Coffey
FTDNA: 209475, BigY2: 209475MDKA Birth: Ireland 1775
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 209475 | BigY2 209475 | Manual Edits |
---|---|---|---|---|---|---|---|---|---|---|
6113872-A-C | 6245831-A-C | A* | ||||||||
25960601-A-C | 23814454-A-C | P1_Y1 | A* | |||||||
8060031-G-T | 8191990-G-T | Y46776 | Y | Y | + | + | ||||
10040561-A-G | 10202952-A-G | BY83369 | *** | + | ||||||
17368477-G-A | 15256597-G-A | FT181051 | Y | Y | + | + | ||||
19024313-C-T | 16912433-C-T | Y55231 | Y | Y | + | + | ||||
22103148-A-G | 19941262-A-G | BY137643 | Y | Y | + | + | ||||
22463252-T-A | 20301366-T-A | BY189469 | DYZ19 | + | + | |||||
6734706-C-G | 6866665-C-G | ** | ||||||||
13801504-C-G | 11680798-C-G | ** | ||||||||
24575904-T-C | 22429757-T-C | P3_t2 | ** | |||||||
14639063-TC-T | 12527132-TC-T | ** | ||||||||
17071095-GGAAA-G | 14959215-GGAAA-G | ** | ||||||||
17385445-T-G | 15273565-T-G | ** | ||||||||
17527400-G-A | 15415520-G-A | ** | ||||||||
2915046-C-T | 3047005-C-T | FT425977 | ** | |||||||
4907995-G-A | 5039954-G-A | ** | ||||||||
4908038-C-T | 5039997-C-T | Z18652 FGC23610 | ** | |||||||
9013170-G-A | 9175561-G-A | A18841 | ** | |||||||
9013182-A-C | 9175573-A-C | A18842 | ** | |||||||
14213866-A-G | 12093160-A-G | ** | ||||||||
16059812-C-A | 13947932-C-A | ** | ||||||||
16675178-A-G | 14563298-A-G | ** | ** | |||||||
27226451-T-G | 25080304-T-G | P1_g3 | ** | |||||||
3688939-C-A | 3820898-C-A | ** | ||||||||
10022287-C-T | 10184678-C-T | BY83087 | ** | |||||||
2750839-CAAAAA-C | 2882798-CAAAAA-C | 16×A | ** | |||||||
5785693-ATCCTGC-A | 5917652-ATCCTGC-A | ** | ||||||||
13878588-G-GAA | 11757882-G-GAA | 11×A | ** | |||||||
13489511-G-T | 11333835-G-T | ** | ||||||||
16938218-CTTTTT-C | 14826338-CTTTTT-C | 19×T | ** | |||||||
11038102-C-A | ** | |||||||||
14424045-C-. | 12303320-T-C | ** | ||||||||
10677522-A-G | ** | |||||||||
19271549-TAAA-T | 17159669-TAAA-T | 14×A | ** | |||||||
14471813-C-A | 12351082-C-A | ** | ||||||||
2651913-A-G | 2783872-A-G | ** | ||||||||
17886304-C-A | 15774424-C-A | ** | ||||||||
10825653-G-A | ** | |||||||||
16015602-A-AT | 13903722-A-AT | 9×T | ** | |||||||
7996819-C-A | 8128778-C-A | ** | ||||||||
24421037-G-A | 22274890-G-A | ** | ||||||||
9040277-C-A | 9202668-C-A | ** | ||||||||
16938194-C-T | 14826314-C-T | ** | ||||||||
7150747-C-A | 7282706-C-A | ** | ||||||||
8325689-T-C | 8457648-T-C | ** | ||||||||
19258978-C-A | 17147098-C-A | ** | ||||||||
13488897-T-C | 11333221-T-C | ** | ||||||||
26314734-C-A | 24168587-C-A | P1_Y1 | ** | |||||||
28478897-C-A | 26332750-C-A | ** | ||||||||
26222512-T-C | 24076365-T-C | P1_Y1 | ** | |||||||
15701010-C-A | 13589130-C-A | ** | ||||||||
28704023-C-A | 26557876-C-A | ** | ||||||||
20700682-CA-C | 18538796-CA-C | P4_Prx | ** | |||||||
6756907-TCAAA-T | 6888866-TCAAA-T | ** | ||||||||
23137155-C-A | 20975269-C-A | ** | ||||||||
7099999-C-A | 7231958-C-A | ** | ||||||||
10760016-A-C | ** | |||||||||
10794312-T-C | ** | |||||||||
3923257-C-A | 4055216-C-A | ** | ||||||||
10889269-ATT-A | ** | |||||||||
10889292-C-A | ** | |||||||||
10968709-A-T | ** | |||||||||
19507065-C-A | 17395185-C-A | ** | ||||||||
15491889-CTATA-C | 13380009-CTATA-C | 9×TA | ** | |||||||
13466101-G-A | 11310425-G-A | ** | ||||||||
27862603-AAAGG-A | 25716456-AAAGG-A | P1_Y2 | ** | |||||||
10985167-T-C | ** | |||||||||
10985189-T-A | ** | |||||||||
10985219-C-CCATCT | ** | |||||||||
21382458-C-A | 19220572-C-A | ** | ||||||||
8027811-A-C | 8159770-A-C | ** | ||||||||
9077181-G-T | 9239572-G-T | ** | ||||||||
10653048-C-T | BY31705 | ** | ||||||||
28641155-C-A | 26495008-C-A | ** | ||||||||
14886392-T-C | 12774458-T-C | ** | ||||||||
10889274-A-ACAC | ** | |||||||||
10889280-T-C | ** | |||||||||
16506742-G-A | 14394862-G-A | ** | ||||||||
10999904-C-GTGTTG | ** | |||||||||
10999918-C-A | ** | |||||||||
10999928-C-A | ** | |||||||||
10999930-T-A | ** | |||||||||
15677803-C-A | 13565923-C-A | ** | ||||||||
10985208-C-CCTTTT | ** | |||||||||
17843110-G-T | 15731230-G-T | ** | ||||||||
6328800-C-A | 6460759-C-A | IR3_Dst | ** | |||||||
10759954-C-T | ** | |||||||||
15971593-C-A | 13859713-C-A | ** | ||||||||
10861196-C-A | ** | |||||||||
4925220-C-A | 5057179-C-A | ** | ||||||||
18738111-TTTC-T | 16626231-TTTC-T | ** | ||||||||
7310571-CTTT-C | 7442530-CTTT-C | 21×T | ** | |||||||
17385437-T-A | 15273557-T-A | ** | ||||||||
21118736-C-A | 18956850-C-A | ** | ||||||||
24875408-C-A | 22729261-C-A | g1 | ** | |||||||
28698748-C-A | 26552601-C-A | ** | ||||||||
19506939-CTT-C | 17395059-CTT-C | 11×T | ** | |||||||
21318352-C-A | 19156466-C-A | ** | ||||||||
23825046-TTATA-T | 21663160-TTATA-T | 9×TA | ** | |||||||
6915835-C-T | 7047794-C-T | ** | ||||||||
16040967-ATTT-A | 13929087-ATTT-A | 14×T | ** | |||||||
7154648-C-A | 7286607-C-A | ** | ||||||||
17455766-C-A | 15343886-C-A | ** | ||||||||
16530989-C-A | 14419109-C-A | ** | ||||||||
3640456-C-A | 3772415-C-A | ** | ||||||||
10653469-A-G | ** | |||||||||
6694799-C-A | 6826758-C-A | ** | ||||||||
24280901-A-G | 22134754-A-G | P3_t1 | ** | |||||||
14714706-C-A | 12602773-C-A | ** | ||||||||
17629773-T-C | 15517893-T-C | ** | ||||||||
23262520-C-A | 21100634-C-A | ** | ||||||||
6092079-C-A | 6224038-C-A | ** | ||||||||
10759990-C-A | ** | |||||||||
11655586-C-A | ** | |||||||||
19829300-T-C | 17717420-T-C | P5_Prx | ** | |||||||
4968279-C-A | 5100238-C-A | ** | ||||||||
10968723-G-T | ** | |||||||||
22965704-C-A | 20803818-C-A | ** | ||||||||
28815227-A-T | 26669080-A-T | ** | ||||||||
5221164-C-A | 5353123-C-A | ** | ||||||||
23056314-C-A | 20894428-C-A | ** | ||||||||
10898235-T-C | ** | |||||||||
6790283-C-A | 6922242-C-A | ** | ||||||||
21189612-C-A | 19027726-C-A | ** | ||||||||
8671390-C-A | 8803349-C-A | ** | ||||||||
10749381-C-A | ** | |||||||||
19062308-C-A | 16950428-C-A | ** | ||||||||
14021323-C-A | 11900617-C-A | ** | ||||||||
10945198-C-T | ** | |||||||||
13218796-C-A | 11063120-C-A | ** | ||||||||
17571971-C-A | 15460091-C-A | ** | ||||||||
7169993-C-A | 7301952-C-A | ** | ||||||||
14784927-C-A | 12672997-C-A | ** | ||||||||
14960177-C-A | 12848252-C-A | ** | ||||||||
2746040-C-T | 2877999-C-T | ** | ||||||||
7918528-C-A | 8050487-C-A | ** | ||||||||
21082034-C-A | 18920148-C-A | ** | ||||||||
4908005-C-T | 5039964-C-T | ** | ||||||||
19448428-C-A | 17336548-C-A | ** | ||||||||
10776477-C-G | ** | |||||||||
21949078-C-A | 19787192-C-A | ** | ||||||||
19066136-C-A | 16954256-C-A | ** | ||||||||
16351901-G-T | 14240021-G-T | ** | ||||||||
10756539-C-A | ** | |||||||||
10999893-CC-G | ** | |||||||||
17306351-C-A | 15194471-C-A | ** | ||||||||
10760001-A-ATACCG | ** | |||||||||
22316344-G-A | 20154458-G-A | DYZ19 | ** | |||||||
10655831-G-T | ** | |||||||||
13553279-C-A | 11397603-C-A | ** | ||||||||
4527404-C-A | 4659363-C-A | ** | ||||||||
5577389-C-A | 5709348-C-A | ** | ||||||||
5755219-C-A | 5887178-C-A | ** | ||||||||
10831029-T-C | ** | |||||||||
16904607-C-A | 14792727-C-A | ** | ||||||||
22598745-C-CAAA | 20436859-C-CAAA | 15×A | ** | |||||||
11018095-C-A | ** | |||||||||
28532096-C-A | 26385949-C-A | ** | ||||||||
24961240-C-A | 22815093-C-A | g1 | ** | |||||||
9997238-C-A | 10159629-C-A | ** | ||||||||
28006377-C-CAA | 25860230-C-CAA | P1_Y2 | ** | |||||||
5904892-C-A | 6036851-C-A | ** | ||||||||
18972861-C-A | 16860981-C-A | ** | ||||||||
16045454-C-A | 13933574-C-A | ** | ||||||||
17374757-G-T | 15262877-G-T | ** | ||||||||
10968666-A-G | ** | |||||||||
10968677-T-A | ** | |||||||||
10968693-C-T | ** | |||||||||
10968698-C-T | ** | |||||||||
10968707-C-A | ** | |||||||||
10968712-C-G | FGC81102 | ** | ||||||||
10968755-C-T | ** | |||||||||
17865360-C-A | 15753480-C-A | ** | ||||||||
8290965-C-A | 8422924-C-A | ** | ||||||||
2814859-C-G | 2946818-C-G | ** | ||||||||
10937373-T-C | ** | |||||||||
10937399-C-T | ** | |||||||||
10937400-C-A | ** | |||||||||
20404445-CAAAAAAAAAAAA-C | 18242559-CAAAAAAAAAAAA-C | P5_Dst | 29×A | ** | ||||||
7759097-C-A | 7891056-C-A | ** | ||||||||
3253095-C-A | 3385054-C-A | ** | ||||||||
22167216-A-T | 20005330-A-T | ** | ||||||||
7106353-C-A | 7238312-C-A | ** | ||||||||
5627821-C-A | 5759780-C-A | ** | ||||||||
56823144-G-T | ** | |||||||||
18086574-C-A | 15974694-C-A | ** | ||||||||
15987374-C-A | 13875494-C-A | ** | ||||||||
6465002-C-A | 6596961-C-A | ** | ||||||||
13482159-T-A | 11326483-T-A | ** | ||||||||
13604313-A-G | 11448637-A-G | ** | ||||||||
13804017-A-T | 11683311-A-T | ** | ||||||||
4907994-T-C | 5039953-T-C | ** | ||||||||
5011092-C-A | 5143051-C-A | ** | ||||||||
17440407-C-A | 15328527-C-A | ** | ||||||||
17053323-C-A | 14941443-C-A | ** | ||||||||
10776479-T-G | ** | |||||||||
9996203-A-T | 10158594-A-T | ** | ||||||||
10757149-C-A | FT429857 | ** | ||||||||
2814851-CA-C | 2946810-CA-C | ** | ||||||||
14948953-C-A | 12837027-C-A | ** | ||||||||
19429784-C-T | 17317904-C-T | ** | ||||||||
9941422-C-A | 10103813-C-A | ** | ||||||||
15491904-TATAG-T | 13380024-TATAG-T | ** | ||||||||
10794757-G-A | ** | |||||||||
7990512-C-A | 8122471-C-A | ** | ||||||||
22963709-C-A | 20801823-C-A | ** | ||||||||
10969103-C-A | ** | |||||||||
2665695-A-G | 2797654-A-G | ** | ||||||||
2758289-C-A | 2890248-C-A | 8×A | ** | |||||||
2814868-C-T | 2946827-C-T | ** | ||||||||
2814869-A-G | 2946828-A-G | ** | ||||||||
2814877-TAAAAAAAA-T | 2946836-TAAAAAAAA-T | 14×A | ** | |||||||
2814894-CGAA-C | 2946853-CGAA-C | ** | ||||||||
2960472-C-A | 3092431-C-A | ** | ||||||||
3092809-C-A | 3224768-C-A | ** | ||||||||
3165014-G-A | 3296973-G-A | 13×T | ** | |||||||
3225487-G-T | 3357446-G-T | ** | ||||||||
3493779-G-T | 3625738-G-T | ** | ||||||||
3546896-TA-T | 3678855-TA-T | ** | ||||||||
3849356-G-A | 3981315-G-A | ** | ||||||||
3854075-C-A | 3986034-C-A | ** | ||||||||
3965360-C-A | 4097319-C-A | ** | ||||||||
4142256-G-T | 4274215-G-T | ** | ||||||||
4142282-C-T | 4274241-C-T | ** | ||||||||
4171652-C-A | 4303611-C-A | ** | ||||||||
4212743-C-A | 4344702-C-A | ** | ||||||||
4257812-G-T | 4389771-G-T | ** | ||||||||
4460055-C-A | 4592014-C-A | ** | ||||||||
4460089-C-A | 4592048-C-A | ** | ||||||||
4585370-C-A | 4717329-C-A | ** | ||||||||
4626239-T-C | 4758198-T-C | ** | ||||||||
4629191-G-T | 4761150-G-T | ** | ||||||||
4666040-C-A | 4797999-C-A | ** | ||||||||
4907944-T-C | 5039903-T-C | ** | ||||||||
4907949-C-T | 5039908-C-T | ** | ||||||||
4907950-C-G | 5039909-C-G | ** | ||||||||
4907951-A-G | 5039910-A-G | ** | ||||||||
4907953-T-A | 5039912-T-A | ** | ||||||||
4907960-T-C | 5039919-T-C | ** | ||||||||
4907962-A-G | 5039921-A-G | ** | ||||||||
4907975-A-G | 5039934-A-G | ** | ||||||||
4907977-A-G | 5039936-A-G | ** | ||||||||
4907979-C-T | 5039938-C-T | ** | ||||||||
4908020-A-C | 5039979-A-C | ** | ||||||||
4908022-A-C | 5039981-A-C | ** | ||||||||
4908022-AAT-A | 5039981-AAT-A | ** | ||||||||
4908026-C-CA | 5039985-C-CA | ** | ||||||||
4937068-A-G | 5069027-A-G | ** | ||||||||
5000419-C-T | 5132378-C-T | ** | ||||||||
5055303-T-G | 5187262-T-G | ** | ||||||||
5167934-G-T | 5299893-G-T | ** | ||||||||
5170424-C-A | 5302383-C-A | ** | ||||||||
5200576-G-T | 5332535-G-T | ** | ||||||||
5214526-G-GTT | 5346485-G-GTT | 8×T | ** | |||||||
5443205-T-C | 5575164-T-C | ** | ||||||||
5534779-C-A | 5666738-C-A | ** | ||||||||
5709752-T-G | 5841711-T-G | ** | ||||||||
6242850-G-T | 6374809-G-T | IR3_Dst | ** | |||||||
6279334-T-A | 6411293-T-A | IR3_Dst | ** | |||||||
6402660-C-A | 6534619-C-A | ** | ||||||||
6414577-G-A | 6546536-G-A | ** | ||||||||
6435910-A-T | 6567869-A-T | ** | ||||||||
6474692-A-T | 6606651-A-T | ** | ||||||||
6619727-C-A | 6751686-C-A | ** | ||||||||
6730391-G-A | 6862350-G-A | ** | ||||||||
6867816-C-A | 6999775-C-A | ** | ||||||||
6901292-C-A | 7033251-C-A | ** | ||||||||
6984013-A-T | 7115972-A-T | ** | ||||||||
6996767-T-G | 7128726-T-G | ** | ||||||||
7002362-T-C | 7134321-T-C | ** | ||||||||
7029896-C-A | 7161855-C-A | ** | ||||||||
7102247-C-A | 7234206-C-A | ** | ||||||||
7148013-C-A | 7279972-C-A | 17×T | ** | |||||||
7164203-C-A | 7296162-C-A | ** | ||||||||
7210069-C-A | 7342028-C-A | ** | ||||||||
7221682-C-A | 7353641-C-A | ** | ||||||||
7258703-T-C | 7390662-T-C | ** | ||||||||
7258705-A-G | 7390664-A-G | ** | ||||||||
7258716-T-C | 7390675-T-C | ** | ||||||||
7258721-G-C | 7390680-G-C | ** | ||||||||
7342276-C-A | 7474235-C-A | ** | ||||||||
7342279-C-A | 7474238-C-A | ** | ||||||||
7348728-T-C | 7480687-T-C | ** | ||||||||
7470612-T-C | 7602571-T-C | IR1_L | ** | |||||||
7664304-T-A | 7796263-T-A | ** | ||||||||
7709977-G-T | 7841936-G-T | ** | ||||||||
7713211-G-A | 7845170-G-A | ** | ||||||||
7853232-C-A | 7985191-C-A | ** | ||||||||
7923732-T-A | 8055691-T-A | ** | ||||||||
7990428-C-A | 8122387-C-A | ** | ||||||||
8073964-C-A | 8205923-C-A | ** | ||||||||
8296779-C-A | 8428738-C-A | ** | ||||||||
8697953-C-A | 8829912-C-A | ** | ||||||||
8730993-C-T | 8862952-C-T | ** | ||||||||
8731069-C-A | 8863028-C-A | ** | ||||||||
8731276-C-A | 8863235-C-A | ** | ||||||||
9013150-C-A | 9175541-C-A | ** | ||||||||
9013151-G-T | 9175542-G-T | ** | ||||||||
9013156-G-A | 9175547-G-A | ** | ||||||||
9013173-G-T | 9175564-G-T | ** | ||||||||
9076099-T-C | 9238490-T-C | ** | ||||||||
9173094-T-G | 9335485-T-G | ** | ||||||||
9173099-C-T | 9335490-C-T | ** | ||||||||
9173104-A-C | 9335495-A-C | ** | ||||||||
9173109-C-T | 9335500-C-T | ** | ||||||||
9198270-G-A | 9360661-G-A | ** | ||||||||
9441220-C-A | 9603611-C-A | ** | ||||||||
9515057-T-G | 9677448-T-G | ** | ||||||||
9934957-C-A | 10097348-C-A | ** | ||||||||
10013855-C-A | 10176246-C-A | ** | ||||||||
10621949-G-A | Y65461 | ** | ||||||||
10657850-T-C | ** | |||||||||
10678195-T-A | ** | |||||||||
10694103-C-G | ** | |||||||||
10752593-C-A | ** | |||||||||
10776062-TTCCGCTCCAC-T | ** | |||||||||
10776092-C-CTATAT | ** | |||||||||
10776487-T-TA | ** | |||||||||
10776492-CA-C | ** | |||||||||
10776500-T-TCGAGC | ** | |||||||||
10824624-A-G | ** | |||||||||
10825559-C-A | ** | |||||||||
10825649-T-C | ** | |||||||||
10825654-T-C | ** | |||||||||
10828690-C-T | ** | |||||||||
10833904-T-C | ** | |||||||||
10844290-C-G | ** | |||||||||
10844309-T-G | ** | |||||||||
10844313-A-C | ** | |||||||||
10844314-G-A | ** | |||||||||
10864383-C-A | ** | |||||||||
10868984-A-T | ** | |||||||||
10875610-C-A | ** | |||||||||
10889275-T-TCCGCTCTAC | ** | |||||||||
10898217-C-A | ** | |||||||||
10902328-C-A | ** | |||||||||
10933164-C-A | ** | |||||||||
10945213-C-CTCCACTCTAT | ** | |||||||||
10955573-T-C | ** | |||||||||
10971960-T-C | ** | |||||||||
10985029-C-A | ** | |||||||||
10999917-T-A | ** | |||||||||
11005679-A-G | ** | |||||||||
11015051-A-G | ** | |||||||||
11018093-C-A | ** | |||||||||
11018591-TG-T | ** | |||||||||
13225695-C-A | 11070019-C-A | ** | ||||||||
13225823-G-A | 11070147-G-A | ** | ||||||||
13250253-C-A | 11094577-C-A | ** | ||||||||
13464069-C-T | 11308393-C-T | ** | ||||||||
13470860-A-G | 11315184-A-G | ** | ||||||||
13487501-C-A | 11331825-C-A | ** | ||||||||
13488074-C-A | 11332398-C-A | ** | ||||||||
13496690-G-T | 11341014-G-T | ** | ||||||||
13556994-C-A | 11401318-C-A | ** | ||||||||
13630843-C-A | 11475167-C-A | ** | ||||||||
11644280-A-T | ** | |||||||||
11669775-G-T | ** | |||||||||
13801492-T-C | 11680786-T-C | ** | ||||||||
13801518-A-G | 11680812-A-G | ** | ||||||||
14031965-C-T | 11911259-C-T | FT126626 | ** | |||||||
14118377-G-A | 11997671-G-A | ** | ||||||||
14124049-TCA-T | 12003343-TCA-T | ** | ||||||||
14168137-T-C | 12047431-T-C | ** | ||||||||
14183165-T-C | 12062459-T-C | ** | ||||||||
14255172-C-T | 12134466-C-T | ** | ||||||||
14289387-G-A | 12168681-G-A | ** | ||||||||
14339402-C-A | 12218697-C-A | ** | ||||||||
14420259-A-G | 12299534-A-G | ** | ||||||||
14420276-C-A | 12299551-C-A | ** | ||||||||
14456189-C-A | 12335462-C-A | ** | ||||||||
14458237-G-A | 12337510-G-A | ** | ||||||||
14464247-C-T | 12343520-C-T | ** | ||||||||
14468242-C-A | 12347511-C-A | ** | ||||||||
14490356-G-T | 12369625-G-T | ** | ||||||||
14493548-C-A | 12381745-C-A | ** | ||||||||
14499673-C-T | 12387878-C-T | ** | ||||||||
14500102-C-A | 12388307-C-A | ** | ||||||||
14537895-G-A | 12426096-G-A | ** | ||||||||
14561407-A-G | 12449608-A-G | ** | ||||||||
14585694-A-G | 12473894-A-G | FTB75994 | ** | |||||||
14598496-C-A | 12486696-C-A | ** | ||||||||
14660622-T-C | 12548687-T-C | ** | ||||||||
14698465-A-AG | 12586531-A-AG | ** | ||||||||
15178670-C-A | 13066756-C-A | ** | ||||||||
15334502-G-A | 13222620-G-A | ** | ||||||||
15334889-A-G | 13223007-A-G | ** | ||||||||
15430668-A-G | 13318788-A-G | ** | ||||||||
15495138-A-C | 13383258-A-C | ** | ||||||||
15685284-A-T | 13573404-A-T | ** | ||||||||
15733659-A-T | 13621779-A-T | ** | ||||||||
15866761-C-A | 13754881-C-A | ** | ||||||||
15909274-A-G | 13797394-A-G | ** | ||||||||
15943071-A-G | 13831191-A-G | ** | ||||||||
16411265-C-T | 14299385-C-T | ** | ||||||||
16464714-T-C | 14352834-T-C | ** | ||||||||
16526618-T-C | 14414738-T-C | ** | ||||||||
16577683-C-A | 14465803-C-A | ** | ||||||||
16768311-A-G | 14656431-A-G | ** | ||||||||
16786189-A-C | 14674309-A-C | ** | ||||||||
16829217-T-G | 14717337-T-G | ** | ||||||||
16912599-T-C | 14800719-T-C | Y52526 | ** | |||||||
17053003-G-A | 14941123-G-A | ** | ||||||||
17090724-G-A | 14978844-G-A | Y19968 | ** | |||||||
17159043-C-A | 15047163-C-A | ** | ||||||||
17222507-C-T | 15110627-C-T | ** | ||||||||
17317570-C-A | 15205690-C-A | ** | ||||||||
17317589-C-A | 15205709-C-A | ** | ||||||||
17323676-A-G | 15211796-A-G | ** | ||||||||
17367768-G-A | 15255888-G-A | ** | ||||||||
17440804-C-A | 15328924-C-A | ** | ||||||||
17903404-G-A | 15791524-G-A | FT154468 | ** | |||||||
17947041-T-C | 15835161-T-C | ** | ||||||||
18079313-C-A | 15967433-C-A | ** | ||||||||
18089866-C-A | 15977986-C-A | ** | ||||||||
18153579-C-A | 16041699-C-A | ** | ||||||||
18354404-G-T | 16242524-G-T | P6_Prx | ** | |||||||
18522290-G-T | 16410410-G-T | P6_Dst | ** | |||||||
18565896-C-A | 16454016-C-A | ** | ||||||||
18660122-A-G | 16548242-A-G | ** | ||||||||
18856227-A-G | 16744347-A-G | ** | ||||||||
18901189-C-A | 16789309-C-A | ** | ||||||||
19062147-G-A | 16950267-G-A | ** | ||||||||
19299485-C-A | 17187605-C-A | ** | ||||||||
19379595-C-A | 17267715-C-A | ** | ||||||||
19416651-C-A | 17304771-C-A | ** | ||||||||
19529379-C-A | 17417499-C-A | ** | ||||||||
19622025-T-C | 17510145-T-C | P5_Prx | ** | |||||||
20380024-T-C | 18218138-T-C | P5_Dst | ** | |||||||
20569406-G-T | 18407520-G-T | P5_Dst | ** | |||||||
20694021-A-AC | 18532135-A-AC | P4_Prx | ** | |||||||
20865606-C-A | 18703720-C-A | P4_Dst | ** | |||||||
21061528-C-A | 18899642-C-A | ** | ||||||||
21307215-A-G | 19145329-A-G | ** | ||||||||
21383392-C-A | 19221506-C-A | ** | ||||||||
21416661-C-A | 19254775-C-A | ** | ||||||||
21582794-C-A | 19420908-C-A | ** | ||||||||
21742786-C-T | 19580900-C-T | ** | ||||||||
21856543-C-G | 19694657-C-G | ** | ||||||||
21939678-A-G | 19777792-A-G | ** | ||||||||
22040912-C-T | 19879026-C-T | ** | ||||||||
22167220-A-C | 20005334-A-C | ** | ||||||||
22518409-G-A | 20356523-G-A | Y27129 | ** | |||||||
22518410-C-T | 20356524-C-T | ** | ||||||||
22855372-G-C | 20693486-G-C | ** | ||||||||
22979457-T-C | 20817571-T-C | ** | ||||||||
22996928-C-A | 20835042-C-A | ** | ||||||||
23061967-A-G | 20900081-A-G | ** | ||||||||
23126262-A-T | 20964376-A-T | ** | ||||||||
23210011-G-A | 21048125-G-A | ** | ||||||||
23442399-A-G | 21280513-A-G | ** | ||||||||
23786355-C-A | 21624469-C-A | ** | ||||||||
23819108-G-T | 21657222-G-T | ** | ||||||||
24421013-G-A | 22274866-G-A | ** | ||||||||
24421048-A-T | 22274901-A-T | ** | ||||||||
24421075-C-A | 22274928-C-A | ** | ||||||||
24575916-T-G | 22429769-T-G | P3_t2 | ** | |||||||
26991311-C-A | 24845164-C-A | P1_r4 | ** | |||||||
28006325-C-A | 25860178-C-A | P1_Y2 | ** | |||||||
28234558-T-C | 26088411-T-C | P1_b4 | ** | |||||||
28460855-C-A | 26314708-C-A | ** | ||||||||
28484638-C-A | 26338491-C-A | ** | ||||||||
28569757-G-A | 26423610-G-A | ** | ||||||||
28587974-A-G | 26441827-A-G | ** | ||||||||
28631582-T-A | 26485435-T-A | ** | ||||||||
28687194-T-C | 26541047-T-C | ** | ||||||||
28715227-C-A | 26569080-C-A | ** | ||||||||
28725013-A-G | 26578866-A-G | ** | ||||||||
28798523-A-T | 26652376-A-T | ** | ||||||||
28800673-T-C | 26654526-T-C | ** | ||||||||
28812364-C-A | 26666217-C-A | ** | ||||||||
56830404-A-C | ** | |||||||||
56837781-G-T | ** | |||||||||
56846321-G-T | ** | |||||||||
18994849-AGAAG-A | 16882969-AGAAG-A | 6×GAAG | *** | |||||||
13864522-CATG-C | 11743816-CATG-C | *** | ||||||||
13864512-AATGGAC-A | 11743806-AATGGAC-A | *** | ||||||||
22445145-T-G | 20283259-T-G | DYZ19 | *** | |||||||
6114159-GCT-G | 6246118-GCT-G | *** | ||||||||
18300627-CA-C | 16188747-CA-C | P6_Prx | *** | |||||||
22426875-G-T | 20264989-G-T | DYZ19 | *** | |||||||
17596832-TTC-T | 15484952-TTC-T | *** | ||||||||
8556313-GTTT-G | 8688272-GTTT-G | 17×T | *** | |||||||
10958315-A-T | *** | |||||||||
56833358-C-G,T | *** | |||||||||
56833306-C-CAAATT | *** | |||||||||
10808590-C-G | *** | |||||||||
10808638-C-A | *** | |||||||||
11014378-A-T | *** | |||||||||
17193197-A-G | 15081317-A-G | *** | ||||||||
17193199-C-T | 15081319-C-T | *** | ||||||||
17193204-TTC-T | 15081324-TTC-T | *** | ||||||||
17193211-C-T | 15081331-C-T | *** | ||||||||
17193214-A-T | 15081334-A-T | *** | ||||||||
10795855-C-G | *** | |||||||||
10807278-A-G | *** | |||||||||
14590006-G-T | 12478206-G-T | *** | ||||||||
11018847-C-A | *** | |||||||||
24421135-G-A | 22274988-G-A | *** | ||||||||
56832162-C-A | *** | |||||||||
23068232-C-A | 20906346-C-A | *** | ||||||||
9942069-TTTG-T | 10104460-TTTG-T | *** | ||||||||
21224798-TG-G,T | 19062912-TG-G,T | *** | ||||||||
5084604-C-A | 5216563-C-A | *** | ||||||||
6773534-T-TTCC | 6905493-T-TTCC | *** | ||||||||
7418061-C-T | 7550020-C-T | *** | ||||||||
7974798-C-T | 8106757-C-T | *** | ||||||||
10032050-A-AT | 10194441-A-AT | 8×T | *** | |||||||
13456477-C-A | 11300801-C-A | *** | ||||||||
13801048-G-A | 11680342-G-A | *** | ||||||||
14187268-G-T | 12066562-G-T | *** | ||||||||
14550436-C-A | 12438637-C-A | *** | ||||||||
15161139-T-C | 13049225-T-C | *** | ||||||||
16922075-C-A | 14810195-C-A | *** | ||||||||
17056897-AT-A | 14945017-AT-A | *** | ||||||||
17170176-T-TG | 15058296-T-TG | *** | ||||||||
17170181-T-TA | 15058301-T-TA | *** | ||||||||
17170195-C-G | 15058315-C-G | *** | ||||||||
19563030-C-A | 17451150-C-A | *** | ||||||||
23304554-C-A | 21142668-C-A | *** | ||||||||
28225289-A-G | 26079142-A-G | P1_b4 | *** | |||||||
28234398-TTA-T,TTATATATA | 26088251-TTA-T,TTATATATA | P1_b4 | 18×TA | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Mutation Notes:
Kit | POSITION-REF-ALT (hg19) | POSITION-REF-ALT (hg38) | Note |
---|---|---|---|
Manual | 7973325-G-A | 8105284-G-A | 18A 3G |
Manual | 7581962-C-T | 7713921-C-T | 5T |