Hayes

FTDNA: 95100, BigY2: 95100, BigY3: 95100

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > L513/S215/DF1 > S5668 > Z16357 > Z16343 > Z16854 > Z8908

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
95100		BigY2
95100
22483066-G-A 20321180-G-A DYZ19 **A+
26137563-T-C 23991416-T-C P1_Y1 ***A*
26318847-C-T 24172700-C-T P1_Y1 ***A*
21620548-T-C 19458662-T-C FGC18280 YYA*
22610030-C-CT 20448144-C-CT 10×TA*
13687846-A-T 11532170-A-T DYZ17 A*
21180074-C-CA 19018188-C-CA 10×AA*
22973887-T-A 20812001-T-A YYA*
10760018-T-A A*
20019216-G-A 17907336-G-A P5_Prx A*
11014463-A-T A*
20019210-A-T 17907330-A-T P5_Prx A*
19965210-C-A 17853330-C-A P5_Prx A*
20230137-T-A 18068251-T-A P5_Dst A*
20772833-G-T 18610947-G-T P4_Prx A*
17028493-C-A 14916613-C-A YYA*
22445996-A-G 20284110-A-G YFS033271 DYZ19 +
7572358-G-A 7704317-G-A FGC33417 YY++
17865028-T-C 15753148-T-C FGC33420 YY++
22446004-T-A 20284118-T-A DYZ19 +
23544443-A-G 21382557-A-G FGC33421 YY++
22298702-C-T 20136816-C-T DYZ19 ****
13702806-A-G 11547130-A-G DYZ17 **
13702808-G-A 11547132-G-A DYZ17 **
58908843-C-T 56682028-G-A 12×CCATT**
13858144-C-T 11737438-C-T DYZ17 **
13800941-A-T 11680235-A-T DYZ17 **
28804479-A-G 26658332-A-G **
6144633-G-A 6276592-G-A FGC33416 IR3_Dst ****
13732575-A-G 11576899-A-G DYZ17 **
17920873-T-C 15808993-T-C **
14080035-GATATATATATAT-G 11959329-GATATATATATAT-G 29×AT**
10831520-G-A **
10831530-A-C **
10831532-T-C **
10831551-C-A **
10831560-C-T **
10764575-C-CACTGG **
10764619-C-G **
10889775-C-CTCTTGGGTGG **
10889798-T-C **
10935616-C-T **
10777976-C-T FT430775 **
10973628-G-A **
10751693-C-T **
10751703-T-C **
10751711-C-A **
10751733-G-C **
11021401-C-T **
10982745-C-A **
14008778-GAAAAAA-G 11888072-GAAAAAA-G 25×A**
5460390-T-C 5592349-T-C **
7335736-G-T 7467695-G-T **
24267288-G-T 22121141-G-T P3_b1 **
27847759-TG-T 25701612-TG-T P1_Y2 **
10989908-T-C **
28513661-C-A 26367514-C-A **
10989865-C-T **
10989895-C-G **
10850866-T-A **
10861130-C-A **
10850837-T-A **
10850872-T-C **
10839814-G-T **
10935596-C-A **
10781731-C-A **
10812175-C-A **
10834655-C-A **
9811208-G-T 9973599-G-T **
3832004-C-A 3963963-C-A **
10787460-C-A **
3156148-C-T 3288107-C-T **
4177065-G-T 4309024-G-T **
4929004-C-A 5060963-C-A **
5339867-G-T 5471826-G-T **
5358632-G-T 5490591-G-T **
5542439-G-T 5674398-G-T **
5680089-C-A 5812048-C-A **
5682667-C-A 5814626-C-A **
6308231-A-G 6440190-A-G IR3_Dst **
7562079-C-A 7694038-C-A **
8525345-C-A 8657304-C-A **
9689276-T-TC 9851667-T-TC IR3_Prx **
9811214-G-T 9973605-G-T **
10653461-C-A **
10781720-C-G **
10781736-C-T **
10781739-A-T **
10796767-C-A **
10803550-C-T **
10813517-C-A **
10834789-G-T **
10847318-A-G **
10851858-C-A **
10893092-C-A **
10899803-C-A **
10929401-G-T **
10941130-G-T **
10952329-C-A **
11000548-C-G **
11003914-G-T **
11003955-C-T **
11027916-T-C **
11038082-C-A **
13227809-C-A 11072133-C-A **
13493555-T-C 11337879-T-C **
13617515-A-G 11461839-A-G FGC33418 **
13642796-C-A 11487120-C-A **
13809813-C-T 11689107-C-T FT236397 DYZ17 **
15565501-A-G 13453621-A-G **
15658075-C-A 13546195-C-A **
15743740-C-A 13631860-C-A **
16727480-C-A 14615600-C-A **
18317673-A-T 16205793-A-T FT118322 P6_Prx **
18529077-G-T 16417197-G-T P6_Dst **
18660114-T-C 16548234-T-C **
19075503-T-C 16963623-T-C **
19253327-C-A 17141447-C-A **
22091498-C-A 19929612-C-A **
24258213-G-T 22112066-G-T P3_b1 **
24267299-G-T 22121152-G-T P3_b1 **
28019492-C-T 25873345-C-T P1_Y2 **
28669206-G-A 26523059-G-A **
9307396-C-G 9469787-C-G ***
13454746-T-C 11299070-T-C ***
13458648-T-C 11302972-T-C ***
13731927-A-AGAATG 11576251-A-AGAATG DYZ17 ***
13832900-G-T 11712194-G-T DYZ17 ***
22490746-G-T 20328860-G-T DYZ19 ***
22505391-G-C 20343505-G-C DYZ19 ***
58980632-T-C 56834485-T-C ***
13697405-G-A 11541729-G-A DYZ17 ***
13697406-G-T 11541730-G-T DYZ17 ***
13676586-T-G 11520910-T-G DYZ17 ***
22504342-G-C 20342456-G-C DYZ19 ***
13489626-C-A 11333950-C-A ***
13489639-C-A 11333963-C-A ***
13697407-C-G 11541731-C-G DYZ17 ***
13853037-C-G 11732331-C-G DYZ17 ***
13858510-A-G 11737804-A-G FT29545 DYZ17 15×AATGG***
22490747-T-C 20328861-T-C DYZ19 ***
25998906-GT-G 23852759-GT-G P1_Y1 11×T***
13680870-G-C 11525194-G-C DYZ17 ***
28785649-A-G 26639502-A-G ***
58975714-G-A 56829567-G-A ***
58975720-C-T 56829573-C-T ***
10035731-T-A 10198122-T-A ***
13451935-T-C 11296259-T-C ***
13681114-C-T 11525438-C-T DYZ17 ***
22366183-G-A 20204297-G-A DYZ19 ***
58976789-T-C 56830642-T-C ***
58976798-T-A 56830651-T-A ***
13142271-C-T 10631757-C-T ***
13454040-G-C 11298364-G-C ***
13454337-A-C 11298661-A-C ***
13467154-T-C 11311478-T-C ***
13677944-A-G 11522268-A-G DYZ17 ***
13680761-G-C 11525085-G-C DYZ17 ***
13680804-T-A 11525128-T-A DYZ17 ***
13680889-T-C 11525213-T-C DYZ17 ***
13680904-T-C 11525228-T-C DYZ17 ***
13688432-C-G 11532756-C-G DYZ17 ***
13694391-G-C 11538715-G-C DYZ17 ***
13715220-A-T 11559544-A-T DYZ17 ***
13715221-T-A 11559545-T-A BY6657 DYZ17 ***
13735015-G-C 11579339-G-C DYZ17 ***
13809853-C-G 11689147-C-G DYZ17 ***
13817525-A-C 11696819-A-C DYZ17 ***
13817530-G-A 11696824-G-A FT350271 DYZ17 ***
13817532-C-G 11696826-C-G DYZ17 ***
13818049-G-A 11697343-G-A DYZ17 ***
13818837-A-G 11698131-A-G DYZ17 ***
13838304-A-G 11717598-A-G DYZ17 ***
13851441-T-G 11730735-T-G DYZ17 ***
13851445-A-T 11730739-A-T DYZ17 ***
13851476-A-G 11730770-A-G DYZ17 ***
13866889-C-G 11746183-C-G DYZ17 ***
13868085-T-C 11747379-T-C DYZ17 ***
13869147-A-C 11748441-A-C DYZ17 ***
13869970-T-G 11749264-T-G DYZ17 ***
13869975-C-G 11749269-C-G DYZ17 ***
13869985-A-C 11749279-A-C BY91745 DYZ17 ***
22295969-TA-T 20134083-TA-T DYZ19 ***
28785764-A-G 26639617-A-G ***
28787560-G-T 26641413-G-T AM01977 ***
28800190-A-T 26654043-A-T ***
28800279-A-G 26654132-A-G ***
28805532-A-G 26659385-A-G FT462382 ***
58973023-C-T 56826876-C-T ***
58976775-A-T 56830628-A-T ***
58978246-T-A 56832099-T-A ***
58978247-C-T 56832100-C-T ***
58978257-C-T 56832110-C-T ***
58980792-T-C 56834645-T-C ***
13461127-A-C 11305451-A-C ***
13652247-A-G 11496571-A-G DYZ17 ***
13869284-G-A 11748578-G-A DYZ17 ***
58819394-T-G 56771477-A-C ***
58819398-G-A 56771473-C-T ***
13867782-C-G 11747076-C-G F18261 DYZ17 ***
9997490-C-G 10159881-C-G ***
9997491-C-G 10159882-C-G ***
13406072-G-T 11250396-G-T ***
13454726-A-C 11299050-A-C ***
13456361-T-C 11300685-T-C ***
13674233-A-G 11518557-A-G DYZ17 ***
13674265-A-T 11518589-A-T DYZ17 ***
13680775-G-C 11525099-G-C DYZ17 ***
13680779-T-C 11525103-T-C DYZ17 ***
13680785-G-C 11525109-G-C DYZ17 ***
13680786-G-C 11525110-G-C DYZ17 ***
13801220-A-T 11680514-A-T DYZ17 ***
13838102-A-G 11717396-A-G DYZ17 ***
28801724-C-G 26655577-C-G ***
28805525-T-G 26659378-T-G ***
13457786-G-C 11302110-G-C 4×ATTCC***
13701769-C-G 11546093-C-G DYZ17 ***
13818026-A-T 11697320-A-T DYZ17 ***
13866899-T-G 11746193-T-G DYZ17 ***
13866900-T-G 11746194-T-G DYZ17 ***
13868415-G-C 11747709-G-C DYZ17 ***
13869137-A-G 11748431-A-G DYZ17 ***
13869227-A-T 11748521-A-T DYZ17 ***
22364254-T-C 20202368-T-C DYZ19 ***
58976790-T-A 56830643-T-A ***
6224717-CA-C 6356676-CA-C IR3_Dst 12×A***
13677943-C-G 11522267-C-G DYZ17 ***
13804442-G-T 11683736-G-T DYZ17 ***
13815425-A-C 11694719-A-C DYZ17 ***
13844908-A-T 11724202-A-T DYZ17 ***
13850450-A-T 11729744-A-T DYZ17 ***
13850495-C-G 11729789-C-G FGC58341 DYZ17 ***
13868869-C-T 11748163-C-T BY91721 DYZ17 ***
13870053-T-C 11749347-T-C DYZ17 ***
22258667-G-A 20096781-G-A DYZ19 ***
22488101-C-A 20326215-C-A DYZ19 ***
58979548-C-A 56833401-C-A ***
13485747-G-C 11330071-G-C ***
13704312-T-A 11548636-T-A DYZ17 ***
13833625-A-T 11712919-A-T BY157692 DYZ17 ***
13838099-G-A 11717393-G-A DYZ17 ***
13860310-G-T 11739604-G-T DYZ17 ***
13868884-C-T 11748178-C-T BY156381 DYZ17 ***
13869517-C-A 11748811-C-A DYZ17 ***
28784516-A-G 26638369-A-G ***
13805370-T-A 11684664-T-A DYZ17 ***
13838257-G-A 11717551-G-A FT228786 DYZ17 ***
13868406-G-T 11747700-G-T FT50035 DYZ17 ***
13844873-T-A 11724167-T-A DYZ17 ***
13805184-C-A 11684478-C-A DYZ17 ***
58979637-C-T 56833490-C-T ***
13868416-G-A 11747710-G-A DYZ17 ***
13489625-A-C 11333949-A-C ***
58980988-T-A 56834841-T-A ***
13452663-C-T 11296987-C-T ***
13456370-C-A 11300694-C-A ***
13805192-G-A 11684486-G-A DYZ17 ***
13805210-T-C 11684504-T-C DYZ17 ***
13805220-T-G 11684514-T-G DYZ17 ***
13866902-C-A 11746196-C-A DYZ17 ***
13870048-A-T 11749342-A-T DYZ17 ***
13870051-G-A 11749345-G-A DYZ17 ***
13456190-AA-A,AT 11300514-AA-A,AT ***
13469154-G-C 11313478-G-C ***
13805211-G-A 11684505-G-A DYZ17 ***
13812196-G-T 11691490-G-T DYZ17 ***
13833547-T-G 11712841-T-G DYZ17 ***
13846584-G-C 11725878-G-C DYZ17 ***
28799103-T-G 26652956-T-G ***
28799108-T-G 26652961-T-G ***
28799856-T-A 26653709-T-A ***
58978267-C-T 56832120-C-T ***
13483228-C-G,T 11327552-C-G,T ***
22299833-G-A 20137947-G-A BY24436 DYZ19 ***
13851117-C-G 11730411-C-G DYZ17 ***
13851131-A-G 11730425-A-G DYZ17 ***
13866929-T-G 11746223-T-G DYZ17 ***
13868599-A-C,T 11747893-A-C,T DYZ17 ***
13869560-G-C 11748854-G-C DYZ17 ***
13869561-A-T 11748855-A-T DYZ17 ***
13869569-G-A 11748863-G-A DYZ17 ***
58819408-C-G 56771463-G-C ***
13489631-A-C 11333955-A-C ***
10035725-C-A 10198116-C-A ***
10035726-A-G 10198117-A-G ***
13454727-T-C 11299051-T-C ***
13483226-T-A 11327550-T-A ***
13496371-T-A 11340695-T-A Z1917 ***
13686892-G-C 11531216-G-C DYZ17 ***
13860319-G-C 11739613-G-C DYZ17 ***
27791851-T-G 25645704-T-G P1_Y2 ***
13674262-A-G 11518586-A-G DYZ17 4×GAATG***
13824908-C-T 11704202-C-T DYZ17 ***
58983155-C-T 56837008-C-T ***
13469187-G-T 11313511-G-T ***
13833621-G-C 11712915-G-C DYZ17 ***
28802739-C-G 26656592-C-G ***
13833591-A-G 11712885-A-G FT138091 DYZ17 ***
13848411-C-T 11727705-C-T FGC42925 DYZ17 ***
58983160-C-T 56837013-C-T ***
13483917-CG-C 11328241-CG-C ***
22269598-G-A 20107712-G-A DYZ19 ***
22258654-T-C 20096768-T-C DYZ19 ***
13866967-C-A 11746261-C-A DYZ17 ***
28802696-G-T 26656549-G-T ***
13686857-G-A 11531181-G-A DYZ17 ***
28802699-G-T 26656552-G-T ***
28802701-T-G 26656554-T-G ***
58978302-T-C 56832155-T-C ***
13680892-C-A,T 11525216-C-A,T DYZ17 ***
22269595-T-A 20107709-T-A DYZ19 ***
22269597-C-T 20107711-C-T DYZ19 ***
58819418-T-C,G 56771453-A-C,G ***
13469116-T-A 11313440-T-A ***
13850530-A-G 11729824-A-G DYZ17 ***
13869549-T-G 11748843-T-G DYZ17 ***
13680820-G-T 11525144-G-T DYZ17 ***
13680840-G-C 11525164-G-C DYZ17 ***
22446107-C-CT,T 20284221-C-CT,T DYZ19 ***
22303673-T-C 20141787-T-C DYZ19 ***
13674235-A-G 11518559-A-G DYZ17 ***
13674238-G-A 11518562-G-A DYZ17 ***
13674246-A-T 11518570-A-T DYZ17 ***
23482909-A-G 21321023-A-G BY145623 8×G***
13868290-C-CGAATGGAATG 11747584-C-CGAATGGAATG DYZ17 4×GAATG***
13833525-A-T 11712819-A-T DYZ17 ***
13833531-A-C 11712825-A-C DYZ17 ***
13856307-G-A 11735601-G-A DYZ17 ***
10037145-A-G 10199536-A-G ***
13676603-A-G 11520927-A-G DYZ17 ***
13484364-G-A 11328688-G-A ***
10037352-C-G 10199743-C-G ***
13139363-TCCATC-T 10628849-TCCATC-T ***
13143720-T-TATTCCATTCC 10633206-T-TATTCCATTCC 11×ATTCC***
13447221-CCGCTA-C,CCACTC 11291545-CCGCTA-C,CCACTC ***
13459442-C-T 11303766-C-T ***
13461139-G-T 11305463-G-T ***
13680754-T-C 11525078-T-C DYZ17 ***
13680769-T-G 11525093-T-G DYZ17 ***
13680853-A-C 11525177-A-C DYZ17 ***
13680868-A-T 11525192-A-T DYZ17 ***
13813986-C-A 11693280-C-A DYZ17 ***
13833496-C-G 11712790-C-G DYZ17 ***
13833589-A-T 11712883-A-T DYZ17 ***
13833634-C-A 11712928-C-A DYZ17 ***
13858500-G-A 11737794-G-A A15666 DYZ17 ***
13868428-A-C 11747722-A-C DYZ17 ***
13868430-G-C 11747724-G-C DYZ17 ***
13868431-G-A 11747725-G-A DYZ17 ***
13868435-G-A 11747729-G-A DYZ17 ***
13870035-C-CGAATGGAATGGACTG 11749329-C-CGAATGGAATGGACTG DYZ17 ***
19612191-AAT-A 17500311-AAT-A P5_Prx 9×AT***
22217527-C-G 20055641-C-G FGC22984 F13186 DYZ19 ***
22247434-A-T 20085548-A-T DYZ19 ***
22455366-G-T 20293480-G-T DYZ19 ***
22490739-G-C 20328853-G-C DYZ19 ***
22506730-A-G 20344844-A-G DYZ19 ***
23891147-G-GT 21729261-G-GT 15×T***
28787530-A-G 26641383-A-G ***
28802707-T-A 26656560-T-A ***
28805538-C-G 26659391-C-G ***
58819478-A-T 56771393-T-A ***
58819492-T-C 56771379-A-G ***
58819494-T-A 56771377-A-T ***
58978248-T-C 56832101-T-C ***
58978297-T-C 56832150-T-C ***
14730197-A-AAATACT 12618265-A-AAATACT 8×AATACT***
16651433-CTTTTT-C 14539553-CTTTTT-C 16×T***
17951172-GA-G 15839292-GA-G 9×A***
8462053-A-C 8594012-A-C ***
17302264-T-A 15190384-T-A ***
13454223-TTTCCA-A,T 11298547-TTTCCA-A,T 12×TTCCA***
14898419-C-T 12786485-C-T ***
13453613-CTTTTA-C,CATTCC 11297937-CTTTTA-C,CATTCC ***
13446672-CTCCAT-C,TTCCAT 11290996-CTCCAT-C,TTCCAT 5×TCCAT***
13680891-T-A,G 11525215-T-A,G DYZ17 ***
13686876-A-C,T 11531200-A-C,T DYZ17 ***
17196749-TAGAA-AAGAAAGGT,T 15084869-TAGAA-AAGAAAGGT,T 14×AGAA***
58976969-C-CTCCAG,G 56830822-C-CTCCAG,G ***
7145167-GAA-G 7277126-GAA-G 12×A***
17527428-A-G 15415548-A-G ZS10179 ***
19032673-TA-T 16920793-TA-T 10×A***
22186731-T-A 20024845-T-A ***
10831572-A-T ***
10831573-T-C ***
10831593-T-C ***
10831598-TTCC-T ***
10831613-T-G ***
11645891-C-A DYZ17 ***
17678646-TTG-T 15566766-TTG-T ***
18961597-C-A 16849717-C-A ***
14746166-G-A 12634235-G-A ***
9063859-CTTTT-C 9226250-CTTTT-C 16×T***
15422098-CAA-C,CA 13310218-CAA-C,CA 20×A***
7868975-GA-G,GAA 8000934-GA-G,GAA 16×A***
17928889-C-A 15817009-C-A ***
8843564-C-A 8975523-C-A ***
8462063-GCA-G 8594022-GCA-G ***
4244683-C-A 4376642-C-A ***
9013247-G-A 9175638-G-A ***
19128805-G-GAA 17016925-G-GAA 18×A***
13226617-C-A 11070941-C-A ***
10693377-AGCACC-A,ACTCCA ***
18253122-GATAT-G 16141242-GATAT-G 9×AT***
10946836-C-A ***
10903310-T-C ***
18869027-C-A 16757147-C-A ***
3790878-G-GTG,GTGTATA 3922837-G-GTG,GTGTATA 21×TA***
4254932-G-T 4386891-G-T ***
4325769-C-A 4457728-C-A ***
5412150-C-A 5544109-C-A ***
5609637-C-A 5741596-C-A ***
7371876-C-A 7503835-C-A ***
7383763-G-T 7515722-G-T ***
7383809-AC-A 7515768-AC-A ***
7766678-TAAA-T 7898637-TAAA-T 14×A***
8134737-C-A 8266696-C-A ***
8235478-G-T 8367437-G-T ***
9997052-C-A 10159443-C-A ***
10814447-C-A ***
10845667-C-A,G ***
10884621-C-A ***
10921553-TTACAC-T,TTCCAT ***
10973439-G-T ***
10999900-A-G ***
11030160-A-AA,AC ***
13585304-GG-G,GT 11429628-GG-G,GT ***
14331150-T-C,TC 12210444-T-C,TC ***
14753933-CAAA-C,CAAAA 12642002-CAAA-C,CAAAA 12×A***
14771666-TG-G,TT 12659735-TG-G,TT ***
15123653-C-A 13011740-C-A ***
15277114-CA-C 13165203-CA-C ***
15492683-GA-G 13380803-GA-G 10×A***
15718202-C-A 13606322-C-A FT154006 ***
16278952-TC-T 14167072-TC-T ***
16427667-G-T 14315787-G-T FT157363 ***
16705098-C-A 14593218-C-A ***
16833333-T-A 14721453-T-A ***
17448694-C-A 15336814-C-A ***
17951328-G-T 15839448-G-T ***
18890452-C-A 16778572-C-A A8863 ***
18961624-C-A 16849744-C-A ***
19102940-TA-T 16991060-TA-T ***
19251379-C-A 17139499-C-A ***
19477063-C-A 17365183-C-A ***
19528825-C-A 17416945-C-A ***
21091054-CAAAA-C 18929168-CAAAA-C 16×A***
21115921-G-A 18954035-G-A ***
21757593-CT-C 19595707-CT-C 10×T***
22868005-TA-T 20706119-TA-T ***
24435661-A-G 22289514-A-G ***
28496872-C-A 26350725-C-A ***
28763500-T-C 26617353-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.