***
19066292-G-C 16954412-G-C ***
18626582-CTTTT-C,CTTT 16514702-CTTTT-C,CTTT 25×T***
15477291-CAAA-C,CAAAA 13365411-CAAA-C,CAAAA 18×A***
17169345-TA-T 15057465-TA-T ***
17169337-C-CT 15057457-C-CT ***
16784444-TG-T 14672564-TG-T ***
17784121-CA-C,CAA 15672241-CA-C,CAA 15×A***
9799134-CAAAAAAA-C 9961525-CAAAAAAA-C 24×A***
7630459-T-C 7762418-T-C ***
9239622-C-T 9402013-C-T ***
22436115-G-T 20274229-G-T DYZ19 ***
22430733-G-A 20268847-G-A DYZ19 ***
22428204-G-C 20266318-G-C DYZ19 ***
22365113-G-A 20203227-G-A DYZ19 ***
22359107-C-T 20197221-C-T DYZ19 ***
22346141-A-C 20184255-A-C DYZ19 ******
22309626-G-A 20147740-G-A DYZ19 ***
22280271-C-A 20118385-C-A DYZ19 ***
9369645-C-T 9532036-C-T ***
9329055-C-T 9491446-C-T ***
22237315-C-A,T 20075429-C-A,T DYZ19 ***
24084997-CA-C 21938850-CA-C P3_b1 ***
22278990-G-A 20117104-G-A DYZ19 ******
6125957-C-A 6257916-C-A ***
15138012-CTTTT-C 13026099-CTTTT-C 15×T***
22233640-T-A 20071754-T-A BY12899 DYZ19 ***
22233630-G-A 20071744-G-A BY213569 DYZ19 ***
22233629-T-A 20071743-T-A BY213568 DYZ19 ***
22233604-C-G 20071718-C-G BY5947 DYZ19 ***
17490081-CAA-C 15378201-CAA-C 14×A***
13139606-TATTCC-T 10629092-TATTCC-T 7×ATTCC***
9312111-T-G 9474502-T-G BY17614 ***
22453377-G-A 20291491-G-A DYZ19 ***
22448424-T-G 20286538-T-G DYZ19 ***
24928612-C-T 22782465-C-T g1 ***
5242518-G-A 5374477-G-A ***
7135386-ATTTTT-A 7267345-ATTTTT-A 22×T***
4287191-T-C 4419150-T-C ***
2845081-A-G 2977040-A-G ***
14319543-A-G 12198837-A-G ***
4130259-T-TA 4262218-T-TA 10×A***
3985968-T-TA 4117927-T-TA 9×A***
14319546-C-T 12198840-C-T ***
20826397-CTTTT-C,CTT 18664511-CTTTT-C,CTT P4_Gap 17×T***
56841273-C-A ***
19206741-TAAAAA-T 17094861-TAAAAA-T 29×A***
7076612-CAAA-C 7208571-CAAA-C 29×A***
8216388-AT-A 8348347-AT-A 9×T***
6043970-CTTTT-C 6175929-CTTTT-C 22×T***
24961155-T-C 22815008-T-C g1 ******
8057169-GTATATA-G 8189128-GTATATA-G 12×TA***
8094872-GTA-G 8226831-GTA-G ***
26891433-C-T 24745286-C-T P1_r3 ***
26891432-G-T 24745285-G-T P1_r3 ***
25313949-C-A 23167802-C-A P2_r1 ***
25268024-A-C 23121877-A-C P2_r1 ***
25248386-G-A 23102239-G-A P2_r1 ***
25139016-T-G 22992869-T-G g1 ***
25126112-A-G 22979965-A-G g1 ***
25042390-G-T 22896243-G-T g1 ***
25000161-C-A 22854014-C-A g1 ***
56845286-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 648901082947978603587941461
Kit: 648901471742792285118231335
Used in age calculations1471742792285118231335
Counts of SNPs2926
Variant counts last updated 2022-09-29 03:18:50.

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