1k Genomes
1kG: HG03742MDKA Birth: United Kingdom
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | 1kG HG03742 | Manual Edits |
---|---|---|---|---|---|---|---|---|---|
13643335-G-A | 11487659-G-A | + | |||||||
21562792-A-C | 19400906-A-C | FGC34961 BY13746 | Y | Y | + | ||||
22254652-A-G | 20092766-A-G | DYZ19 | + | ||||||
3716958-C-T | 3848917-C-T | Y29220 | + | ||||||
8504172-C-T | 8636131-C-T | Y29253 | Y | Y | + | ||||
13140128-C-A | 10629614-C-A | + | |||||||
13853311-T-A | 11732605-T-A | Y29262 | + | ||||||
22230526-C-T | 20068640-C-T | BY16281 | DYZ19 | + | |||||
2649663-C-T | 2781622-C-T | Y29215 | Y | + | |||||
2649666-A-G | 2781625-A-G | Y29216 | Y29216 | Y | + | ||||
2668400-A-G | 2800359-A-G | Y28299 | Y | Y | + | ||||
2688917-C-T | 2820876-C-T | Y29217 | Y | Y | + | ||||
2731109-C-T | 2863068-C-T | Y28300 | Y | Y | + | ||||
2807525-G-C | 2939484-G-C | Y28301 | Y | Y | + | ||||
2878123-G-C | 3010082-G-C | Y29219 | Y | Y | + | ||||
2890163-G-A | 3022122-G-A | BY161047 | B336 | Y | Y | + | |||
3018826-T-C | 3150785-T-C | FT315772 | + | ||||||
3089862-G-T | 3221821-G-T | FT316034 | + | ||||||
3135843-A-C | 3267802-A-C | FT316206 | + | ||||||
3183706-A-G | 3315665-A-G | FT316350 | + | ||||||
3221846-G-C | 3353805-G-C | FT316485 | + | ||||||
3233991-A-C | 3365950-A-C | FT316529 | + | ||||||
3341767-G-A | 3473726-G-A | FT316870 | + | ||||||
3502890-G-C | 3634849-G-C | FT317473 | + | ||||||
3568673-A-G | 3700632-A-G | FT317773 | + | ||||||
3582947-C-T | 3714906-C-T | + | |||||||
3719669-C-T | 3851628-C-T | Y28303 | + | ||||||
3845735-T-G | 3977694-T-G | FT318696 | + | ||||||
3942768-A-G | 4074727-A-G | FT319006 | + | ||||||
3960687-T-C | 4092646-T-C | FT319065 | + | ||||||
4162896-A-C | 4294855-A-C | FT319734 | + | ||||||
4214306-G-C | 4346265-G-C | FT319912 | + | ||||||
4230115-C-G | 4362074-C-G | FT319953 | + | ||||||
4257248-T-C | 4389207-T-C | FT320047 | + | ||||||
4338107-G-A | 4470066-G-A | FT110072 | + | ||||||
4488688-G-C | 4620647-G-C | FT320809 | + | ||||||
4527012-G-A | 4658971-G-A | FT320919 | + | ||||||
4529969-G-T | 4661928-G-T | FT320932 | + | ||||||
4617376-C-T | 4749335-C-T | FT321229 | + | ||||||
4632587-C-T | 4764546-C-T | FT39160 | + | ||||||
4699659-C-T | 4831618-C-T | FT321454 | + | ||||||
4715475-A-G | 4847434-A-G | FT321523 | + | ||||||
4825133-T-C | 4957092-T-C | FT321822 | + | ||||||
4957295-G-A | 5089254-G-A | FT273023 | + | ||||||
4984672-G-A | 5116631-G-A | FT322342 | + | ||||||
5101919-A-T | 5233878-A-T | FT322734 | + | ||||||
5129470-G-A | 5261429-G-A | FT322837 | + | ||||||
5185549-A-G | 5317508-A-G | FT323028 | + | ||||||
5192760-G-A | 5324719-G-A | FT323052 | + | ||||||
5193179-A-T | 5325138-A-T | Y29223 | + | ||||||
5200514-A-G | 5332473-A-G | FT323064 | + | ||||||
5213092-C-G | 5345051-C-G | FT323109 | + | ||||||
5273888-C-T | 5405847-C-T | BY59851 | FT32139 | + | |||||
5276859-A-G | 5408818-A-G | FT323368 | + | ||||||
5321103-C-A | 5453062-C-A | FT323531 | + | ||||||
5463690-C-A | 5595649-C-A | FT323992 | + | ||||||
5556896-G-C | 5688855-G-C | FT324295 | + | ||||||
5606019-G-T | 5737978-G-T | FT324465 | + | ||||||
5609738-A-G | 5741697-A-G | FT324487 | + | ||||||
5612910-G-A | 5744869-G-A | Y28305 | + | ||||||
5620715-G-T | 5752674-G-T | FT324539 | + | ||||||
5641579-A-G | 5773538-A-G | FT324600 | + | ||||||
5651889-C-T | 5783848-C-T | FT324639 | + | ||||||
5653159-G-T | 5785118-G-T | FT324643 | + | ||||||
5813806-C-T | 5945765-C-T | Y29224 | + | ||||||
5895807-T-C | 6027766-T-C | FT325429 | + | ||||||
6037620-T-C | 6169579-T-C | Y28306 | + | ||||||
6042220-T-C | 6174179-T-C | FT325950 | + | ||||||
6373690-G-T | 6505649-G-T | FT326355 | + | ||||||
6461927-A-G | 6593886-A-G | FT326620 | + | ||||||
6665441-G-C | 6797400-G-C | Y29225 | Y | + | |||||
6753305-G-C | 6885264-G-C | Y29226 | Y | Y | + | ||||
6756300-A-G | 6888259-A-G | Y29227 | Y | + | |||||
6860888-G-A | 6992847-G-A | Y28308 | Y | Y | + | ||||
6945417-A-G | 7077376-A-G | Y28309 | Y | Y | + | ||||
6947285-C-T | 7079244-C-T | Y29230 | Y | Y | + | ||||
6958854-G-A | 7090813-G-A | Y28310 | Y | Y | + | ||||
7087636-G-A | 7219595-G-A | Y28311 | Y | Y | + | ||||
7107675-A-G | 7239634-A-G | Y28312 | Y | Y | + | ||||
7142291-C-T | 7274250-C-T | Y29233 | Y | + | |||||
7149419-C-T | 7281378-C-T | Y29234 | Y | + | |||||
7153083-A-G | 7285042-A-G | Y29235 | Y | Y | + | ||||
7177347-T-G | 7309306-T-G | Y28314 | Y | Y | + | ||||
7194054-C-T | 7326013-C-T | Y28315 | Y | Y | + | ||||
7221666-C-G | 7353625-C-G | Y28316 | Y | + | |||||
7230074-A-C | 7362033-A-C | Y28317 | Y | Y | + | ||||
7246009-A-C | 7377968-A-C | Y29237 | Y | Y | + | ||||
7315880-T-C | 7447839-T-C | Y28318 | Y | Y | + | ||||
7381504-C-T | 7513463-C-T | Y29241 | Y | + | |||||
7385786-A-G | 7517745-A-G | Y29242 | Y | Y | + | ||||
7385842-G-T | 7517801-G-T | Y29243 | Y | Y | + | ||||
7435175-A-G | 7567134-A-G | Y28319 | Y | + | |||||
7592840-A-G | 7724799-A-G | Y28320 | Y | Y | + | ||||
7611699-C-T | 7743658-C-T | Y28321 | Y | Y | + | ||||
7625630-T-C | 7757589-T-C | Y29244 | Y | Y | + | ||||
7673170-C-A | 7805129-C-A | Y28322 | Y | Y | + | ||||
7715345-T-C | 7847304-T-C | Y28324 | Y | Y | + | ||||
7739051-T-C | 7871010-T-C | Y28326 | Y | Y | + | ||||
7748131-A-G | 7880090-A-G | Y28328 | Y | Y | + | ||||
7782669-C-T | 7914628-C-T | Y29245 | Y | Y | + | ||||
7900352-A-T | 8032311-A-T | Y28329 | Y | Y | + | ||||
7908215-C-A | 8040174-C-A | Y28330 | Y | Y | + | ||||
7932658-G-A | 8064617-G-A | Y28332 | Y | Y | + | ||||
7949980-T-C | 8081939-T-C | Y28334 | Y | Y | + | ||||
7971268-T-C | 8103227-T-C | Y28335 | Y | Y | + | ||||
8005627-C-G | 8137586-C-G | Y | + | ||||||
8025396-G-T | 8157355-G-T | Y28336 | Y | Y | + | ||||
8069071-C-G | 8201030-C-G | Y28337 | Y | Y | + | ||||
8082036-G-T | 8213995-G-T | Y29249 | Y | Y | + | ||||
8082367-T-G | 8214326-T-G | Y28338 | Y | Y | + | ||||
8100470-T-C | 8232429-T-C | Y29250 | Y | Y | + | ||||
8206899-T-C | 8338858-T-C | Y28339 | Y | Y | + | ||||
8247509-G-A | 8379468-G-A | Y28340 | Y | Y | + | ||||
8278685-G-A | 8410644-G-A | Y29251 | Y | + | |||||
8297737-C-T | 8429696-C-T | Y28341 | Y | Y | + | ||||
8311104-G-A | 8443063-G-A | Y28342 | Y | Y | + | ||||
8313757-G-C | 8445716-G-C | Y29252 | Y | Y | + | ||||
8360670-G-C | 8492629-G-C | Y28343 | Y | Y | + | ||||
8387589-G-A | 8519548-G-A | Y | Y | + | |||||
8523678-G-A | 8655637-G-A | Y29254 | Y | Y | + | ||||
8559597-T-C | 8691556-T-C | Y28344 | Y | Y | + | ||||
8579149-A-G | 8711108-A-G | Y28345 | Y | Y | + | ||||
8698111-A-G | 8830070-A-G | Y | Y | + | |||||
8716081-G-A | 8848040-G-A | Y29255 | Y | Y | + | ||||
8766094-C-T | 8898053-C-T | Y28346 | Y | Y | + | ||||
8813268-C-G | 8945227-C-G | Y29256 | Y | + | |||||
8852297-C-G | 8984256-C-G | Y29257 | Y | Y | + | ||||
8861524-C-T | 8993483-C-T | PF4472 | Y | Y | + | ||||
8866392-T-C | 8998351-T-C | Y28347 | Y | + | |||||
9025380-A-C | 9187771-A-C | F17654 | Y | + | |||||
9382079-A-T | 9544470-A-T | DC146 | Y | + | |||||
9446704-T-C | 9609095-T-C | Y28349 | Y | Y | + | ||||
9763189-C-T | 9925580-C-T | Y28351 | Y | + | |||||
9777453-C-T | 9939844-C-T | Y29258 | Y | + | |||||
9850794-C-A | 10013185-C-A | F17978 | Y | Y | + | ||||
9852751-C-T | 10015142-C-T | Y28352 | Y | Y | + | ||||
9913432-C-A | 10075823-C-A | Y29260 | Y | + | |||||
9924532-T-C | 10086923-T-C | Y | + | ||||||
10018290-C-T | 10180681-C-T | Y | + | ||||||
10020686-CTCTG-C | 10183077-CTCTG-C | + | |||||||
10073414-T-G | 10235805-T-G | Y33975 | + | ||||||
13133372-A-T | 10622858-A-T | Y29261 | + | ||||||
13216411-C-A | 11060735-C-A | + | |||||||
13239068-G-A | 11083392-G-A | + | |||||||
13242625-A-G | 11086949-A-G | + | |||||||
13291707-G-T | 11136031-G-T | FTB9048 | + | ||||||
13292384-T-C | 11136708-T-C | + | |||||||
13305706-C-T | 11150030-C-T | + | |||||||
13308261-C-T | 11152585-C-T | FTB9033 | + | ||||||
13335664-A-G | 11179988-A-G | + | |||||||
13345443-G-A | 11189767-G-A | + | |||||||
13369906-C-T | 11214230-C-T | + | |||||||
13402754-C-T | 11247078-C-T | + | |||||||
13403385-G-A | 11247709-G-A | FTB9029 | + | ||||||
13412251-A-T | 11256575-A-T | FTB42671 | + | ||||||
13427313-A-T | 11271637-A-T | + | |||||||
13459539-C-G | 11303863-C-G | + | |||||||
13461557-G-T | 11305881-G-T | + | |||||||
13487213-G-C | 11331537-G-C | + | |||||||
13497031-A-G | 11341355-A-G | + | |||||||
13516463-C-G | 11360787-C-G | + | |||||||
13520541-C-G | 11364865-C-G | + | |||||||
13552212-A-G | 11396536-A-G | FTB9036 | + | ||||||
13586395-G-C | 11430719-G-C | + | |||||||
13655381-G-T | 11499705-G-T | FTB9052 | + | ||||||
13665928-G-A | 11510252-G-A | FTB9053 | + | ||||||
13715378-A-T | 11559702-A-T | + | |||||||
13812062-G-T | 11691356-G-T | Y28353 | + | ||||||
13812404-A-G | 11691698-A-G | Y28354 | + | ||||||
13816202-T-C | 11695496-T-C | Y28355 | + | ||||||
13848197-T-C | 11727491-T-C | Y28357 | + | ||||||
13852496-G-A | 11731790-G-A | Y28358 | + | ||||||
13888919-T-C | 11768213-T-C | Y29263 | Y | + | |||||
13910800-A-G | 11790094-A-G | FT281277 | Y | + | |||||
13921304-G-T | 11800598-G-T | Y28360 | Y | + | |||||
13977419-G-T | 11856713-G-T | Y35069 | Y | + | |||||
13982053-G-T | 11861347-G-T | FT281325 | Y | + | |||||
14004444-A-G | 11883738-A-G | Y28362 | Y | Y | + | ||||
14027788-C-A | 11907082-C-A | Y29264 | Y | Y | + | ||||
14027790-T-G | 11907084-T-G | Y28363 | Y | Y | + | ||||
14086196-C-T | 11965490-C-T | Y29266 | Y | + | |||||
14118933-C-G | 11998227-C-G | Y38126 | Y | + | |||||
14135842-T-C | 12015136-T-C | Y29269 | Y | + | |||||
14163165-G-A | 12042459-G-A | Y38257 | Y | + | |||||
14218086-G-A | 12097380-G-A | Y28365 | Y | Y | + | ||||
14222000-G-C | 12101294-G-C | Y28366 | Y | Y | + | ||||
14232866-C-T | 12112160-C-T | Y28367 | Y | Y | + | ||||
14258858-T-C | 12138152-T-C | Y29273 | Y | + | |||||
14300005-A-G | 12179299-A-G | Y29274 | Y | Y | + | ||||
14315893-T-C | 12195187-T-C | Y28368 | Y | Y | + | ||||
14339256-A-T | 12218551-A-T | Y28369 | Y | Y | + | ||||
14358789-G-A | 12238084-G-A | Y28370 | Y | Y | + | ||||
14400598-C-T | 12279895-C-T | Y28371 | Y | Y | + | ||||
14426179-A-T | 12305454-A-T | Y28372 | Y | Y | + | ||||
14453382-T-C | 12332655-T-C | Y28373 | Y | Y | + | ||||
14460974-A-G | 12340247-A-G | Y28374 | Y | Y | + | ||||
14499165-G-A | 12387370-G-A | PR1483 A19218 | Y | Y | + | ||||
14555009-A-C | 12443210-A-C | Y29278 | Y | Y | + | ||||
14565225-G-A | 12453425-G-A | Y29279 | Y | + | |||||
14570451-G-T | 12458651-G-T | Y29280 | Y | Y | + | ||||
14604049-G-A | 12492251-G-A | Y28376 | Y | Y | + | ||||
14682216-C-T | 12570282-C-T | Y29281 | Y | + | |||||
14696459-G-A | 12584525-G-A | Y28377 | Y | Y | + | ||||
14757133-T-C | 12645202-T-C | Y29282 | Y | + | |||||
14762418-C-T | 12650487-C-T | Y29283 | Y | Y | + | ||||
14811837-T-C | 12699908-T-C | Y28379 | Y | Y | + | ||||
14826478-A-G | 12714545-A-G | Y28380 | Y | Y | + | ||||
14853339-G-A | 12741405-G-A | Y28381 | Y | Y | + | ||||
14943506-C-G | 12831580-C-G | Y29285 | Y | Y | + | ||||
14972020-T-G | 12860095-T-G | Y29286 | Y | Y | + | ||||
14991751-A-T | 12879836-A-T | Y28383 | Y | Y | + | ||||
15055512-A-T | 12943604-A-T | Y29288 | Y | Y | + | ||||
15067862-A-G | 12955953-A-G | Y28385 | Y | Y | + | ||||
15151131-G-C | 13039218-G-C | Y28386 | Y | Y | + | ||||
15169494-A-G | 13057580-A-G | Y29289 | Y | + | |||||
15204850-T-G | 13092936-T-G | Y28387 | Y | Y | + | ||||
15212778-G-A | 13100864-G-A | Y38258 | Y | + | |||||
15228456-G-A | 13116542-G-A | Y29290 | Y | + | |||||
15228457-C-A | 13116543-C-A | Y29291 | Y | + | |||||
15234611-G-A | 13122697-G-A | Y28388 | Y | + | |||||
15289967-G-A | 13178066-G-A | Y28389 | Y | + | |||||
15347981-A-G | 13236100-A-G | Y28390 | Y | Y | + | ||||
15388849-C-G | 13276969-C-G | Y28391 | Y | Y | + | ||||
15394720-T-C | 13282840-T-C | Y29292 | Y | + | |||||
15407373-C-T | 13295493-C-T | Y28392 | Y | Y | + | ||||
15448718-A-G | 13336838-A-G | Y28393 | Y | Y | + | ||||
15513747-G-A | 13401867-G-A | Y29293 | Y | Y | + | ||||
15547447-C-T | 13435567-C-T | Y29294 | Y | Y | + | ||||
15560022-C-A | 13448142-C-A | Y29295 | Y | Y | + | ||||
15588009-C-T | 13476129-C-T | Y29296 | Y | Y | + | ||||
15679494-C-G | 13567614-C-G | Y28397 | Y | + | |||||
15760643-A-G | 13648763-A-G | Y29298 | Y | + | |||||
15788399-A-G | 13676519-A-G | Y29299 | Y | + | |||||
15792532-C-T | 13680652-C-T | Y28399 | Y | Y | + | ||||
15797498-T-A | 13685618-T-A | Y29300 | Y | + | |||||
15857928-C-A | 13746048-C-A | Y29302 | Y | + | |||||
15922345-A-T | 13810465-A-T | Y28401 | Y | + | |||||
15978469-A-G | 13866589-A-G | Y28402 | Y | Y | + | ||||
15979855-C-A | 13867975-C-A | Y29303 | Y | Y | + | ||||
16433380-G-C | 14321500-G-C | Y28406 | Y | Y | + | ||||
16451192-T-C | 14339312-T-C | Y28407 | Y | Y | + | ||||
16462897-C-G | 14351017-C-G | Y28408 | Y | + | |||||
16495867-A-G | 14383987-A-G | Y28410 | Y | Y | + | ||||
16498020-G-C | 14386140-G-C | Y28411 | Y | Y | + | ||||
16514779-G-A | 14402899-G-A | Y28412 | Y | Y | + | ||||
16521504-C-T | 14409624-C-T | Y28413 | Y | Y | + | ||||
16562084-A-G | 14450204-A-G | Y28414 | Y | Y | + | ||||
16596447-A-G | 14484567-A-G | Y28415 | Y | Y | + | ||||
16707197-G-A | 14595317-G-A | Y29306 | Y | + | |||||
16720674-A-G | 14608794-A-G | Y29307 | Y | + | |||||
16757943-A-G | 14646063-A-G | Y28417 | Y | Y | + | ||||
16797459-G-A | 14685579-G-A | Y28418 | Y | Y | + | ||||
16810674-A-G | 14698794-A-G | Y29308 | Y | Y | + | ||||
16826664-C-G | 14714784-C-G | Y29310 | Y | Y | + | ||||
16913337-C-G | 14801457-C-G | Y29311 | Y | Y | + | ||||
16996988-A-G | 14885108-A-G | Y29312 | Y | + | |||||
17194961-A-G | 15083081-A-G | Y29315 | Y | Y | + | ||||
17293695-C-T | 15181815-C-T | Y28421 | Y | Y | + | ||||
17315115-C-T | 15203235-C-T | Y28422 | Y | Y | + | ||||
17331802-T-G | 15219922-T-G | Y28423 | Y | Y | + | ||||
17366816-G-A | 15254936-G-A | Y28424 | Y | Y | + | ||||
17413971-C-T | 15302091-C-T | Y28425 | Y | Y | + | ||||
17460366-G-A | 15348486-G-A | Y28426 | Y | Y | + | ||||
17469255-G-C | 15357375-G-C | Y28427 | Y | Y | + | ||||
17546141-G-T | 15434261-G-T | Y29318 | Y | Y | + | ||||
17556021-A-T | 15444141-A-T | Y29319 | Y | Y | + | ||||
17624219-G-A | 15512339-G-A | Y28429 | Y | Y | + | ||||
17636215-A-G | 15524335-A-G | Y29320 | Y | + | |||||
17706944-A-G | 15595064-A-G | Y28431 | Y | Y | + | ||||
17715003-C-G | 15603123-C-G | Y28432 | Y | Y | + | ||||
17770320-A-G | 15658440-A-G | Y29321 | Y | Y | + | ||||
17800664-G-T | 15688784-G-T | Y29322 | Y | Y | + | ||||
17822520-T-C | 15710640-T-C | Y29323 | Y | + | |||||
17827869-C-T | 15715989-C-T | Y29324 | Y | + | |||||
17828554-G-C | 15716674-G-C | Y29325 | Y | + | |||||
17832205-T-A | 15720325-T-A | Y28434 | Y | Y | + | ||||
17890046-G-A | 15778166-G-A | Y28435 | Y | Y | + | ||||
17892962-T-G | 15781082-T-G | Y28436 | Y | Y | + | ||||
17923544-G-C | 15811664-G-C | Y28437 | Y | Y | + | ||||
17932877-A-C | 15820997-A-C | Y29327 | Y | + | |||||
18026588-T-C | 15914708-T-C | Y28439 | Y | + | |||||
18044286-G-A | 15932406-G-A | Y28440 | Y | Y | + | ||||
18048272-T-G | 15936392-T-G | Y28441 | Y | Y | + | ||||
18106923-C-T | 15995043-C-T | Y29329 | Y | Y | + | ||||
18133720-G-T | 16021840-G-T | Y29330 | Y | + | |||||
18183571-C-G | 16071691-C-G | Y29331 | Y | + | |||||
18226543-C-A | 16114663-C-A | Y29333 | + | ||||||
18243689-T-C | 16131809-T-C | Y28443 | Y | + | |||||
18560453-A-C | 16448573-A-C | Y28444 | Y | Y | + | ||||
18564931-C-T | 16453051-C-T | Y28445 | Y | Y | + | ||||
18576991-T-C | 16465111-T-C | Y28446 | Y | Y | + | ||||
18621466-G-T | 16509586-G-T | Y29334 | Y | Y | + | ||||
18731530-G-A | 16619650-G-A | Y28447 | Y | Y | + | ||||
18752981-G-A | 16641101-G-A | Y28449 | Y | Y | + | ||||
18756753-A-T | 16644873-A-T | Y29335 | Y | Y | + | ||||
18782398-C-T | 16670518-C-T | Y28450 | Y | Y | + | ||||
18800701-G-A | 16688821-G-A | Y29336 | Y | + | |||||
18830493-C-T | 16718613-C-T | Y28452 | Y | Y | + | ||||
18909080-T-G | 16797200-T-G | Y28454 | Y | Y | + | ||||
18927496-C-T | 16815616-C-T | Y29337 | Y | Y | + | ||||
18988340-C-T | 16876460-C-T | Y29338 | Y | + | |||||
19004916-A-G | 16893036-A-G | Y28455 | Y | Y | + | ||||
19086735-T-A | 16974855-T-A | Y28456 | Y | Y | + | ||||
19090865-T-C | 16978985-T-C | Y28457 | Y | Y | + | ||||
19094493-A-G | 16982613-A-G | Y28458 | Y | Y | + | ||||
19104359-A-C | 16992479-A-C | Y29339 | Y | Y | + | ||||
19129442-A-G | 17017562-A-G | Y29340 | Y | Y | + | ||||
19133798-G-A | 17021918-G-A | Y28459 | Y | Y | + | ||||
19164557-C-A | 17052677-C-A | Y28461 | Y | + | |||||
19249667-G-T | 17137787-G-T | Y29341 | Y | + | |||||
19268867-T-C | 17156987-T-C | Y28463 | Y | Y | + | ||||
19269628-C-A | 17157748-C-A | Y28464 | Y | Y | + | ||||
19273820-A-T | 17161940-A-T | Y28465 | Y | Y | + | ||||
19321245-A-G | 17209365-A-G | Y28466 | Y | Y | + | ||||
19329213-C-T | 17217333-C-T | Y29342 | Y | + | |||||
19333414-A-G | 17221534-A-G | Y29343 | Y | Y | + | ||||
19342048-G-A | 17230168-G-A | Y28467 | Y | Y | + | ||||
19434543-G-A | 17322663-G-A | Y29344 | Y | + | |||||
19437815-G-A | 17325935-G-A | Y29345 | Y | + | |||||
19450149-G-A | 17338269-G-A | Y28468 | Y | Y | + | ||||
19460863-G-C | 17348983-G-C | Y28469 | Y | Y | + | ||||
19466001-G-A | 17354121-G-A | Y28470 | Y | Y | + | ||||
19516656-C-T | 17404776-C-T | Y28472 | Y | Y | + | ||||
19524125-G-T | 17412245-G-T | Y29346 | Y | Y | + | ||||
19535000-G-A | 17423120-G-A | Y28473 | Y | Y | + | ||||
21032233-A-G | 18870347-A-G | Y28474 | Y | + | |||||
21077645-T-G | 18915759-T-G | Y29348 | Y | + | |||||
21141013-C-T | 18979127-C-T | Y29349 | Y | Y | + | ||||
21182230-C-T | 19020344-C-T | Y28476 | Y | Y | + | ||||
21193815-A-G | 19031929-A-G | Y28478 | Y | Y | + | ||||
21210386-T-A | 19048500-T-A | Y28479 | Y | Y | + | ||||
21292688-C-T | 19130802-C-T | Y28480 | Y | Y | + | ||||
21319844-G-A | 19157958-G-A | Y28481 | Y | Y | + | ||||
21336578-G-A | 19174692-G-A | Y29350 | Y | + | |||||
21375121-C-T | 19213235-C-T | Y28482 | Y | Y | + | ||||
21380587-A-G | 19218701-A-G | Y29351 | Y | + | |||||
21387042-T-C | 19225156-T-C | Y29352 | Y | + | |||||
21398765-G-A | 19236879-G-A | Y29353 | Y | Y | + | ||||
21432148-G-A | 19270262-G-A | Y29354 | Y | Y | + | ||||
21458999-C-T | 19297113-C-T | Y29355 | Y | + | |||||
21579898-C-A | 19418012-C-A | Y29358 | Y | + | |||||
21589427-C-T | 19427541-C-T | Y29359 | Y | Y | + | ||||
21601649-T-C | 19439763-T-C | Y29360 | Y | + | |||||
21630245-T-G | 19468359-T-G | Y29361 | Y | + | |||||
21637439-C-G | 19475553-C-G | Y28483 | Y | Y | + | ||||
21822607-C-A | 19660721-C-A | Y29362 | Y | Y | + | ||||
21875153-G-A | 19713267-G-A | Y29363 | Y | Y | + | ||||
21875200-A-G | 19713314-A-G | Y28484 | Y | Y | + | ||||
21884048-T-C | 19722162-T-C | Y28486 | Y | Y | + | ||||
21910174-A-G | 19748288-A-G | Y28487 | Y | + | |||||
21923975-G-A | 19762089-G-A | Y29364 | Y | Y | + | ||||
22060041-A-G | 19898155-A-G | Y29367 | Y | + | |||||
22085887-G-A | 19924001-G-A | F25009 | Y | Y | + | ||||
22121099-G-A | 19959213-G-A | Y28489 | Y | Y | + | ||||
22134760-A-G | 19972874-A-G | Y29369 | Y | + | |||||
22151362-A-T | 19989476-A-T | Y29370 | Y | + | |||||
22186024-A-C | 20024138-A-C | Y28490 | Y | Y | + | ||||
22216670-G-A | 20054784-G-A | Y28491 | + | ||||||
22228843-T-C | 20066957-T-C | DYZ19 | + | ||||||
22244438-G-T | 20082552-G-T | DYZ19 | + | ||||||
22246738-G-A | 20084852-G-A | FGC17840 | DYZ19 | + | |||||
22270879-G-T | 20108993-G-T | DYZ19 | + | ||||||
22272592-G-A | 20110706-G-A | DYZ19 | + | ||||||
22278179-C-T | 20116293-C-T | DYZ19 | + | ||||||
22279418-A-G | 20117532-A-G | DYZ19 | + | ||||||
22279781-T-G | 20117895-T-G | DYZ19 | + | ||||||
22280528-T-G | 20118642-T-G | DYZ19 | + | ||||||
22281532-C-G | 20119646-C-G | DYZ19 | + | ||||||
22281624-C-T | 20119738-C-T | DYZ19 | + | ||||||
22288610-A-C | 20126724-A-C | BY216252 | DYZ19 | + | |||||
22299164-G-T | 20137278-G-T | DYZ19 | + | ||||||
22299760-G-A | 20137874-G-A | Y28492 | DYZ19 | + | |||||
22316851-C-T | 20154965-C-T | DYZ19 | + | ||||||
22335045-A-T | 20173159-A-T | DYZ19 | + | ||||||
22426792-T-C | 20264906-T-C | DYZ19 | + | ||||||
22428670-T-G | 20266784-T-G | DYZ19 | + | ||||||
22436606-A-C | 20274720-A-C | DYZ19 | + | ||||||
22439250-G-T | 20277364-G-T | DYZ19 | + | ||||||
22467193-C-G | 20305307-C-G | DYZ19 | + | ||||||
22469873-C-G | 20307987-C-G | BY30520 | DYZ19 | + | |||||
22472761-G-T | 20310875-G-T | DYZ19 | + | ||||||
22473319-C-A | 20311433-C-A | BY164509 | BY165768 | DYZ19 | + | ||||
22476251-G-C | 20314365-G-C | DYZ19 | + | ||||||
22484083-G-T | 20322197-G-T | DYZ19 | + | ||||||
22485458-G-T | 20323572-G-T | DYZ19 | + | ||||||
22505787-G-C | 20343901-G-C | DYZ19 | + | ||||||
22506987-G-C | 20345101-G-C | Y29373 | DYZ19 | + | |||||
22519550-G-A | 20357664-G-A | Y28493 | Y | + | |||||
22544259-T-G | 20382373-T-G | Y29374 | Y | + | |||||
22545929-T-C | 20384043-T-C | Y29375 | Y | + | |||||
22566428-T-G | 20404542-T-G | Y28494 | Y | Y | + | ||||
22656269-C-T | 20494383-C-T | Y28495 | Y | Y | + | ||||
22799661-T-A | 20637775-T-A | Y29377 | Y | + | |||||
22817536-A-T | 20655650-A-T | Y28498 | Y | Y | + | ||||
22862093-C-T | 20700207-C-T | Y29378 | Y | Y | + | ||||
22945371-A-G | 20783485-A-G | Y28500 | Y | Y | + | ||||
23065459-A-G | 20903573-A-G | Y29381 | Y | + | |||||
23084752-T-C | 20922866-T-C | Y | + | ||||||
23100348-T-A | 20938462-T-A | FT284735 | Y | + | |||||
23121520-A-T | 20959634-A-T | Y28503 | Y | Y | + | ||||
23202652-C-G | 21040766-C-G | Y29384 | Y | + | |||||
23226279-T-A | 21064393-T-A | Y29385 | Y | + | |||||
23261669-A-T | 21099783-A-T | Y29386 | Y | Y | + | ||||
23423314-G-A | 21261428-G-A | Y28505 | Y | Y | + | ||||
23566207-C-T | 21404321-C-T | Y28508 | Y | Y | + | ||||
23625356-C-T | 21463470-C-T | Y28509 | Y | Y | + | ||||
23772823-T-A | 21610937-T-A | Y29387 | Y | + | |||||
23800694-C-G | 21638808-C-G | Y28510 | Y | + | |||||
23811309-C-G | 21649423-C-G | F26402 | Y | + | |||||
23815900-G-A | 21654014-G-A | F26412 | Y | + | |||||
23836727-C-T | 21674841-C-T | F26445 | Y | + | |||||
23868907-G-A | 21707021-G-A | F26487 | Y | + | |||||
23894295-C-T | 21732409-C-T | F26517 | Y | + | |||||
23898850-G-T | 21736964-G-T | Y33983 | + | ||||||
24003229-C-T | 21857082-C-T | Y38259 | Y | + | |||||
24095972-T-C | 21949825-T-C | P3_b1 | + | ||||||
24355432-T-A | 22209285-T-A | Y28512 | + | ||||||
24378767-C-T | 22232620-C-T | Y29388 | Y | + | |||||
24416829-T-A | 22270682-T-A | Y29389 | Y | + | |||||
24417069-A-G | 22270922-A-G | Y29390 | Y | + | |||||
24511870-A-G | 22365723-A-G | Y28514 | + | ||||||
27396913-C-T | 25250766-C-T | P1_g3 | + | ||||||
28497625-C-T | 26351478-C-T | Y28515 | Y | + | |||||
28529531-T-G | 26383384-T-G | Y29391 | + | ||||||
28532043-T-C | 26385896-T-C | Y29392 | Y | + | |||||
28597921-C-A | 26451774-C-A | Y29395 | + | ||||||
28625627-A-T | 26479480-A-T | Y29396 | + | ||||||
28657237-A-G | 26511090-A-G | Y28516 | + | ||||||
28701602-A-G | 26555455-A-G | Y28517 | + | ||||||
28737403-T-C | 26591256-T-C | Y29397 | + | ||||||
28745958-A-G | 26599811-A-G | Y29398 | Y | + | |||||
28766599-A-G | 26620452-A-G | Y28518 | Y | + | |||||
28783643-C-T | 26637496-C-T | Y28519 | + | ||||||
28790041-T-G | 26643894-T-G | Y29399 | + | ||||||
28809166-G-C | 26663019-G-C | FTB9031 | + | ||||||
28810743-T-A | 26664596-T-A | FTB9054 | + | ||||||
58995128-G-A | 56848981-G-A | + | |||||||
18470756-C-A | 16358876-C-A | P6_Dst | * |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
---|---|---|---|
Manual | 18338340-G-T | 16226460-G-T | 1G 1T |
Manual | 18470756-C-A | 16358876-C-A | 3C 2A |