Logan
FTDNA: 424425, BigY2: 424425Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 424425 | BigY2 424425 |
---|---|---|---|---|---|---|---|---|---|
13452571-C-CACTCT | 11296895-C-CACTCT | A* | |||||||
20631409-G-C | 18469523-G-C | P4_Prx | A* | ||||||
17940788-CAAAT-C | 15828908-CAAAT-C | 7×AAAT | + | ** | |||||
4244723-T-G | 4376682-T-G | BY58065 | ** | + | |||||
13452628-G-A | 11296952-G-A | *** | * | ||||||
20084461-T-TTTC | 17972581-T-TTTC | P5_Dst | ** | ||||||
22423962-A-G | 20262076-A-G | FGC27659 | DYZ19 | ** | |||||
25524693-C-CT | 23378546-C-CT | P1_gr1 | 33×T | ** | |||||
13681636-ATCGAATGAAATGGAC-A | 11525960-ATCGAATGAAATGGAC-A | *** | ** | ||||||
4236304-A-AAT | 4368263-A-AAT | 9×AT | ** | ||||||
13478229-T-A | 11322553-T-A | ** | |||||||
13262831-G-A | 11107155-G-A | ** | |||||||
13330312-T-TTA | 11174636-T-TTA | ** | |||||||
3375576-C-A | 3507535-C-A | ** | |||||||
7134023-C-A | 7265982-C-A | ** | |||||||
6375633-TA-T | 6507592-TA-T | 9×A | ** | ||||||
15334853-C-A | 13222971-C-A | ** | ** | ||||||
14297931-A-T | 12177225-A-T | ** | |||||||
27585953-C-T | 25439806-C-T | P1_Y2 | ** | ||||||
13488832-A-T | 11333156-A-T | ** | |||||||
26514931-TCA-T | 24368784-TCA-T | P1_Y1 | 9×CA | ** | |||||
23285419-A-AT | 21123533-A-AT | 10×T | ** | ||||||
23066845-C-A | 20904959-C-A | ** | |||||||
19263496-GAAA-G | 17151616-GAAA-G | 14×A | ** | ||||||
19189473-A-G | 17077593-A-G | ** | |||||||
4133359-C-A | 4265318-C-A | FGC29307 | ** | ||||||
19868147-T-TC | 17756267-T-TC | P5_Prx | ** | ||||||
10677745-CTCCAA-C | ** | ||||||||
18189500-C-A | 16077620-C-A | ** | |||||||
19052346-T-A | 16940466-T-A | ** | |||||||
13576109-C-T | 11420433-C-T | ** | |||||||
2986075-C-A | 3118034-C-A | ** | |||||||
8710009-C-A | 8841968-C-A | ** | |||||||
21895579-C-A | 19733693-C-A | ** | |||||||
10925469-C-A | ** | ||||||||
10892036-C-A | ** | ||||||||
21464518-C-A | 19302632-C-A | ** | |||||||
11028213-T-A | ** | ||||||||
11028215-CACTGA-C | ** | ||||||||
9461860-C-A | 9624251-C-A | ** | |||||||
13576122-C-T | 11420446-C-T | 14×T | ** | ||||||
5443289-C-A | 5575248-C-A | ** | |||||||
7861447-C-A | 7993406-C-A | ** | |||||||
56842249-G-A | ** | ||||||||
56842257-T-A | ** | ||||||||
56842260-A-G | ** | ||||||||
15870575-C-A | 13758695-C-A | ** | |||||||
10768643-A-T | ** | ||||||||
14473683-C-A | 12352952-C-A | ** | |||||||
14188110-C-A | 12067404-C-A | ** | |||||||
2909260-G-A | 3041219-G-A | ** | |||||||
13576115-C-T | 11420439-C-T | ** | |||||||
10882027-G-T | ** | ||||||||
7996775-C-A | 8128734-C-A | ** | |||||||
8854168-C-A | 8986127-C-A | ** | |||||||
24910906-A-AT | 22764759-A-AT | g1 | ** | ||||||
27982170-AT-A | 25836023-AT-A | P1_Y2 | ** | ||||||
15882071-TC-T | 13770191-TC-T | ** | |||||||
11650389-A-G | ** | ||||||||
4388507-C-A | 4520466-C-A | ** | |||||||
7723948-CTTTTTT-C | 7855907-CTTTTTT-C | 25×T | ** | ||||||
11646272-G-C | ** | ||||||||
10985174-C-T | ** | ||||||||
10985184-CATTCT-C | ** | ||||||||
9753976-T-TTC | 9916367-T-TTC | ** | |||||||
14635674-C-A | 12523743-C-A | ** | |||||||
11025561-T-A | ** | ||||||||
10973250-C-CT | ** | ||||||||
10973259-C-T | ** | ||||||||
5185455-C-A | 5317414-C-A | ** | |||||||
13856352-G-T | 11735646-G-T | ** | |||||||
17187430-C-A | 15075550-C-A | ** | |||||||
24124360-C-A | 21978213-C-A | P3_b1 | ** | ||||||
28812538-G-GAATGGAGTTC | 26666391-G-GAATGGAGTTC | ** | |||||||
28812607-A-G | 26666460-A-G | ** | |||||||
28812615-T-G | 26666468-T-G | ** | |||||||
10756884-C-A | FT429844 | ** | |||||||
10825666-C-T | ** | ||||||||
21297855-C-A | 19135969-C-A | ** | |||||||
14029162-C-A | 11908456-C-A | ** | |||||||
13488816-G-T | 11333140-G-T | ** | |||||||
10882102-C-T | ** | ||||||||
18384349-C-A | 16272469-C-A | P6_Gap | ** | ||||||
15346944-C-A | 13235063-C-A | ** | |||||||
13306247-C-A | 11150571-C-A | ** | |||||||
2915172-C-A | 3047131-C-A | ** | |||||||
10654258-T-C | ** | ||||||||
28798068-G-T | 26651921-G-T | ** | |||||||
56842238-C-A | ** | ||||||||
10824134-CTCCATTCCATTCCAT-C | ** | ||||||||
10780595-A-G | ** | ||||||||
10060688-C-A | 10223079-C-A | ** | |||||||
16475192-C-A | 14363312-C-A | ** | |||||||
7309147-C-A | 7441106-C-A | ** | |||||||
10828810-G-GCTCA | ** | ||||||||
10828814-ACATT-A | ** | ||||||||
10828834-A-C | ** | ||||||||
10828842-C-T | ** | ||||||||
28480902-C-A | 26334755-C-A | ** | |||||||
10876760-C-T | ** | ||||||||
21910158-C-A | 19748272-C-A | ** | |||||||
20825736-C-A | 18663850-C-A | P4_Gap | ** | ||||||
10677558-A-C | ** | ||||||||
7200487-C-A | 7332446-C-A | ** | |||||||
13483793-C-A | 11328117-C-A | ** | |||||||
15260732-C-A | 13148816-C-A | ** | |||||||
56858780-G-T | ** | ||||||||
7138946-C-A | 7270905-C-A | ** | |||||||
5626031-C-A | 5757990-C-A | ** | |||||||
15364046-C-G | 13252166-C-G | ** | |||||||
9730622-C-A | 9893013-C-A | IR3_Prx | ** | ||||||
18040432-G-A | 15928552-G-A | A16917 | ** | ||||||
10986401-C-T | ** | ||||||||
10986405-A-C | ** | ||||||||
21334568-C-A | 19172682-C-A | ** | |||||||
11028112-C-T | ** | ||||||||
16598980-TCAA-T | 14487100-TCAA-T | ** | |||||||
2975533-C-A | 3107492-C-A | ** | |||||||
3546016-C-A | 3677975-C-A | ** | |||||||
15011821-C-A | 12899909-C-A | ** | |||||||
6856801-C-A | 6988760-C-A | ** | |||||||
11646221-C-T | ** | ||||||||
6767784-GA-G | 6899743-GA-G | 9×A | ** | ||||||
10893996-C-T | Z16280 | ** | |||||||
10882067-C-T | ** | ||||||||
10973261-AG-A | ** | ||||||||
10997724-C-G | ** | ||||||||
10652157-C-A | ** | ||||||||
10899040-C-G | ** | ||||||||
16179623-A-T | 14067743-A-T | ** | |||||||
11036012-C-T | ** | ||||||||
2665385-C-A | 2797344-C-A | ** | |||||||
2803652-C-A | 2935611-C-A | ** | |||||||
16020848-C-A | 13908968-C-A | ** | |||||||
19775335-GA-G | 17663455-GA-G | P5_Prx | ** | ||||||
13224628-C-A | 11068952-C-A | FT441241 | ** | ||||||
4240424-C-A | 4372383-C-A | ** | |||||||
5022037-A-AAT | 5153996-A-AAT | ** | |||||||
6415511-C-A | 6547470-C-A | ** | |||||||
11001842-C-A | ** | ||||||||
3078527-C-A | 3210486-C-A | ** | |||||||
16048201-C-A | 13936321-C-A | ** | |||||||
5170512-C-A | 5302471-C-A | ** | |||||||
26415881-G-T | 24269734-G-T | P1_Y1 | ** | ||||||
5267526-A-T | 5399485-A-T | ** | |||||||
10925484-C-A | ** | ||||||||
14721782-C-A | 12609850-C-A | ** | |||||||
28532100-GA-G | 26385953-GA-G | ** | |||||||
2760025-A-T | 2891984-A-T | ** | |||||||
2810433-CTA-C | 2942392-CTA-C | ** | |||||||
2814864-A-T | 2946823-A-T | ** | |||||||
2960437-C-A | 3092396-C-A | ** | |||||||
3107537-C-A | 3239496-C-A | ** | |||||||
3116109-C-A | 3248068-C-A | ** | |||||||
3266224-T-C | 3398183-T-C | ** | |||||||
3266834-A-G | 3398793-A-G | ** | |||||||
3272734-T-A | 3404693-T-A | ** | |||||||
3285382-C-A | 3417341-C-A | ** | |||||||
3332792-A-G | 3464751-A-G | ** | |||||||
3491178-C-A | 3623137-C-A | ** | |||||||
3597634-A-G | 3729593-A-G | ** | |||||||
3616225-C-A | 3748184-C-A | ** | |||||||
3679034-A-T | 3810993-A-T | ** | |||||||
3679942-G-T | 3811901-G-T | ** | |||||||
3704426-T-C | 3836385-T-C | ** | |||||||
3732698-G-T | 3864657-G-T | ** | |||||||
3770075-G-T | 3902034-G-T | ** | |||||||
3832563-T-TA | 3964522-T-TA | 10×A | ** | ||||||
3849200-C-T | 3981159-C-T | ** | |||||||
3867551-A-T | 3999510-A-T | ** | |||||||
3978152-G-T | 4110111-G-T | ** | |||||||
3996645-C-A | 4128604-C-A | ** | |||||||
4076057-G-T | 4208016-G-T | ** | |||||||
4108319-C-A | 4240278-C-A | ** | |||||||
4166994-G-T | 4298953-G-T | ** | |||||||
4179251-A-T | 4311210-A-T | ** | |||||||
4201698-A-G | 4333657-A-G | ** | |||||||
4308297-C-A | 4440256-C-A | ** | |||||||
4379661-C-A | 4511620-C-A | ** | |||||||
4497229-C-T | 4629188-C-T | ** | |||||||
4553168-G-A | 4685127-G-A | ** | |||||||
4565695-G-T | 4697654-G-T | ** | |||||||
4626784-A-C | 4758743-A-C | ** | |||||||
4634093-G-T | 4766052-G-T | ** | |||||||
4672251-C-A | 4804210-C-A | ** | |||||||
4688097-C-A | 4820056-C-A | ** | |||||||
4713351-G-T | 4845310-G-T | ** | |||||||
4716018-C-A | 4847977-C-A | ** | |||||||
4757062-T-C | 4889021-T-C | ** | |||||||
4802668-T-C | 4934627-T-C | ** | |||||||
4802817-G-T | 4934776-G-T | ** | |||||||
4840135-C-A | 4972094-C-A | ** | |||||||
4898597-G-T | 5030556-G-T | ** | |||||||
4930563-C-A | 5062522-C-A | ** | |||||||
4969217-C-T | 5101176-C-T | ** | |||||||
4988633-G-T | 5120592-G-T | ** | |||||||
5005774-A-G | 5137733-A-G | ** | |||||||
5011009-T-G | 5142968-T-G | ** | |||||||
5011030-A-G | 5142989-A-G | ** | |||||||
5062964-T-C | 5194923-T-C | ** | |||||||
5108390-C-A | 5240349-C-A | ** | |||||||
5164280-C-T | 5296239-C-T | ** | |||||||
5180938-A-G | 5312897-A-G | ** | |||||||
5180942-G-T | 5312901-G-T | ** | |||||||
5235432-TTTTTG-T | 5367391-TTTTTG-T | ** | |||||||
5242632-C-A | 5374591-C-A | ** | |||||||
5261876-G-T | 5393835-G-T | ** | |||||||
5311767-C-A | 5443726-C-A | ** | |||||||
5313565-C-A | 5445524-C-A | ** | |||||||
5318232-C-A | 5450191-C-A | ** | |||||||
5325894-G-T | 5457853-G-T | ** | |||||||
5393432-A-G | 5525391-A-G | ** | |||||||
5495219-A-G | 5627178-A-G | ** | |||||||
5526325-G-T | 5658284-G-T | ** | |||||||
5551164-G-T | 5683123-G-T | ** | |||||||
5562869-G-T | 5694828-G-T | ** | |||||||
5570173-G-T | 5702132-G-T | ** | |||||||
5625965-C-G | 5757924-C-G | ** | |||||||
5650776-C-T | 5782735-C-T | ** | |||||||
5730466-C-A | 5862425-C-A | ** | |||||||
5782969-G-T | 5914928-G-T | ** | |||||||
5851286-A-G | 5983245-A-G | ** | |||||||
5911359-T-C | 6043318-T-C | ** | |||||||
5957277-G-T | 6089236-G-T | ** | |||||||
5957302-A-G | 6089261-A-G | ** | |||||||
5957334-G-A | 6089293-G-A | ** | |||||||
5963300-C-A | 6095259-C-A | ** | |||||||
5982118-G-T | 6114077-G-T | ** | |||||||
5996473-C-A | 6128432-C-A | ** | |||||||
6009947-G-T | 6141906-G-T | ** | |||||||
6205703-A-G | 6337662-A-G | IR3_Dst | ** | ||||||
6205712-A-G | 6337671-A-G | IR3_Dst | ** | ||||||
6282149-G-T | 6414108-G-T | IR3_Dst | ** | ||||||
6305932-A-C | 6437891-A-C | IR3_Dst | ** | ||||||
6392724-T-C | 6524683-T-C | ** | |||||||
6486314-A-T | 6618273-A-T | ** | |||||||
6514147-G-A | 6646106-G-A | ** | |||||||
6699073-C-A | 6831032-C-A | ** | |||||||
6728911-A-C | 6860870-A-C | ** | |||||||
6751455-A-G | 6883414-A-G | ** | |||||||
6826937-C-A | 6958896-C-A | ** | |||||||
6862052-A-G | 6994011-A-G | ** | |||||||
6903538-G-A | 7035497-G-A | ** | |||||||
6917672-C-A | 7049631-C-A | ** | |||||||
6922661-C-A | 7054620-C-A | ** | |||||||
6925074-A-G | 7057033-A-G | ** | |||||||
6957770-G-A | 7089729-G-A | ** | |||||||
6996800-C-G | 7128759-C-G | ** | |||||||
7086827-C-A | 7218786-C-A | ** | |||||||
7100750-A-G | 7232709-A-G | ** | |||||||
7109408-A-G | 7241367-A-G | ** | |||||||
7139230-A-G | 7271189-A-G | ** | |||||||
7145033-T-C | 7276992-T-C | ** | |||||||
7167154-C-A | 7299113-C-A | ** | |||||||
7214451-C-A | 7346410-C-A | ** | |||||||
7222106-A-C | 7354065-A-C | ** | |||||||
7223377-T-G | 7355336-T-G | ** | |||||||
7238221-C-A | 7370180-C-A | ** | |||||||
7252325-T-C | 7384284-T-C | ** | |||||||
7252372-C-A | 7384331-C-A | ** | |||||||
7302413-C-T | 7434372-C-T | ** | |||||||
7302438-T-A | 7434397-T-A | ** | |||||||
7332814-C-A | 7464773-C-A | ** | |||||||
7337075-C-G | 7469034-C-G | ** | |||||||
7340280-C-A | 7472239-C-A | ** | |||||||
7380770-A-G | 7512729-A-G | ** | |||||||
7380794-T-G | 7512753-T-G | ** | |||||||
7433512-C-A | 7565471-C-A | ** | |||||||
7705488-A-G | 7837447-A-G | ** | |||||||
7984640-T-C | 8116599-T-C | ** | |||||||
8171864-C-A | 8303823-C-A | ** | |||||||
8279941-C-A | 8411900-C-A | ** | |||||||
8291037-G-A | 8422996-G-A | ** | |||||||
8369601-C-A | 8501560-C-A | ** | |||||||
8720555-C-A | 8852514-C-A | ** | |||||||
8807662-G-A | 8939621-G-A | ** | |||||||
8849728-A-T | 8981687-A-T | ** | |||||||
8849748-T-C | 8981707-T-C | ** | |||||||
9056815-C-A | ** | ||||||||
9107974-G-T | ** | ||||||||
9121640-C-A | FT116034 | ** | |||||||
9077271-G-T | 9239662-G-T | ** | |||||||
9414553-T-C | 9576944-T-C | ** | |||||||
9465237-C-A | 9627628-C-A | ** | |||||||
9511421-G-T | 9673812-G-T | ** | |||||||
9745884-G-T | 9908275-G-T | ** | |||||||
9805196-G-T | 9967587-G-T | ** | |||||||
9826030-C-A | 9988421-C-A | ** | |||||||
9925264-T-G | 10087655-T-G | ** | |||||||
9939048-G-A | 10101439-G-A | ** | |||||||
10010530-G-C | 10172921-G-C | ** | |||||||
10056972-T-G | 10219363-T-G | ** | |||||||
10056988-C-A | 10219379-C-A | ** | |||||||
10651950-G-T | ** | ||||||||
10652849-C-A | ** | ||||||||
10666328-T-A | ** | ||||||||
10672173-C-G | ** | ||||||||
10677565-C-G | ** | ||||||||
10685005-TC-T | ** | ||||||||
10782016-G-T | ** | ||||||||
10810657-A-ATTCCG | ** | ||||||||
10825657-C-G | ** | ||||||||
10826348-T-C | ** | ||||||||
10826355-A-C | ** | ||||||||
10826361-T-C | ** | ||||||||
10826364-C-T | ** | ||||||||
10826367-G-A | ** | ||||||||
10828857-C-A | ** | ||||||||
10828858-C-T | ** | ||||||||
10828869-A-C | ** | ||||||||
10839649-C-T | ** | ||||||||
10840401-C-A | ** | ||||||||
10852180-GA-G | ** | ||||||||
10860633-C-A | ** | ||||||||
10868486-C-A | BY3300 | FT219097 | ** | ||||||
10868942-C-A | ** | ||||||||
10874138-C-A | ** | ||||||||
10874171-C-G | ** | ||||||||
10874205-C-G | ** | ||||||||
10882034-C-A | ** | ||||||||
10882069-C-CAACTG | ** | ||||||||
10882079-C-G | ** | ||||||||
10882105-C-G | ** | ||||||||
10885603-C-A | ** | ||||||||
10887435-C-A | ** | ||||||||
10888586-G-T | ** | ||||||||
10899054-C-A | ** | ||||||||
10899068-T-G | ** | ||||||||
10899084-C-A | ** | ||||||||
10900002-A-G | ** | ||||||||
10900764-C-A | ** | ||||||||
10918133-G-T | ** | ||||||||
10932532-C-A | ** | ||||||||
10935072-A-G | ** | ||||||||
10936308-A-G | ** | ||||||||
10939952-C-G | ** | ||||||||
10940072-C-A | ** | ||||||||
10941284-G-T | ** | ||||||||
10964562-C-A | ** | ||||||||
10964827-C-A | ** | ||||||||
10971811-T-C | ** | ||||||||
10980057-TTCCAC-T | ** | ||||||||
10982961-C-T | ** | ||||||||
10992261-C-CAATCT | ** | ||||||||
10995642-C-A | ** | ||||||||
10996973-C-A | ** | ||||||||
10998641-C-A | ** | ||||||||
10999469-C-T | ** | ||||||||
11004328-T-C | ** | ||||||||
11017730-GCATTC-G | ** | ||||||||
11027178-C-T | ** | ||||||||
11028121-G-A | FT440119 | ** | |||||||
11030106-C-A | ** | ||||||||
11030125-A-T | ** | ||||||||
11030137-T-A | ** | ||||||||
11030146-C-CTCCAA | ** | ||||||||
13196029-A-G | 11040353-A-G | ** | |||||||
13198729-T-A | 11043053-T-A | ** | |||||||
13226533-G-A | 11070857-G-A | ** | |||||||
13317859-T-C | 11162183-T-C | ** | |||||||
13410486-C-A | 11254810-C-A | ** | |||||||
13462273-C-A | 11306597-C-A | ** | |||||||
13462325-C-A | 11306649-C-A | ** | |||||||
13476284-C-A | 11320608-C-A | ** | |||||||
13488758-TC-T | 11333082-TC-T | ** | |||||||
13488765-C-AG | 11333089-C-AG | ** | |||||||
13488776-C-G | 11333100-C-G | ** | |||||||
13488973-T-G | 11333297-T-G | ** | |||||||
13490992-C-A | 11335316-C-A | ** | |||||||
13495754-G-A | 11340078-G-A | FT444331 | ** | ||||||
13507762-C-T | 11352086-C-T | ** | |||||||
13526539-C-A | 11370863-C-A | ** | |||||||
13584289-G-T | 11428613-G-T | ** | |||||||
13587770-C-A | 11432094-C-A | ** | |||||||
13601092-A-C | 11445416-A-C | ** | |||||||
13614747-T-A | 11459071-T-A | ** | |||||||
13625010-C-A | 11469334-C-A | ** | |||||||
13631276-C-A | 11475600-C-A | ** | |||||||
11646229-A-T | ** | ||||||||
11646234-A-T | ** | ||||||||
11646262-G-A | ** | ||||||||
11650487-G-A | ** | ||||||||
11656708-C-A | ** | ||||||||
11669864-G-C | ** | ||||||||
11671363-A-G | ** | ||||||||
11671421-G-T | ** | ||||||||
13855371-G-T | 11734665-G-T | ** | |||||||
13883083-T-G | 11762377-T-G | ** | |||||||
13883088-T-G | 11762382-T-G | ** | |||||||
13885452-T-A | 11764746-T-A | ** | |||||||
13936971-C-T | 11816265-C-T | ** | |||||||
13946877-C-T | 11826171-C-T | ** | |||||||
13999135-C-A | 11878429-C-A | ** | |||||||
14006647-C-A | 11885941-C-A | ** | |||||||
14013233-A-G | 11892527-A-G | ** | |||||||
14067285-C-A | 11946579-C-A | FT207101 | ** | ||||||
14069213-C-A | 11948507-C-A | FT263957 | ** | ||||||
14089771-C-A | 11969065-C-A | ** | |||||||
14106924-C-A | 11986218-C-A | ** | |||||||
14162880-G-T | 12042174-G-T | ** | |||||||
14163356-C-A | 12042650-C-A | ** | |||||||
14176164-C-A | 12055458-C-A | ** | |||||||
14218755-C-A | 12098049-C-A | ** | |||||||
14279227-G-T | 12158521-G-T | ** | |||||||
14284597-C-A | 12163891-C-A | ** | |||||||
14325017-C-A | 12204311-C-A | ** | |||||||
14351106-G-A | 12230401-G-A | ** | |||||||
14376121-T-C | 12255417-T-C | ** | |||||||
14376242-A-G | 12255538-A-G | ** | |||||||
14382803-G-A | 12262099-G-A | ** | |||||||
14395660-T-C | 12274956-T-C | ** | |||||||
14483521-C-A | 12362790-C-A | ** | |||||||
14515147-C-A | 12403352-C-A | ** | |||||||
14540622-G-T | 12428823-G-T | ** | |||||||
14544111-C-A | 12432312-C-A | FT374699 | ** | ||||||
14546601-C-A | 12434802-C-A | ** | |||||||
14550672-G-T | 12438873-G-T | ** | |||||||
14559178-C-A | 12447379-C-A | ** | |||||||
14564273-G-T | 12452473-G-T | ** | |||||||
14589253-T-G | 12477453-T-G | ** | |||||||
14627212-G-T | 12515280-G-T | ** | |||||||
14675967-G-T | 12564033-G-T | ** | |||||||
14740593-G-A | 12628661-G-A | ** | |||||||
14788979-C-A | 12677050-C-A | ** | |||||||
14802732-A-T | 12690803-A-T | ** | |||||||
14931823-C-G | 12819888-C-G | ** | |||||||
15034972-C-A | 12923060-C-A | ** | |||||||
15035000-C-A | 12923088-C-A | ** | |||||||
15147573-G-T | 13035660-G-T | ** | |||||||
15185368-A-G | 13073454-A-G | ** | |||||||
15202194-T-A | 13090280-T-A | ** | |||||||
15238953-C-A | 13127039-C-A | ** | |||||||
15280617-C-A | 13168716-C-A | ** | |||||||
15379073-A-G | 13267193-A-G | ** | |||||||
15546167-C-A | 13434287-C-A | ** | |||||||
15558034-C-A | 13446154-C-A | ** | |||||||
15619036-T-G | 13507156-T-G | ** | |||||||
15655195-G-T | 13543315-G-T | ** | |||||||
15682848-C-A | 13570968-C-A | ** | |||||||
15699852-C-A | 13587972-C-A | ** | |||||||
15743859-C-T | 13631979-C-T | ** | |||||||
15760814-G-C | 13648934-G-C | ** | |||||||
15792957-C-A | 13681077-C-A | ** | |||||||
15860200-C-G | 13748320-C-G | ** | |||||||
15928614-G-C | 13816734-G-C | ** | |||||||
15928625-A-T | 13816745-A-T | ** | |||||||
15986732-C-A | 13874852-C-A | ** | |||||||
16003474-C-T | 13891594-C-T | ** | |||||||
16012251-G-T | 13900371-G-T | ** | |||||||
16012293-G-T | 13900413-G-T | ** | |||||||
16044477-C-A | 13932597-C-A | ** | |||||||
16053460-C-A | 13941580-C-A | ** | |||||||
16079339-A-G | 13967459-A-G | ** | |||||||
16085572-A-G | 13973692-A-G | ** | |||||||
16181282-C-A | 14069402-C-A | ** | |||||||
16240862-C-A | 14128982-C-A | ** | |||||||
16316815-A-T | 14204935-A-T | ** | |||||||
16321552-TCTGAATA-T | 14209672-TCTGAATA-T | ** | |||||||
16394290-A-T | 14282410-A-T | ** | |||||||
16463535-T-A | 14351655-T-A | ** | |||||||
16504968-C-A | 14393088-C-A | ** | |||||||
16530944-C-A | 14419064-C-A | ** | |||||||
16555245-A-C | 14443365-A-C | ** | |||||||
16765566-A-G | 14653686-A-G | ** | |||||||
16828864-TTA-T | 14716984-TTA-T | ** | |||||||
16938594-C-A | 14826714-C-A | ** | |||||||
16943483-G-T | 14831603-G-T | ** | |||||||
16997995-T-A | 14886115-T-A | ** | |||||||
16999146-C-A | 14887266-C-A | ** | |||||||
17014286-C-A | 14902406-C-A | ** | |||||||
17088322-G-T | 14976442-G-T | ** | |||||||
17101736-G-T | 14989856-G-T | ** | |||||||
17143934-A-G | 15032054-A-G | ** | |||||||
17155904-TA-T | 15044024-TA-T | ** | |||||||
17212197-C-A | 15100317-C-A | ** | |||||||
17215963-G-T | 15104083-G-T | ** | |||||||
17470872-A-G | 15358992-A-G | ** | |||||||
17503068-C-A | 15391188-C-A | ** | |||||||
17505610-G-T | 15393730-G-T | ** | |||||||
17569108-C-A | 15457228-C-A | ** | |||||||
17575519-G-T | 15463639-G-T | ** | |||||||
17589235-C-A | 15477355-C-A | ** | |||||||
17625316-C-A | 15513436-C-A | ** | |||||||
17714831-A-G | 15602951-A-G | ** | |||||||
17724050-C-T | 15612170-C-T | ** | |||||||
17734596-A-T | 15622716-A-T | ** | |||||||
17840253-C-A | 15728373-C-A | ** | |||||||
17840321-C-A | 15728441-C-A | ** | |||||||
17922510-C-A | 15810630-C-A | ** | |||||||
18127891-C-A | 16016011-C-A | ** | |||||||
18130592-T-C | 16018712-T-C | ** | |||||||
18151784-T-A | 16039904-T-A | ** | |||||||
18184849-G-T | 16072969-G-T | ** | |||||||
18186398-G-T | 16074518-G-T | ** | |||||||
18197840-C-A | 16085960-C-A | ** | |||||||
18628132-C-T | 16516252-C-T | ** | |||||||
18817838-A-T | 16705958-A-T | ** | |||||||
18817929-A-G | 16706049-A-G | ** | |||||||
18853530-G-A | 16741650-G-A | ** | |||||||
18871822-G-T | 16759942-G-T | ** | |||||||
18997206-C-A | 16885326-C-A | ** | |||||||
19058063-G-A | 16946183-G-A | A9123 | ** | ||||||
19112623-G-T | 17000743-G-T | ** | |||||||
19130772-G-TTT | 17018892-G-TTT | ** | |||||||
19145627-A-T | 17033747-A-T | ** | |||||||
19231348-T-C | 17119468-T-C | ** | |||||||
19299383-C-A | 17187503-C-A | ** | |||||||
19312314-G-A | 17200434-G-A | ** | |||||||
19510298-TTA-T | 17398418-TTA-T | ** | |||||||
19531367-G-C | 17419487-G-C | ** | |||||||
19669152-C-A | 17557272-C-A | P5_Prx | ** | ||||||
19709607-G-T | 17597727-G-T | P5_Prx | ** | ||||||
20143534-T-C | 18031654-T-C | P5_Dst | ** | ||||||
20825052-C-A | 18663166-C-A | P4_Gap | ** | ||||||
20989269-G-T | 18827383-G-T | P4_Dst | ** | ||||||
21042260-C-A | 18880374-C-A | ** | |||||||
21049156-A-G | 18887270-A-G | ** | |||||||
21068331-G-T | 18906445-G-T | ** | |||||||
21283130-C-A | 19121244-C-A | ** | |||||||
21540803-C-A | 19378917-C-A | ** | |||||||
21581656-A-G | 19419770-A-G | ** | |||||||
21587822-C-A | 19425936-C-A | ** | |||||||
21588140-G-T | 19426254-G-T | ** | |||||||
21596854-C-A | 19434968-C-A | ** | |||||||
21599073-C-A | 19437187-C-A | ** | |||||||
21616787-C-A | 19454901-C-A | ** | |||||||
21665549-G-C | 19503663-G-C | ** | |||||||
21785937-C-A | 19624051-C-A | ** | |||||||
21950068-C-A | 19788182-C-A | ** | |||||||
22011889-G-A | 19850003-G-A | ** | |||||||
22171118-T-C | 20009232-T-C | ** | |||||||
22366317-A-G | 20204431-A-G | DYZ19 | ** | ||||||
22601970-C-A | 20440084-C-A | ** | |||||||
22638281-T-C | 20476395-T-C | ** | |||||||
22649487-A-T | 20487601-A-T | ** | |||||||
22659569-T-A | 20497683-T-A | ** | |||||||
22690507-G-T | 20528621-G-T | ** | |||||||
22877294-G-T | 20715408-G-T | ** | |||||||
22901956-C-A | 20740070-C-A | ** | |||||||
22901956-C-CA | 20740070-C-CA | ** | |||||||
22962128-T-C | 20800242-T-C | ** | |||||||
22991283-C-A | 20829397-C-A | ** | |||||||
23007286-G-T | 20845400-G-T | ** | |||||||
23019935-C-A | 20858049-C-A | ** | |||||||
23039453-T-C | 20877567-T-C | ** | |||||||
23047646-C-T | 20885760-C-T | FT182608 | ** | ||||||
23193206-G-C | 21031320-G-C | ** | |||||||
23253240-T-A | 21091354-T-A | ** | |||||||
23261339-T-C | 21099453-T-C | ** | |||||||
23285476-G-T | 21123590-G-T | ** | |||||||
23306036-T-A | 21144150-T-A | ** | |||||||
23319837-C-T | 21157951-C-T | ** | |||||||
23449103-T-A | 21287217-T-A | ** | |||||||
23483490-C-G | 21321604-C-G | ** | |||||||
23609222-A-ATT | 21447336-A-ATT | 14×T | ** | ||||||
23773800-G-T | 21611914-G-T | ** | |||||||
23801966-C-A | 21640080-C-A | ** | |||||||
23818933-T-G | 21657047-T-G | ** | |||||||
23886819-G-T | 21724933-G-T | ** | |||||||
23953740-G-T | 21807593-G-T | ** | |||||||
24406552-G-A | 22260405-G-A | ** | |||||||
24600650-A-G | 22454503-A-G | P3_t2 | ** | ||||||
24922443-C-A | 22776296-C-A | g1 | ** | ||||||
25601460-A-G | 23455313-A-G | P1_gr1 | ** | ||||||
25892422-T-A | 23746275-T-A | P1_Y1 | ** | ||||||
26064124-C-CA | 23917977-C-CA | P1_Y1 | ** | ||||||
26148074-A-AT | 24001927-A-AT | P1_Y1 | ** | ||||||
26181270-A-G | 24035123-A-G | P1_Y1 | ** | ||||||
27982239-C-A | 25836092-C-A | P1_Y2 | ** | ||||||
28005241-G-T | 25859094-G-T | P1_Y2 | ** | ||||||
28469512-A-T | 26323365-A-T | ** | |||||||
28481736-C-A | 26335589-C-A | FT108492 | ** | ||||||
28500117-C-T | 26353970-C-T | ** | |||||||
28532919-A-T | 26386772-A-T | ** | |||||||
28544919-A-C | 26398772-A-C | ** | |||||||
28579487-G-T | 26433340-G-T | ** | |||||||
28586569-T-A | 26440422-T-A | ** | |||||||
28592985-A-G | 26446838-A-G | ** | |||||||
28598974-G-C | 26452827-G-C | ** | |||||||
28622134-G-C | 26475987-G-C | ** | |||||||
28653777-T-C | 26507630-T-C | ** | |||||||
28684124-G-T | 26537977-G-T | ** | |||||||
28708176-AGT-A | 26562029-AGT-A | ** | |||||||
28730100-C-A | 26583953-C-A | ** | |||||||
28745155-C-A | 26599008-C-A | ** | |||||||
28762621-C-A | 26616474-C-A | ** | |||||||
28798486-G-T | 26652339-G-T | ** | |||||||
28812533-A-G | 26666386-A-G | ** | |||||||
28812613-G-C | 26666466-G-C | ** | |||||||
56842899-G-T | ** | ||||||||
56845822-G-T | ** | ||||||||
56846938-T-C | ** | ||||||||
56850451-T-C | ** | ||||||||
15076179-TC-T | 12964269-TC-T | *** | |||||||
10016604-A-G | 10178995-A-G | *** | |||||||
58978867-A-ACTCTT | 56832720-A-ACTCTT | *** | |||||||
58976220-C-T | 56830073-C-T | *** | |||||||
22249157-G-T | 20087271-G-T | DYZ19 | *** | ||||||
22466821-CT-C | 20304935-CT-C | DYZ19 | *** | ||||||
13450518-CCACTT-C,CCACTC | 11294842-CCACTT-C,CCACTC | *** | |||||||
58982820-A-C,G | 56836673-A-C,G | *** | |||||||
58982793-C-T | 56836646-C-T | *** | |||||||
3790878-G-GTATA | 3922837-G-GTATA | 21×TA | *** | ||||||
13452129-A-G | 11296453-A-G | *** | |||||||
56836642-C-G | *** | ||||||||
11003797-C-A | *** | ||||||||
13489416-G-C | 11333740-G-C | *** | |||||||
21554473-ATTTT-A | 19392587-ATTTT-A | 17×T | *** | ||||||
10934710-A-C,T | *** | ||||||||
14529234-CAAAA-C | 12417435-CAAAA-C | 15×A | *** | ||||||
22186713-C-CAA | 20024827-C-CAA | 16×A | *** | ||||||
9028893-TAA-T,TA | 9191284-TAA-T,TA | 18×A | *** | ||||||
13450508-CCACTCCACTCCACTT-C,CCACTCCACTC | 11294832-CCACTCCACTCCACTT-C,CCACTCCACTC | *** | |||||||
10764372-C-A | *** | ||||||||
4769363-C-A | 4901322-C-A | FT247864 | *** | ||||||
10748221-G-C | *** | ||||||||
10748238-A-T | *** | ||||||||
18923981-AAG-A,AAA | 16812101-AAG-A,AAA | *** | |||||||
16053411-C-A | 13941531-C-A | *** | |||||||
6080833-G-T | 6212792-G-T | *** | |||||||
6855499-C-A | 6987458-C-A | *** | |||||||
9702869-C-A | 9865260-C-A | FT84865 | IR3_Prx | *** | |||||
10013618-C-A | 10176009-C-A | *** | |||||||
10037548-G-A | 10199939-G-A | *** | |||||||
10755476-C-A | *** | ||||||||
10757989-ACACTC-A | *** | ||||||||
10761363-C-A | *** | ||||||||
10774104-G-T | *** | ||||||||
10786030-T-A | *** | ||||||||
10804860-C-A | *** | ||||||||
10868817-G-T | *** | ||||||||
10888005-CC-C,CG | *** | ||||||||
10918288-C-T | *** | ||||||||
10921207-A-T | *** | ||||||||
10948365-C-CT | *** | ||||||||
10971760-TC-T | *** | ||||||||
13454856-C-G | 11299180-C-G | *** | |||||||
13463935-G-T | 11308259-G-T | *** | |||||||
13471918-T-A,C | 11316242-T-A,C | *** | |||||||
14007942-CAAA-C | 11887236-CAAA-C | 15×A | *** | ||||||
14053523-C-A | 11932817-C-A | *** | |||||||
14165918-G-T | 12045212-G-T | *** | |||||||
14656151-CAAC-C,CAAT | 12544216-CAAC-C,CAAT | *** | |||||||
15464383-C-A | 13352503-C-A | *** | |||||||
15688985-C-A | 13577105-C-A | *** | |||||||
16060023-C-A | 13948143-C-A | *** | |||||||
16428479-A-T | 14316599-A-T | *** | |||||||
16945494-C-A | 14833614-C-A | *** | |||||||
17425004-G-T | 15313124-G-T | *** | |||||||
17425092-G-T | 15313212-G-T | *** | |||||||
17774911-G-T | 15663031-G-T | *** | |||||||
18627920-C-A | 16516040-C-A | *** | |||||||
18672601-C-A | 16560721-C-A | *** | |||||||
18753562-G-T | 16641682-G-T | *** | |||||||
18924752-C-A | 16812872-C-A | *** | |||||||
19486971-A-G | 17375091-A-G | *** | |||||||
22843740-CT-C,CTT | 20681854-CT-C,CTT | 12×T | *** | ||||||
23002853-GTATATA-G | 20840967-GTATATA-G | 17×TA | *** | ||||||
23079272-C-T | 20917386-C-T | *** | |||||||
23952904-C-T | 21806757-C-T | *** | |||||||
24421156-A-C | 22275009-A-C | Y112809 | *** | ||||||
26740566-TG-T | 24594419-TG-T | P1_g2 | *** | ||||||
28521067-C-A | 26374920-C-A | *** | |||||||
28784469-T-A | 26638322-T-A | *** | |||||||
56836676-C-A,G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.