Calhoun
FGC: ELV7F, FTDNA: N112723MDKA Birth: Ireland 1688
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC ELV7F |
---|---|---|---|---|---|---|---|---|
17219554-T-C | 15107674-T-C | FGC42487 | Y | + | ||||
28572802-A-T | 26426655-A-T | FGC42492 | + | |||||
58880431-A-T | 56710440-T-A | ** | ||||||
59021928-G-GTTTT | 56875781-G-GTTTT | 9×T | ** | |||||
9430570-T-A | 9592961-T-A | ** | ||||||
3377241-G-T | 3509200-G-T | ** | ||||||
3613304-C-T | 3745263-C-T | ** | ||||||
5002837-C-T | 5134796-C-T | ** | ||||||
5898692-A-G | 6030651-A-G | ** | ||||||
6473203-C-A | 6605162-C-A | ** | ||||||
7023688-C-A | 7155647-C-A | ** | ||||||
8006188-G-A | 8138147-G-A | ** | ||||||
13349409-G-C | 11193733-G-C | ** | ||||||
13349425-T-A | 11193749-T-A | ** | ||||||
13478963-G-A | 11323287-G-A | ** | ||||||
13852275-T-C | 11731569-T-C | DYZ17 | ** | |||||
15120716-A-T | 13008803-A-T | ** | ||||||
17060196-C-T | 14948316-C-T | ** | ||||||
17060211-C-A | 14948331-C-A | ** | ||||||
17822683-G-A | 15710803-G-A | ** | ||||||
17856456-T-C | 15744576-T-C | ** | ||||||
18542524-A-G | 16430644-A-G | ** | ||||||
21744840-C-T | 19582954-C-T | ** | ||||||
22543763-C-T | 20381877-C-T | ** | ||||||
23096077-G-C | 20934191-G-C | ** | ||||||
25370909-T-C | 23224762-T-C | P2_r2 | ** | |||||
27593148-C-A | 25447001-C-A | P1_Y2 | ** | |||||
21575915-TG-T | 19414029-TG-T | ** | ||||||
22016939-TG-T | 19855053-TG-T | ** | ||||||
26834786-AAG-A | 24688639-AAG-A | P1_g2 | ** | |||||
13254790-C-G | 11099114-C-G | *** | ||||||
22223279-G-C | 20061393-G-C | DYZ19 | *** | |||||
22234658-T-C | 20072772-T-C | DYZ19 | *** | |||||
13254792-A-C | 11099116-A-C | *** | ||||||
21227375-C-CTT | 19065489-C-CTT | 22×T | *** | |||||
22446105-TAC-ACT | 20284219-TAC-ACT | DYZ19 | *** | |||||
27162020-T-TA | 25015873-T-TA | P1_g3 | 18×A | *** | ||||
13252783-G-T | 11097107-G-T | 11×T | *** | |||||
22502630-T-G | 20340744-T-G | DYZ19 | *** | |||||
22481323-A-T | 20319437-A-T | DYZ19 | *** | |||||
22266085-G-T | 20104199-G-T | DYZ19 | *** | |||||
22234799-T-C | 20072913-T-C | DYZ19 | *** | |||||
22364435-G-C | 20202549-G-C | DYZ19 | *** | |||||
22435751-T-C | 20273865-T-C | DYZ19 | *** | |||||
20333803-G-A | 18171917-G-A | P5_Dst | *** | |||||
13271775-TAAAAAA-T | 11116099-TAAAAAA-T | 12×A | *** | |||||
14842428-TG-T | 12730494-TG-T | *** | ||||||
16290810-TATAA-T | 14178930-TATAA-T | *** | ||||||
14191885-G-A | 12071179-G-A | *** | ||||||
22356801-G-C | 20194915-G-C | DYZ19 | *** | |||||
58860799-T-C | 56730072-A-G | *** | ||||||
58971310-T-C | 56825163-T-C | *** | ||||||
22309703-C-G | 20147817-C-G | DYZ19 | *** | |||||
22258117-A-G | 20096231-A-G | DYZ19 | *** | |||||
58860497-C-A | 56730374-G-T | FGC42760 FGC77919 | *** | |||||
58869463-T-C | 56721408-A-G | *** | ||||||
13459250-CCAT-TCAA | 11303574-CCAT-TCAA | *** | ||||||
26713789-C-A | 24567642-C-A | P1_g2 | *** | |||||
7545013-G-GC | 7676972-G-GC | *** | ||||||
22502177-GTGAA-TTGAG | 20340291-GTGAA-TTGAG | DYZ19 | *** | |||||
22238435-C-T | 20076549-C-T | DYZ19 | *** | |||||
22249347-T-C | 20087461-T-C | DYZ19 | *** | |||||
26713747-C-A | 24567600-C-A | P1_g2 | *** | |||||
58829858-C-T | 56761013-G-A | *** | ||||||
14937873-C-CTTTTCTTTTT | 12825948-C-CTTTTCTTTTT | *** | ||||||
58899845-C-G | 56691026-G-C | *** | ||||||
13737187-C-G | 11581511-C-G | DYZ17 | *** | |||||
13223221-T-G | 11067545-T-G | *** | ||||||
19845946-C-T | 17734066-C-T | P5_Prx | *** | |||||
22320686-A-G | 20158800-A-G | DYZ19 | *** | |||||
22349332-T-G | 20187446-T-G | DYZ19 | *** | |||||
13485537-TATGTC-CGTGTA | 11329861-TATGTC-CGTGTA | *** | ||||||
22356768-CATA-GATG | 20194882-CATA-GATG | DYZ19 | *** | |||||
13461103-A-C | 11305427-A-C | *** | ||||||
22229496-A-G | 20067610-A-G | DYZ19 | *** | |||||
5785641-T-A | 5917600-T-A | *** | ||||||
24389730-G-T | 22243583-G-T | *** | ||||||
22355035-C-T | 20193149-C-T | DYZ19 | *** | |||||
22480747-C-T | 20318861-C-T | DYZ19 | *** | |||||
22480746-T-G | 20318860-T-G | DYZ19 | *** | |||||
13473712-T-G | 11318036-T-G | *** | ||||||
58988415-T-C | 56842268-T-C | *** | ||||||
22498933-C-G | 20337047-C-G | DYZ19 | *** | |||||
2698208-C-T | 2830167-C-T | *** | ||||||
3143096-A-T | 3275055-A-T | *** | ||||||
3207459-G-T | 3339418-G-T | *** | ||||||
3207471-G-A | 3339430-G-A | *** | ||||||
3335803-C-T | 3467762-C-T | *** | ||||||
3374841-C-A | 3506800-C-A | *** | ||||||
3561499-T-A | 3693458-T-A | *** | ||||||
3561500-C-A | 3693459-C-A | 25×A | *** | |||||
3729470-G-T | 3861429-G-T | *** | ||||||
3865153-G-A | 3997112-G-A | *** | ||||||
3875760-G-T | 4007719-G-T | *** | ||||||
4089803-G-A | 4221762-G-A | *** | ||||||
4099580-C-A | 4231539-C-A | *** | ||||||
4144890-C-T | 4276849-C-T | *** | ||||||
4577252-A-G | 4709211-A-G | *** | ||||||
4634481-C-A | 4766440-C-A | *** | ||||||
5050777-G-C | 5182736-G-C | *** | ||||||
5224749-C-A | 5356708-C-A | *** | ||||||
5241304-T-C | 5373263-T-C | *** | ||||||
5283428-G-T | 5415387-G-T | *** | ||||||
5349078-C-G | 5481037-C-G | *** | ||||||
5809520-C-T | 5941479-C-T | *** | ||||||
5812343-C-T | 5944302-C-T | *** | ||||||
5960734-A-T | 6092693-A-T | *** | ||||||
6156026-T-C | 6287985-T-C | IR3_Dst | *** | |||||
6228700-G-T | 6360659-G-T | IR3_Dst | *** | |||||
6241684-C-A | 6373643-C-A | IR3_Dst | *** | |||||
6252896-T-G | 6384855-T-G | IR3_Dst | *** | |||||
6342579-G-T | 6474538-G-T | *** | ||||||
6394743-G-C | 6526702-G-C | *** | ||||||
6688244-C-A | 6820203-C-A | *** | ||||||
7123504-G-T | 7255463-G-T | *** | ||||||
7141833-A-C | 7273792-A-C | *** | ||||||
7443238-A-G | 7575197-A-G | *** | ||||||
7633096-C-A | 7765055-C-A | *** | ||||||
8003018-T-C | 8134977-T-C | *** | ||||||
8066048-A-G | 8198007-A-G | *** | ||||||
8369806-T-C | 8501765-T-C | *** | ||||||
8964962-G-T | 9127353-G-T | *** | ||||||
9295929-C-A | 9458320-C-A | *** | ||||||
9345440-A-T | 9507831-A-T | *** | ||||||
9349161-G-A | 9511552-G-A | *** | ||||||
9369348-A-T | 9531739-A-T | *** | ||||||
9409475-A-T | 9571866-A-T | *** | ||||||
9409553-A-G | 9571944-A-G | *** | ||||||
9430390-C-A | 9592781-C-A | *** | ||||||
9557771-T-C | 9720162-T-C | IR3_Prx | *** | |||||
9682935-C-G | 9845326-C-G | IR3_Prx | *** | |||||
9799514-A-C | 9961905-A-C | *** | ||||||
9913002-C-A | 10075393-C-A | *** | ||||||
9921743-G-T | 10084134-G-T | *** | ||||||
10014965-T-G | 10177356-T-G | *** | ||||||
10038112-G-T | 10200503-G-T | *** | ||||||
10076632-T-A | 10239023-T-A | *** | ||||||
10091407-C-T | 10253798-C-T | *** | ||||||
13258359-A-C | 11102683-A-C | 9×T | *** | |||||
13262128-T-A | 11106452-T-A | *** | ||||||
13329246-C-T | 11173570-C-T | *** | ||||||
13341500-T-G | 11185824-T-G | *** | ||||||
13344752-C-G | 11189076-C-G | *** | ||||||
13375905-T-A | 11220229-T-A | *** | ||||||
13379609-T-C | 11223933-T-C | *** | ||||||
13393377-T-G | 11237701-T-G | *** | ||||||
13458914-C-T | 11303238-C-T | *** | ||||||
13461096-G-T | 11305420-G-T | *** | ||||||
13478033-G-T | 11322357-G-T | *** | ||||||
13487826-C-A | 11332150-C-A | *** | ||||||
13488137-C-A | 11332461-C-A | *** | ||||||
13488492-C-T | 11332816-C-T | *** | ||||||
13488500-A-G | 11332824-A-G | *** | ||||||
13488543-C-T | 11332867-C-T | *** | ||||||
13488589-G-A | 11332913-G-A | *** | ||||||
13488661-C-G | 11332985-C-G | *** | ||||||
13488664-C-A | 11332988-C-A | *** | ||||||
13489397-T-C | 11333721-T-C | *** | ||||||
13601966-T-G | 11446290-T-G | *** | ||||||
13742634-T-G | 11586958-T-G | DYZ17 | *** | |||||
13742681-T-C | 11587005-T-C | DYZ17 | *** | |||||
13746297-C-A | 11590621-C-A | DYZ17 | *** | |||||
13804696-G-T | 11683990-G-T | DYZ17 | *** | |||||
13873113-T-A | 11752407-T-A | *** | ||||||
13875947-A-C | 11755241-A-C | *** | ||||||
14134633-A-C | 12013927-A-C | *** | ||||||
14163047-G-A | 12042341-G-A | *** | ||||||
14163068-T-C | 12042362-T-C | *** | ||||||
14182327-G-A | 12061621-G-A | 8×A | *** | |||||
14271885-A-G | 12151179-A-G | *** | ||||||
14307053-G-C | 12186347-G-C | *** | ||||||
15047848-C-T | 12935939-C-T | *** | ||||||
15142193-G-T | 13030280-G-T | *** | ||||||
15294949-G-A | 13183048-G-A | *** | ||||||
15295675-A-T | 13183774-A-T | *** | ||||||
15480102-T-C | 13368222-T-C | *** | ||||||
15856749-C-A | 13744869-C-A | *** | ||||||
15937085-C-T | 13825205-C-T | *** | ||||||
16141651-A-T | 14029771-A-T | P8_Dst | *** | |||||
16214948-C-A | 14103068-C-A | *** | ||||||
16266338-T-G | 14154458-T-G | *** | ||||||
16738979-G-T | 14627099-G-T | *** | ||||||
16987200-C-A | 14875320-C-A | 11×A | *** | |||||
16997863-G-T | 14885983-G-T | *** | ||||||
17218859-T-C | 15106979-T-C | *** | ||||||
17432669-T-C | 15320789-T-C | *** | ||||||
17543826-T-A | 15431946-T-A | *** | ||||||
17568081-C-T | 15456201-C-T | *** | ||||||
17694657-G-A | 15582777-G-A | *** | ||||||
17797520-A-G | 15685640-A-G | *** | ||||||
17933029-A-T | 15821149-A-T | *** | ||||||
17987567-G-T | 15875687-G-T | P7_Prx | *** | |||||
18119961-C-A | 16008081-C-A | *** | ||||||
18132861-T-C | 16020981-T-C | *** | ||||||
18140722-G-T | 16028842-G-T | *** | ||||||
18283325-G-T | 16171445-G-T | P6_Prx | *** | |||||
18285674-C-A | 16173794-C-A | P6_Prx | *** | |||||
18288114-G-C | 16176234-G-C | P6_Prx | *** | |||||
18317461-T-A | 16205581-T-A | P6_Prx | 15×A | *** | ||||
18352885-G-A | 16241005-G-A | P6_Prx | *** | |||||
18380831-G-T | 16268951-G-T | P6_Prx | *** | |||||
18411485-A-C | 16299605-A-C | P6_Gap | *** | |||||
18447431-A-T | 16335551-A-T | P6_Dst | *** | |||||
18447451-C-T | 16335571-C-T | P6_Dst | *** | |||||
18469295-G-A | 16357415-G-A | P6_Dst | *** | |||||
18521774-T-C | 16409894-T-C | P6_Dst | *** | |||||
18544599-G-C | 16432719-G-C | *** | ||||||
18844437-A-G | 16732557-A-G | *** | ||||||
18975355-A-C | 16863475-A-C | *** | ||||||
19203957-T-A | 17092077-T-A | *** | ||||||
19206689-T-A | 17094809-T-A | *** | ||||||
19325766-G-T | 17213886-G-T | *** | ||||||
19604653-G-T | 17492773-G-T | P5_Prx | *** | |||||
19663133-T-C | 17551253-T-C | P5_Prx | *** | |||||
19708888-A-G | 17597008-A-G | P5_Prx | *** | |||||
19710004-C-A | 17598124-C-A | P5_Prx | *** | |||||
19740976-T-C | 17629096-T-C | P5_Prx | *** | |||||
19741185-A-C | 17629305-A-C | P5_Prx | *** | |||||
19769515-G-A | 17657635-G-A | P5_Prx | *** | |||||
19845814-T-A | 17733934-T-A | P5_Prx | *** | |||||
19853623-T-A | 17741743-T-A | P5_Prx | *** | |||||
19937319-C-T | 17825439-C-T | P5_Prx | *** | |||||
19997247-G-T | 17885367-G-T | P5_Prx | *** | |||||
20084647-G-T | 17972767-G-T | P5_Dst | *** | |||||
20326184-C-A | 18164298-C-A | P5_Dst | *** | |||||
20326250-C-T | 18164364-C-T | P5_Dst | *** | |||||
20335535-G-T | 18173649-G-T | P5_Dst | *** | |||||
20363850-A-T | 18201964-A-T | P5_Dst | *** | |||||
20500916-T-C | 18339030-T-C | P5_Dst | *** | |||||
20511023-A-T | 18349137-A-T | P5_Dst | *** | |||||
20646225-T-A | 18484339-T-A | P4_Prx | *** | |||||
20697777-C-T | 18535891-C-T | P4_Prx | *** | |||||
20723677-A-T | 18561791-A-T | P4_Prx | *** | |||||
20771676-G-T | 18609790-G-T | P4_Prx | *** | |||||
20783960-G-T | 18622074-G-T | P4_Prx | *** | |||||
20894772-G-A | 18732886-G-A | P4_Dst | *** | |||||
21213066-G-T | 19051180-G-T | *** | ||||||
21387074-G-T | 19225188-G-T | *** | ||||||
21448520-A-G | 19286634-A-G | *** | ||||||
21448703-A-T | 19286817-A-T | *** | ||||||
21789926-C-T | 19628040-C-T | *** | ||||||
21886637-C-A | 19724751-C-A | *** | ||||||
21942507-A-G | 19780621-A-G | *** | ||||||
21955594-C-A | 19793708-C-A | *** | ||||||
21997689-A-G | 19835803-A-G | *** | ||||||
21999839-G-T | 19837953-G-T | *** | ||||||
22014167-T-A | 19852281-T-A | *** | ||||||
22085135-C-G | 19923249-C-G | *** | ||||||
22085145-C-T | 19923259-C-T | *** | ||||||
22085149-G-C | 19923263-G-C | *** | ||||||
22085163-G-A | 19923277-G-A | *** | ||||||
22085185-G-A | 19923299-G-A | *** | ||||||
22085396-C-A | 19923510-C-A | *** | ||||||
22223993-T-G | 20062107-T-G | DYZ19 | *** | |||||
22226425-A-C | 20064539-A-C | DYZ19 | *** | |||||
22226805-A-T | 20064919-A-T | DYZ19 | *** | |||||
22226808-G-A | 20064922-G-A | DYZ19 | *** | |||||
22226817-C-T | 20064931-C-T | DYZ19 | *** | |||||
22227981-G-C | 20066095-G-C | DYZ19 | *** | |||||
22227991-A-G | 20066105-A-G | DYZ19 | *** | |||||
22228000-A-G | 20066114-A-G | DYZ19 | *** | |||||
22228015-G-T | 20066129-G-T | DYZ19 | *** | |||||
22228016-A-T | 20066130-A-T | DYZ19 | *** | |||||
22231833-T-C | 20069947-T-C | DYZ19 | *** | |||||
22234569-T-A | 20072683-T-A | DYZ19 | *** | |||||
22234570-A-G | 20072684-A-G | DYZ19 | *** | |||||
22234661-C-G | 20072775-C-G | DYZ19 | *** | |||||
22234671-A-G | 20072785-A-G | DYZ19 | *** | |||||
22234675-T-A | 20072789-T-A | DYZ19 | *** | |||||
22234677-T-A | 20072791-T-A | DYZ19 | *** | |||||
22234690-T-A | 20072804-T-A | DYZ19 | *** | |||||
22234692-T-C | 20072806-T-C | DYZ19 | *** | |||||
22234785-T-A | 20072899-T-A | DYZ19 | *** | |||||
22249364-C-T | 20087478-C-T | DYZ19 | *** | |||||
22249376-C-T | 20087490-C-T | DYZ19 | *** | |||||
22266050-T-G | 20104164-T-G | DYZ19 | *** | |||||
22295919-C-G | 20134033-C-G | DYZ19 | *** | |||||
22297259-C-T | 20135373-C-T | DYZ19 | *** | |||||
22311236-G-T | 20149350-G-T | DYZ19 | *** | |||||
22311283-A-T | 20149397-A-T | DYZ19 | *** | |||||
22311284-G-A | 20149398-G-A | DYZ19 | *** | |||||
22341436-G-T | 20179550-G-T | DYZ19 | *** | |||||
22341549-C-A | 20179663-C-A | DYZ19 | *** | |||||
22341949-T-A | 20180063-T-A | DYZ19 | *** | |||||
22344636-G-C | 20182750-G-C | DYZ19 | *** | |||||
22356797-G-T | 20194911-G-T | DYZ19 | *** | |||||
22356835-A-C | 20194949-A-C | DYZ19 | *** | |||||
22357174-C-A | 20195288-C-A | DYZ19 | *** | |||||
22357658-G-A | 20195772-G-A | DYZ19 | *** | |||||
22359961-A-C | 20198075-A-C | DYZ19 | *** | |||||
22364455-A-C | 20202569-A-C | DYZ19 | *** | |||||
22364485-C-A | 20202599-C-A | DYZ19 | *** | |||||
22364831-G-T | 20202945-G-T | DYZ19 | *** | |||||
22366094-G-A | 20204208-G-A | DYZ19 | *** | |||||
22367351-G-T | 20205465-G-T | DYZ19 | *** | |||||
22450170-G-T | 20288284-G-T | DYZ19 | *** | |||||
22450410-A-T | 20288524-A-T | DYZ19 | *** | |||||
22453452-G-C | 20291566-G-C | DYZ19 | *** | |||||
22481231-G-A | 20319345-G-A | DYZ19 | *** | |||||
22495631-T-G | 20333745-T-G | DYZ19 | *** | |||||
22495643-C-G | 20333757-C-G | DYZ19 | *** | |||||
22502467-A-T | 20340581-A-T | DYZ19 | *** | |||||
22502676-T-C | 20340790-T-C | DYZ19 | *** | |||||
22503626-G-A | 20341740-G-A | DYZ19 | *** | |||||
22503684-T-C | 20341798-T-C | DYZ19 | *** | |||||
22620702-T-C | 20458816-T-C | *** | ||||||
22777583-T-A | 20615697-T-A | *** | ||||||
23038744-G-A | 20876858-G-A | *** | ||||||
23106506-A-T | 20944620-A-T | *** | ||||||
23332506-T-C | 21170620-T-C | *** | ||||||
23425299-A-T | 21263413-A-T | *** | ||||||
23569770-A-C | 21407884-A-C | *** | ||||||
24037332-G-T | 21891185-G-T | *** | ||||||
24094803-T-C | 21948656-T-C | P3_b1 | *** | |||||
24096533-G-T | 21950386-G-T | P3_b1 | *** | |||||
24113328-T-C | 21967181-T-C | P3_b1 | *** | |||||
24142893-A-G | 21996746-A-G | P3_b1 | *** | |||||
24208056-A-G | 22061909-A-G | P3_b1 | *** | |||||
24245046-G-T | 22098899-G-T | P3_b1 | *** | |||||
24264921-T-C | 22118774-T-C | P3_b1 | *** | |||||
24273680-G-T | 22127533-G-T | P3_b1 | *** | |||||
24274760-A-G | 22128613-A-G | P3_b1 | *** | |||||
24283190-C-A | 22137043-C-A | P3_t1 | *** | |||||
24572691-A-C | 22426544-A-C | P3_t2 | *** | |||||
24573789-C-G | 22427642-C-G | P3_t2 | *** | |||||
24620006-G-T | 22473859-G-T | P3_t2 | *** | |||||
24646626-G-T | 22500479-G-T | P3_b2 | *** | |||||
24663583-A-C | 22517436-A-C | P3_b2 | *** | |||||
24726369-T-G | 22580222-T-G | P3_b2 | *** | |||||
24906812-C-A | 22760665-C-A | g1 | *** | |||||
24908329-C-A | 22762182-C-A | g1 | *** | |||||
24910157-A-T | 22764010-A-T | g1 | *** | |||||
24960163-T-C | 22814016-T-C | g1 | *** | |||||
24997364-G-A | 22851217-G-A | g1 | *** | |||||
24998068-A-C | 22851921-A-C | g1 | *** | |||||
24998129-T-C | 22851982-T-C | g1 | *** | |||||
25147165-C-T | 23001018-C-T | g1 | *** | |||||
25207704-T-A | 23061557-T-A | P2_r1 | *** | |||||
25207814-C-A | 23061667-C-A | P2_r1 | *** | |||||
25241047-A-C | 23094900-A-C | P2_r1 | *** | |||||
25241550-G-C | 23095403-G-C | P2_r1 | *** | |||||
25246616-A-T | 23100469-A-T | P2_r1 | *** | |||||
25256541-C-T | 23110394-C-T | P2_r1 | *** | |||||
25273967-T-C | 23127820-T-C | P2_r1 | *** | |||||
25311658-C-T | 23165511-C-T | P2_r1 | *** | |||||
25351933-G-C | 23205786-G-C | P2_r1 | *** | |||||
25429300-G-T | 23283153-G-T | P2_r2 | *** | |||||
25505196-A-G | 23359049-A-G | P1_gr1 | *** | |||||
25577333-T-G | 23431186-T-G | P1_gr1 | *** | |||||
25609766-G-A | 23463619-G-A | P1_gr1 | *** | |||||
25628564-T-A | 23482417-T-A | P1_b3 | *** | |||||
25629726-C-T | 23483579-C-T | P1_b3 | *** | |||||
25633487-G-T | 23487340-G-T | P1_b3 | *** | |||||
25730963-C-A | 23584816-C-A | P1_b3 | *** | |||||
25736562-T-C | 23590415-T-C | P1_b3 | *** | |||||
25886181-C-A | 23740034-C-A | P1_Y1 | 12×A | *** | ||||
25939309-C-A | 23793162-C-A | P1_Y1 | *** | |||||
25990704-G-T | 23844557-G-T | P1_Y1 | *** | |||||
26047626-A-T | 23901479-A-T | P1_Y1 | *** | |||||
26060039-T-A | 23913892-T-A | P1_Y1 | *** | |||||
26101124-T-G | 23954977-T-G | P1_Y1 | *** | |||||
26127770-G-C | 23981623-G-C | P1_Y1 | *** | |||||
26171125-A-G | 24024978-A-G | P1_Y1 | *** | |||||
26171196-A-C | 24025049-A-C | P1_Y1 | *** | |||||
26207475-C-A | 24061328-C-A | P1_Y1 | *** | |||||
26207535-T-C | 24061388-T-C | P1_Y1 | *** | |||||
26263333-A-T | 24117186-A-T | P1_Y1 | *** | |||||
26299057-G-T | 24152910-G-T | P1_Y1 | *** | |||||
26310770-G-T | 24164623-G-T | P1_Y1 | *** | |||||
26310925-A-T | 24164778-A-T | P1_Y1 | *** | |||||
26343444-C-T | 24197297-C-T | P1_Y1 | *** | |||||
26547477-C-A | 24401330-C-A | P1_g2 | *** | |||||
26570661-C-A | 24424514-C-A | P1_g2 | *** | |||||
26613936-T-G | 24467789-T-G | P1_g2 | *** | |||||
26676689-G-T | 24530542-G-T | P1_g2 | *** | |||||
26713713-C-T | 24567566-C-T | P1_g2 | *** | |||||
26713715-C-T | 24567568-C-T | P1_g2 | *** | |||||
26777649-G-A | 24631502-G-A | P1_g2 | *** | |||||
26983829-T-G | 24837682-T-G | P1_r4 | *** | |||||
27077146-G-T | 24930999-G-T | P1_r4 | *** | |||||
27088211-C-A | 24942064-C-A | P1_r4 | *** | |||||
27088421-C-G | 24942274-C-G | P1_r4 | *** | |||||
27202402-G-T | 25056255-G-T | P1_g3 | *** | |||||
27228901-A-C | 25082754-A-C | P1_g3 | *** | |||||
27264181-C-T | 25118034-C-T | P1_g3 | *** | |||||
27286480-C-A | 25140333-C-A | P1_g3 | *** | |||||
27286655-C-T | 25140508-C-T | P1_g3 | *** | |||||
27288892-C-T | 25142745-C-T | P1_g3 | *** | |||||
27319753-G-T | 25173606-G-T | P1_g3 | *** | |||||
27327854-T-G | 25181707-T-G | P1_g3 | *** | |||||
27436411-T-G | 25290264-T-G | P1_Y2 | *** | |||||
27436421-C-A | 25290274-C-A | P1_Y2 | *** | |||||
27436498-C-A | 25290351-C-A | P1_Y2 | *** | |||||
27528986-C-A | 25382839-C-A | P1_Y2 | *** | |||||
27553583-C-A | 25407436-C-A | P1_Y2 | *** | |||||
27561251-C-A | 25415104-C-A | P1_Y2 | *** | |||||
27608505-G-T | 25462358-G-T | P1_Y2 | *** | |||||
27608905-T-A | 25462758-T-A | P1_Y2 | *** | |||||
27615985-T-C | 25469838-T-C | P1_Y2 | *** | |||||
27651778-C-A | 25505631-C-A | P1_Y2 | 27×A | *** | ||||
27733293-C-A | 25587146-C-A | P1_Y2 | *** | |||||
27733619-T-G | 25587472-T-G | P1_Y2 | *** | |||||
27733882-C-A | 25587735-C-A | P1_Y2 | *** | |||||
27860258-G-T | 25714111-G-T | P1_Y2 | *** | |||||
27861070-A-T | 25714923-A-T | P1_Y2 | *** | |||||
27915776-C-A | 25769629-C-A | P1_Y2 | *** | |||||
27971563-T-A | 25825416-T-A | P1_Y2 | *** | |||||
27991218-A-G | 25845071-A-G | P1_Y2 | *** | |||||
28007879-C-A | 25861732-C-A | P1_Y2 | *** | |||||
28020099-A-C | 25873952-A-C | P1_Y2 | *** | |||||
28090036-A-G | 25943889-A-G | P1_Y2 | *** | |||||
28096371-G-T | 25950224-G-T | P1_Y2 | *** | |||||
28117262-A-T | 25971115-A-T | P1_b4 | *** | |||||
28219578-G-T | 26073431-G-T | P1_b4 | *** | |||||
28228666-G-T | 26082519-G-T | P1_b4 | *** | |||||
28253346-G-A | 26107199-G-A | P1_b4 | *** | |||||
28411608-T-C | 26265461-T-C | P1_gr2 | *** | |||||
28486633-G-A | 26340486-G-A | *** | ||||||
28628430-A-T | 26482283-A-T | *** | ||||||
28749745-G-A | 26603598-G-A | *** | ||||||
58823036-C-A | 56767835-G-T | *** | ||||||
58828380-G-T | 56762491-C-A | *** | ||||||
58837958-A-G | 56752913-T-C | *** | ||||||
58838427-T-A | 56752444-A-T | *** | ||||||
58843321-A-G | 56747550-T-C | *** | ||||||
58845166-G-C | 56745705-C-G | *** | ||||||
58845197-T-C | 56745674-A-G | *** | ||||||
58847007-G-C | 56743864-C-G | *** | ||||||
58853276-G-T | 56737595-C-A | *** | ||||||
58867548-G-T | 56723323-C-A | *** | ||||||
58869517-A-T | 56721354-T-A | *** | ||||||
58882953-C-T | 56707918-G-A | *** | ||||||
58887697-A-T | 56703174-T-A | *** | ||||||
58888585-C-A | 56702286-G-T | *** | ||||||
58893602-T-C | 56697269-A-G | *** | ||||||
58905527-A-C | 56685344-T-G | *** | ||||||
58909577-T-A | 56681294-A-T | *** | ||||||
58914851-T-C | 56676020-A-G | *** | ||||||
3544895-G-GT | 3676854-G-GT | *** | ||||||
22297120-CCATCT-ACTTCA | 20135234-CCATCT-ACTTCA | DYZ19 | *** | |||||
13478076-TGCA-CGCG | 11322400-TGCA-CGCG | *** | ||||||
13485502-GT-AC | 11329826-GT-AC | *** | ||||||
5913745-T-TAGCATTATATTATAAGCACTTACACTGTTATTAAATAATTAAAAAAATAACTTTCAA | 6045704-T-TAGCATTATATTATAAGCACTTACACTGTTATTAAATAATTAAAAAAATAACTTTCAA | *** | ||||||
6489371-CAAAAAA-C | 6621330-CAAAAAA-C | 25×A | *** | |||||
7211280-CTGC-GTGG | 7343239-CTGC-GTGG | *** | ||||||
7211288-TG-CA | 7343247-TG-CA | *** | ||||||
13141810-A-ATTCCC | 10631296-A-ATTCCC | *** | ||||||
13199166-A-AAAAAACAAC | 11043490-A-AAAAAACAAC | *** | ||||||
13253199-GT-G | 11097523-GT-G | 14×T | *** | |||||
13453455-A-ATTCCC | 11297779-A-ATTCCC | *** | ||||||
13453460-A-ATTCCT | 11297784-A-ATTCCT | *** | ||||||
13453465-A-ATTCCC | 11297789-A-ATTCCC | *** | ||||||
13453470-A-ATTCCT | 11297794-A-ATTCCT | *** | ||||||
13453480-A-ATTCCT | 11297804-A-ATTCCT | *** | ||||||
13453840-C-CTCCAT | 11298164-C-CTCCAT | 10×TCCAT | *** | |||||
13459268-T-TGCCACTCCAC | 11303592-T-TGCCACTCCAC | *** | ||||||
13478040-CT-TC | 11322364-CT-TC | *** | ||||||
13487703-CGTC-AGTG | 11332027-CGTC-AGTG | *** | ||||||
13487724-AG-GC | 11332048-AG-GC | *** | ||||||
13487814-CAG-TTA | 11332138-CAG-TTA | *** | ||||||
13489680-CC-TT | 11334004-CC-TT | *** | ||||||
13661298-A-ATGGAT | 11505622-A-ATGGAT | DYZ17 | *** | |||||
14026947-A-ATCTATCTT | 11906241-A-ATCTATCTT | *** | ||||||
14083957-G-GATAGATAT | 11963251-G-GATAGATAT | *** | ||||||
14825837-TTTTTTG-T | 12713904-TTTTTTG-T | *** | ||||||
15047301-T-TG | 12935392-T-TG | *** | ||||||
15683627-TCAAA-T | 13571747-TCAAA-T | *** | ||||||
16344408-T-TTCCTCC | 14232528-T-TTCCTCC | *** | ||||||
16344419-C-CTTCTTT | 14232539-C-CTTCTTT | *** | ||||||
16809482-T-TAGAG | 14697602-T-TAGAG | *** | ||||||
17060092-CT-C | 14948212-CT-C | *** | ||||||
17196756-A-AAAGG | 15084876-A-AAAGG | *** | ||||||
17459484-GCAA-G | 15347604-GCAA-G | *** | ||||||
17662010-ATGTGTGTG-A | 15550130-ATGTGTGTG-A | 21×TG | *** | |||||
20842516-GGGAAAGAA-G | 18680630-GGGAAAGAA-G | P4_Dst | *** | |||||
21386194-A-ATATT | 19224308-A-ATATT | *** | ||||||
21464193-A-AAAGG | 19302307-A-AAAGG | *** | ||||||
22085145-CTCAG-TTCAC | 19923259-CTCAG-TTCAC | *** | ||||||
22226486-CC-A | 20064600-CC-A | DYZ19 | *** | |||||
22227979-CTG-TTC | 20066093-CTG-TTC | DYZ19 | *** | |||||
22228015-GA-TT | 20066129-GA-TT | DYZ19 | *** | |||||
22229540-TGAAGGAAT-AGATAGAAC | 20067654-TGAAGGAAT-AGATAGAAC | DYZ19 | *** | |||||
22266050-TGTTG-GGTTA | 20104164-TGTTG-GGTTA | DYZ19 | *** | |||||
22309825-AGTC-TGTG | 20147939-AGTC-TGTG | DYZ19 | *** | |||||
22311283-AGT-TAC | 20149397-AGT-TAC | DYZ19 | *** | |||||
22341971-AGATC-TCTTA | 20180085-AGATC-TCTTA | DYZ19 | *** | |||||
22344635-GG-C | 20182749-GG-C | DYZ19 | *** | |||||
22356758-TGG-GGT | 20194872-TGG-GGT | DYZ19 | *** | |||||
22366093-TG-AA | 20204207-TG-AA | DYZ19 | *** | |||||
22502170-CG-TT | 20340284-CG-TT | DYZ19 | *** | |||||
22502297-T-TA | 20340411-T-TA | DYZ19 | *** | |||||
23293594-GTGTGTATA-G | 21131708-GTGTGTATA-G | *** | ||||||
23438974-GCCT-CCCC | 21277088-GCCT-CCCC | *** | ||||||
24107663-CAAAAAAAAA-C | 21961516-CAAAAAAAAA-C | P3_b1 | 18×A | *** | ||||
24646623-GTTG-TTTT | 22500476-GTTG-TTTT | P3_b2 | *** | |||||
24710109-T-TATC | 22563962-T-TATC | P3_b2 | *** | |||||
25201091-A-AAGG | 23054944-A-AAGG | g1 | 15×AAGG | *** | ||||
25802525-TA-T | 23656378-TA-T | P1_b3 | *** | |||||
26563185-TACACAC-T | 24417038-TACACAC-T | P1_g2 | 15×AC | *** | ||||
26834784-GAA-G | 24688637-GAA-G | P1_g2 | *** | |||||
58908796-AGTCC-GGTAA | 56682071-GGACT-TTACC | *** | ||||||
58975128-ATCCAT-A | 56828981-ATCCAT-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.