Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > DF90 > FGC14641 > S18462

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
18262721-C-A 16150841-C-A FGC42942 +
17979404-C-A 15867524-C-A FGC42941 Y+
15085740-A-T 12973830-A-T FGC42931 YY+
15318135-C-T 13206241-C-T FGC42932 YY+
15907219-T-C 13795339-T-C FGC42933 YY+
16280158-G-A 14168278-G-A FGC42935 YY+
16329995-G-A 14218115-G-A FGC42936 YY+
16333914-G-T 14222034-G-T FGC42937 YY+
16712770-T-C 14600890-T-C FGC42938 YY+
17054896-T-C 14943016-T-C BY14635 BZ2890 YY+
17342262-G-C 15230382-G-C FGC42940 YY+
18640557-G-T 16528677-G-T FGC42943 YY+
14298284-A-T 12177578-A-T FGC42927 YY+
19254678-C-T 17142798-C-T FGC42944 YY+
19256396-G-T 17144516-G-T FGC42945 YY+
23988983-T-C 21842836-T-C FGC42954 Y+
23974010-G-A 21827863-G-A FGC42953 Y+
22833590-C-T 20671704-C-T FGC42952 YY+
21290865-A-T 19128979-A-T FGC42946 YY+
21615744-G-A 19453858-G-A FGC42948 YY+
22030921-G-A 19869035-G-A FGC42949 YY+
22213747-G-A 20051861-G-A FGC42950 Y+
14401283-G-A 12280580-G-A FGC42929 YY+
14443887-T-C 12323160-T-C FGC42930 Y+
14202575-C-T 12081869-C-T FGC42926 YY+
8170502-C-T 8302461-C-T FGC42923 YY+
6923663-AAG-A 7055622-AAG-A +
9522037-CCTAT-C 9684428-CCTAT-C FGC45484 +
2710308-G-T 2842267-G-T L697 YY9×T+
6349964-C-T 6481923-C-T FGC78972 +
7725973-G-A 7857932-G-A FGC42921 YY+
22475367-T-C 20313481-T-C FGC42951 DYZ19 +
13605382-A-G 11449706-A-G FGC78975 +
9394879-C-G 9557270-C-G Y3193 FGC10865 YY+
8467103-G-A 8599062-G-A SK1765 YY+
16134200-G-A 14022320-G-A FGC42934 **
17567396-C-T 15455516-C-T CTS7622 M2227 **
3012709-CTT-C 3144668-CTT-C **
13740024-G-T 11584348-G-T **
18527820-A-G 16415940-A-G FGC78978 P6_Dst **
28551424-G-T 26405277-G-T **
23848635-C-A 21686749-C-A PF7109 **
22476541-AC-A 20314655-AC-A DYZ19 ***
24156596-GT-G 22010449-GT-G P3_b1 8×T***
25982989-G-A 23836842-G-A P1_Y1 ***
25560422-G-A 23414275-G-A P1_gr1 ***
25350490-G-A 23204343-G-A P2_r1 ***
22449366-G-C 20287480-G-C DYZ19 ***
24155836-T-A 22009689-T-A P3_b1 ***
25311371-A-C 23165224-A-C P2_r1 ***
25017505-T-A 22871358-T-A g1 ***
24332367-G-A 22186220-G-A P3_t1 ***
25015087-A-C 22868940-A-C g1 ***
24831059-C-T 22684912-C-T P3_b2 ***
24162251-A-G 22016104-A-G P3_b1 ***
27232207-A-C 25086060-A-C BY44251 P1_g3 ***
22340673-G-C 20178787-G-C DYZ19 ***
6292071-C-A 6424030-C-A IR3_Dst ***
13140124-CG-T 10629610-CG-T ***
13599449-A-T 11443773-A-T ***
13599460-T-A 11443784-T-A ***
25072260-A-AT 22926113-A-AT g1 16×T***
13711136-A-C 11555460-A-C FT449357 ***
24125026-G-A 21978879-G-A P3_b1 ***
22279462-C-T 20117576-C-T DYZ19 ***
6376941-T-A 6508900-T-A FGC78973 ***
22261927-G-T 20100041-G-T DYZ19 ***
13572682-G-A 11417006-G-A FGC42924 ***
22449372-T-A,G 20287486-T-A,G DYZ19 ***
19878148-C-T 17766268-C-T P5_Prx ***
20040405-A-C 17928525-A-C P5_Prx ***
20040442-A-G 17928562-A-G P5_Prx ***
20630978-G-T 18469092-G-T P4_Prx ***
20681417-G-A 18519531-G-A P4_Prx ***
22225912-T-C 20064026-T-C DYZ19 ***
22229877-C-G 20067991-C-G DYZ19 ***
24310306-C-CAT 22164159-C-CAT P3_t1 8×AT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 4212271079126478224607902662
Used in age calculations1079126478224607902662
Counts of SNPs2726
Variant counts last updated 2022-09-21 04:19:16.

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