Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	1kG HG02696
14656738-G-A	12544803-G-A		FGC848 S16261 F4960		Y	Y		+
22170011-C-T	20008125-C-T	FGC11182	FGC11160		Y			+
8405012-C-T	8536971-C-T		Y3939 F4765		Y	Y		+
17887937-C-T	15776057-C-T		Y3938 F5119		Y	Y		+
21802973-T-C	19641087-T-C		FT339402		Y	Y		+
7555904-G-A	7687863-G-A		Z43953		Y	Y		+
8272164-G-T	8404123-G-T		Y3929 F4756		Y	Y		+
19504809-G-A	17392929-G-A		YP4421		Y	Y		+
2655994-C-G	2787953-C-G		Z36062 F4531		Y	Y		+
2656126-C-T	2788085-C-T		Z36063		Y	Y		+
2676651-T-C	2808610-T-C		FT315351		Y			+
2865218-T-G	2997177-T-G		Y3910 F4544		Y	Y		+
2865747-G-A	2997706-G-A		FTA51513		Y	Y		+
3016449-G-A	3148408-G-A							+
3043010-G-A	3174969-G-A							+
3156637-A-T	3288596-A-T		Y17829 F4551					+
3221432-T-C	3353391-T-C		Y17832 F4553					+
3645385-G-A	3777344-G-A							+
3647799-T-C	3779758-T-C		Y18051					+
3854056-C-T	3986015-C-T		Y17281					+
3906369-G-C	4038328-G-C		FT705					+
3976005-G-A	4107964-G-A		FT734					+
4062421-A-G	4194380-A-G							+
4196035-G-A	4327994-G-A		FT800					+
4284178-G-A	4416137-G-A		Y17830					+
4592281-A-T	4724240-A-T		Y17835					+
4770477-G-C	4902436-G-C		Y14044 F4603					+
5090313-A-G	5222272-A-G							+
5134987-T-C	5266946-T-C		Y17837					+
5230529-C-A	5362488-C-A		FT1126					+
5253043-T-C	5385002-T-C		Y17838 F4618					+
5253856-G-A	5385815-G-A		Y17839 F4619					+
5511425-C-T	5643384-C-T							+
5748685-A-C	5880644-A-C		FT1305					+
5807775-A-C	5939734-A-C		FT1333					+
5908425-A-C	6040384-A-C		Y17841					+
5929978-A-G	6061937-A-G		FT1384					+
5983941-A-T	6115900-A-T		F4647					+
5985821-A-T	6117780-A-T		Y17842 F4648					+
6013328-A-G	6145287-A-G		FT1417					+
6044977-C-T	6176936-C-T							+
6052434-G-A	6184393-G-A							+
6068897-G-A	6200856-G-A		Y17843					+
6082954-T-G	6214913-T-G		Y17844 F4651					+
6278718-C-A	6410677-C-A		F4656	IR3_Dst				+
6363893-T-C	6495852-T-C		Y3928					+
6461807-C-A	6593766-C-A		Y17819 F4663					+
6577973-C-T	6709932-C-T		Y17831				4×TATT	+
6614553-T-C	6746512-T-C		F4669					+
6617134-T-C	6749093-T-C				Y			+
6636242-G-A	6768201-G-A		YP4385		Y	Y		+
6687691-C-G	6819650-C-G		Y17820 F4671		Y			+
6697302-A-G	6829261-A-G		Y3871 F4672		Y	Y		+
6726538-T-C	6858497-T-C		FT333520		Y			+
6726808-T-C	6858767-T-C				Y			+
6741170-G-C	6873129-G-C		Z36064		Y	Y		+
6847765-C-T	6979724-C-T		YP4386		Y	Y		+
6851494-A-G	6983453-A-G		L712		Y	Y		+
6891848-A-G	7023807-A-G		Y9307 F4679		Y	Y		+
6906716-A-G	7038675-A-G		YP4387		Y	Y		+
6950652-C-A	7082611-C-A		FT333618		Y	Y		+
7125715-G-A	7257674-G-A		YP4388		Y			+
7204316-G-A	7336275-G-A		YP4389		Y	Y		+
7275910-G-A	7407869-G-A				Y			+
7298618-C-T	7430577-C-T				Y			+
7362966-A-G	7494925-A-G		Y3931 F4698		Y			+
7386568-C-T	7518527-C-T		Y3911 F4704		Y	Y		+
7395181-G-A	7527140-G-A				Y	Y		+
7516740-T-C	7648699-T-C		FT333891		Y			+
7728899-C-A	7860858-C-A		Y3873 F4723		Y	Y		+
7791817-C-T	7923776-C-T		FT334053		Y	Y		+
7914469-A-C	8046428-A-C		Y3874 F4738		Y	Y		+
8016332-A-G	8148291-A-G		FT334186		Y	Y		+
8055808-T-C	8187767-T-C		FT334215		Y	Y		+
8078594-T-C	8210553-T-C		Y17435 F4747		Y			+
8090506-C-A	8222465-C-A		Y3875		Y	Y		+
8131261-G-A	8263220-G-A		YP4392		Y	Y		+
8161656-T-C	8293615-T-C		FT334285		Y	Y		+
8178296-T-C	8310255-T-C				Y			+
8185945-T-C	8317904-T-C		Y3876 F4751		Y	Y		+
8212493-G-A	8344452-G-A		Y3906 F4753		Y	Y		+
8306929-G-A	8438888-G-A		FT334374		Y	Y		+
8311413-G-A	8443372-G-A		YP4393		Y	Y		+
8406075-T-C	8538034-T-C		YP4394		Y	Y		+
8416937-C-A	8548896-C-A		FTA5854		Y	Y		+
8561979-G-C	8693938-G-C		FT334552		Y	Y		+
8567168-C-G	8699127-C-G		FT334555		Y	Y		+
8588050-A-G	8720009-A-G		FT334569		Y	Y		+
8660645-C-A	8792604-C-A		Y17821 F4784		Y			+
8672343-C-A	8804302-C-A		Y3930 F4785		Y	Y		+
8732533-G-A	8864492-G-A		FT1639		Y			+
8748077-G-A	8880036-G-A		Y3877 F4792		Y	Y		+
8749159-C-T	8881118-C-T		Y9308 F4793		Y	Y		+
8752778-T-C	8884737-T-C		Y3924 F4794		Y	Y		+
8896427-C-T	9028386-C-T		BY76748			Y		+
8905469-G-C	9037428-G-C		Y3878 F4801					+
8997899-G-A	9160290-G-A		Y3869 F4803			Y		+
9082260-A-G	9244651-A-G		Y3870 F4810			Y		+
9170882-C-A	9333273-C-A		Y3932		Y			+
9381034-A-T	9543425-A-T		Y3879 F4820		Y			+
9502710-A-T	9665101-A-T		BY198626					+
9745364-G-A	9907755-G-A		Y3933 F4830					+
9754513-A-G	9916904-A-G							+
9823794-C-T	9986185-C-T		Y3913 F4832		Y	Y		+
9941084-A-G	10103475-A-G				Y			+
9996773-G-A	10159164-G-A		BY936		Y			+
10000546-G-A	10162937-G-A				Y			+
13198003-G-A	11042327-G-A		FT440570					+
13278220-T-C	11122544-T-C							+
13382914-G-A	11227238-G-A							+
13465784-G-A	11310108-G-A		F4871					+
13541317-G-A	11385641-G-A		FT445048					+
13566481-G-T	11410805-G-T							+
13595550-C-A	11439874-C-A		F4876					+
13662841-G-A	11507165-G-A		F4888 BY981					+
13675847-C-T	11520171-C-T							+
13700788-G-A	11545112-G-A		BY54378					+
13839483-A-G	11718777-A-G		FTA51514					+
13840222-A-T	11719516-A-T		YP4396					+
13863007-T-A	11742301-T-A		YP806 F4906					+
13904690-G-A	11783984-G-A		Y17822 F4912		Y			+
13925170-T-A	11804464-T-A		FT1729		Y			+
14079438-C-T	11958732-C-T		YP4397		Y	Y		+
14088714-C-T	11968008-C-T		Y3914 F4922		Y			+
14141933-C-A	12021227-C-A		FT335297		Y	Y		+
14173963-G-A	12053257-G-A		YP4398 F4930		Y	Y		+
14232901-T-A	12112195-T-A		Y3881		Y	Y		+
14259083-T-A	12138377-T-A				Y			+
14269613-G-C	12148907-G-C		Y17823 F4939		Y			+
14323584-G-C	12202878-G-C		FT335474		Y	Y		+
14354969-G-A	12234264-G-A		Y3940 F4946		Y			+
14366831-C-T	12246126-C-T		Y3915 F4948		Y	Y		+
14409512-G-A	12288809-G-A		YP4399		Y	Y		+
14427993-C-T	12307268-C-T		YP4400		Y	Y		+
14719463-A-T	12607531-A-T		FT335728		Y			+
14721581-T-C	12609649-T-C		Y9310		Y	Y		+
14727945-T-C	12616013-T-C		YP4401		Y	Y		+
14759374-T-G	12647443-T-G		Y17824 F4968		Y			+
14778340-T-C	12666409-T-C		Y3882 F4969		Y	Y		+
14858829-G-A	12746895-G-A		FT335815		Y	Y		+
14893157-C-T	12781223-C-T		YP4402		Y	Y		+
14947222-G-T	12835296-G-T		YP4403		Y	Y		+
14964363-C-G	12852438-C-G		Y17825 F4980		Y			+
14964742-C-T	12852817-C-T		FT335879		Y			+
15083064-C-A	12971154-C-A		FT335945		Y			+
15083690-C-G	12971780-C-G		Y19342		Y			+
15245897-G-C	13133983-G-C				Y			+
15378600-T-C	13266720-T-C		FT1872		Y			+
15502461-T-C	13390581-T-C		Y3884		Y	Y		+
15543722-A-T	13431842-A-T		YP4404		Y	Y		+
15673284-G-T	13561404-G-T				Y			+
15723595-C-T	13611715-C-T		Y3886 F5010		Y	Y		+
15743663-C-T	13631783-C-T		Y14124 F5012		Y			+
15749724-A-G	13637844-A-G		Y3916		Y	Y		+
15790739-A-G	13678859-A-G		Y3917 F5016		Y			+
15823372-A-G	13711492-A-G		Y3887 F5018		Y	Y		+
16004972-G-A	13893092-G-A				Y			+
16259152-A-C	14147272-A-C		FTA6002		Y	Y		+
16324075-A-G	14212195-A-G		YP6151		Y	Y		+
16414053-G-A	14302173-G-A		YP4405		Y	Y		+
16468681-A-C	14356801-A-C		FT1935		Y			+
16502308-C-T	14390428-C-T		YP6152		Y			+
16645658-G-T	14533778-G-T		FT1952		Y	Y		+
16664003-G-A	14552123-G-A		FT102142		Y			+
16674737-C-T	14562857-C-T		Y17845 F5057		Y			+
16783169-G-A	14671289-G-A		Y3935 F5063		Y	Y		+
16793771-G-A	14681891-G-A		YP4407 F5064		Y	Y		+
16940296-C-T	14828416-C-T		FT337118		Y	Y		+
16973633-G-A	14861753-G-A		FT337137		Y			+
17075930-T-C	14964050-T-C		Y3918 F5076		Y	Y		+
17202507-G-A	15090627-G-A		Y3890 F5081		Y	Y		+
17460873-G-A	15348993-G-A		Y3905 SK1929 F5099		Y	Y		+
17486265-C-G	15374385-C-G		FT337468		Y	Y		+
17492768-G-A	15380888-G-A		YP4409		Y	Y		+
17494682-G-T	15382802-G-T		F5101		Y	Y		+
17499297-A-G	15387417-A-G		Y17846 F5102		Y			+
17514236-C-T	15402356-C-T		YP4410 F5103		Y	Y		+
17530748-C-G	15418868-C-G		FT337506		Y	Y		+
17684528-C-T	15572648-C-T		Y14125		Y	Y		+
17776273-A-G	15664393-A-G		Y17847		Y			+
17978923-C-A	15867043-C-A		YP4412		Y			+
18029746-A-T	15917866-A-T		YP4413		Y			+
18063761-C-T	15951881-C-T		YP4414 F5131		Y	Y		+
18075699-G-A	15963819-G-A		Y3867 FGC9826		Y	Y		+
18084396-C-T	15972516-C-T	BY22369	Y3891 SK1931 F5133		Y	Y		+
18088906-G-T	15977026-G-T		FT279600		Y			+
18155402-C-T	16043522-C-T		Y3919 F5140		Y	Y		+
18163044-G-A	16051164-G-A		Y3892 F5143		Y	Y		+
18181367-T-C	16069487-T-C		FT337965		Y	Y		+
18286118-C-T	16174238-C-T		Y3936 F5150	P6_Prx				+
18426490-A-G	16314610-A-G		YP4415	P6_Gap				+
18564180-C-T	16452300-C-T		YP4416 F5155		Y	Y		+
18716026-G-A	16604146-G-A				Y	Y		+
18769655-T-G	16657775-T-G		Y3894		Y	Y		+
18795383-G-C	16683503-G-C		FT338265		Y			+
18833458-A-C	16721578-A-C		YP4418		Y	Y		+
18833593-T-A	16721713-T-A		YP4419		Y	Y		+
18903792-C-T	16791912-C-T		Y3895		Y	Y		+
18907907-T-C	16796027-T-C		Y3937 F5169		Y	Y		+
18989251-C-T	16877371-C-T		Y17848 F5174		Y			+
19049084-C-G	16937204-C-G		FT338421		Y	Y		+
19062653-G-A	16950773-G-A		FT233212		Y			+
19098999-A-G	16987119-A-G		FTA6140		Y			+
19187974-C-T	17076094-C-T		YP4420		Y			+
19253410-T-C	17141530-T-C		Y17826 F5190		Y			+
19274292-C-G	17162412-C-G		FT338616		Y	Y		+
19287122-C-A	17175242-C-A		FT338621		Y	Y		+
19430508-C-T	17318628-C-T		FT338744		Y	Y		+
19518726-CAT-C	17406846-CAT-C							+
19520648-G-A	17408768-G-A		Y3920 F5206		Y	Y		+
21058309-A-C	18896423-A-C				Y			+
21083306-A-G	18921420-A-G		L714		Y	Y		+
21098767-T-C	18936881-T-C		Y3897 F5212		Y	Y		+
21145298-G-A	18983412-G-A				Y	Y		+
21180662-C-A	19018776-C-A		Y3898 F5215		Y	Y		+
21188402-C-T	19026516-C-T		Y3899 F5216		Y	Y		+
21227470-C-T	19065584-C-T		Y3921 F5220		Y	Y		+
21355653-C-T	19193767-C-T		YP4422		Y	Y		+
21409303-G-A	19247417-G-A		Y3922		Y			+
21411589-A-G	19249703-A-G		FT339151		Y	Y		+
21432753-C-T	19270867-C-T		Y3901 F5235		Y	Y		+
21447397-T-C	19285511-T-C		Y3902 F5237		Y	Y		+
21457543-C-A	19295657-C-A		Y3903 F5238		Y			+
21463784-G-A	19301898-G-A		YP4423 F5240		Y	Y		+
21527531-A-G	19365645-A-G		FT339214		Y	Y		+
21547282-C-A	19385396-C-A		YP4424		Y	Y		+
21705687-T-A	19543801-T-A		Y3904 F5250		Y	Y		+
21831068-C-T	19669182-C-T				Y			+
21858024-T-C	19696138-T-C		YP4425		Y	Y		+
21864916-T-C	19703030-T-C		FT339457		Y	Y		+
21866664-G-C	19704778-G-C		M25		Y	Y		+
21889818-G-T	19727932-G-T		M143		Y	Y		+
21925646-G-C	19763760-G-C		FT339501		Y	Y		+
21940672-T-C	19778786-T-C		Y17827 F5261		Y			+
21979284-G-A	19817398-G-A		Y3923 F5263		Y	Y		+
22062186-G-A	19900300-G-A		YP4426		Y	Y		+
22076050-A-G	19914164-A-G		FT339591		Y	Y		+
22084094-C-G	19922208-C-G		YP4427 F5277		Y	Y		+
22111224-G-A	19949338-G-A		YP4428 F5278		Y	Y		+
22220261-T-A	20058375-T-A			DYZ19				+
22222634-G-A	20060748-G-A			DYZ19				+
22427827-G-T	20265941-G-T			DYZ19				+
22441915-T-A	20280029-T-A			DYZ19				+
22444127-C-T	20282241-C-T			DYZ19				+
22444816-T-A	20282930-T-A		BY219482	DYZ19				+
22465496-G-C	20303610-G-C		F5318	DYZ19				+
22469228-G-T	20307342-G-T		F5324	DYZ19				+
22469562-T-C	20307676-T-C		YP848 F5325	DYZ19				+
22514124-A-C	20352238-A-C		L716		Y			+
22564411-A-T	20402525-A-T		YP4429		Y	Y		+
22569010-C-T	20407124-C-T		YP850 F5345		Y	Y		+
22586775-T-C	20424889-T-C		YP4430 F5347		Y	Y		+
22591908-C-A	20430022-C-A		YP4431		Y	Y		+
22592344-A-G	20430458-A-G		FT339760		Y			+
22645113-C-A	20483227-C-A		YP4432		Y	Y		+
22674725-A-T	20512839-A-T		Y3868 F5354		Y	Y		+
22951084-C-T	20789198-C-T		BY199641		Y	Y		+
22952345-G-A	20790459-G-A		Y3908 F5374		Y	Y		+
22982376-T-A	20820490-T-A		YP6181		Y			+
22988675-G-A	20826789-G-A		FT340008		Y			+
23107084-C-A	20945198-C-A		FT340114		Y			+
23122772-C-A	20960886-C-A		Y3925 F5384		Y	Y		+
23148556-G-A	20986670-G-A		YP4433 F5386		Y	Y		+
23234212-C-G	21072326-C-G		YP4434 F5391		Y			+
23245750-T-C	21083864-T-C		Y3926 F5392		Y	Y		+
23321858-G-A	21159972-G-A				Y	Y		+
23403987-A-G	21242101-A-G		Y3909 F5397		Y	Y		+
23435658-C-T	21273772-C-T		YP4435		Y	Y		+
23442369-G-T	21280483-G-T		FT340332		Y			+
23471369-C-T	21309483-C-T		FT340347		Y	Y		+
23646621-T-C	21484735-T-C		YP4436		Y			+
23804124-C-G	21642238-C-G		YP4437			Y		+
23825499-C-G	21663613-C-G		FT340517			Y		+
23841990-T-C	21680104-T-C		FT340524			Y		+
24376891-G-T	22230744-G-T		YP4438 F5424			Y		+
28510627-T-C	26364480-T-C		YP4439			Y		+
28521020-A-G	26374873-A-G		Y3927			Y		+
28631473-A-G	26485326-A-G		Y17828 F5456			Y		+
28808164-C-T	26662017-C-T		BY227434					+

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

1k Genomes

Tree Position

Unique Mutations