Quilter

Kane-BY3: B259296
MDKA Birth: Ireland > KY 1794

Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > L47/S170 > Z160 > Y46067

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-BY3
B259296
14435833-C-T 12315106-C-T S1251S1251 Y+
14435836-G-A 12315109-G-A S1251S1252 Y+
16242600-GTCTA-G 14130720-GTCTA-G 4×TCTA+
9677240-A-G 9839631-A-G IR3_Prx +
6155133-T-A 6287092-T-A BY59359BY59359 IR3_Dst +
10944536-C-T FT354131 +
5550280-G-GTT 5682239-G-GTT 39×T+
22248516-A-G 20086630-A-G DYZ19 +
13468923-C-T 11313247-C-T +
22259804-G-T 20097918-G-T DYZ19 +
7026119-T-C 7158078-T-C Y+
21665756-T-A 19503870-T-A YY+
23695835-C-G 21533949-C-G +
15669904-G-T 13558024-G-T Y+
4392282-C-CAAAAA 4524241-C-CAAAAA 45×A+
2968140-C-T 3100099-C-T +
2983250-C-A 3115209-C-A +
3275787-T-C 3407746-T-C +
3328589-C-T 3460548-C-T +
3463491-A-C 3595450-A-C +
3571752-G-GTTTTTTTT 3703711-G-GTTTTTTTT 45×T+
3657647-T-C 3789606-T-C +
4170809-G-A 4302768-G-A +
4627454-C-G 4759413-C-G +
5219717-T-C 5351676-T-C +
5435933-T-C 5567892-T-C +
6540366-T-C 6672325-T-C +
7024424-G-A 7156383-G-A Y+
7026646-G-A 7158605-G-A Y+
7031373-A-AT 7163332-A-AT 8×T+
7156909-CAG-C 7288868-CAG-C +
7293072-G-T 7425031-G-T YY+
7572329-G-T 7704288-G-T YY+
7916632-G-T 8048591-G-T YY+
8216060-G-A 8348019-G-A YY+
8446008-T-G 8577967-T-G YY+
8701152-TG-T 8833111-TG-T +
9385772-A-G 9548163-A-G Y+
9605259-C-T 9767650-C-T IR3_Prx +
9645641-G-C 9808032-G-C IR3_Prx +
9889574-G-A 10051965-G-A Y+
10868181-CT-C +
13329445-G-A 11173769-G-A +
13483012-T-C 11327336-T-C +
13705310-T-A 11549634-T-A +
13947710-T-A 11827004-T-A Y+
14382621-T-C 12261917-T-C Y+
15738785-G-T 13626905-G-T YY+
15772648-G-T 13660768-G-T YY+
15866268-C-CAAAAAAA 13754388-C-CAAAAAAA 43×A+
16232221-C-T 14120341-C-T YY+
16465537-C-T 14353657-C-T Y+
16553245-T-G 14441365-T-G YY+
17058678-A-G 14946798-A-G Y+
17125400-G-C 15013520-G-C Y+
17376098-T-A 15264218-T-A Y+
17522092-C-G 15410212-C-G Y+
17545423-C-G 15433543-C-G Y+
17787349-C-T 15675469-C-T Y+
18245300-G-T 16133420-G-T Y+
19015800-A-G 16903920-A-G Y+
19568565-T-G 17456685-T-G P5_Prx Y+
20114312-G-A 18002432-G-A P5_Dst +
20842931-C-T 18681045-C-T P4_Dst +
21653270-C-A 19491384-C-A YY+
21771810-C-A 19609924-C-A YY+
21930595-C-T 19768709-C-T YY+
22248488-T-G 20086602-T-G DYZ19 +
22439630-G-A 20277744-G-A DYZ19 +
22469927-C-G 20308041-C-G DYZ19 +
22487139-G-T 20325253-G-T DYZ19 +
23033578-C-A 20871692-C-A YY+
23103563-T-A 20941677-T-A Y+
25059619-G-A 22913472-G-A g1 +
25648129-C-T 23501982-C-T P1_b3 +
26060168-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 23914021-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA P1_Y1 39×A+
26983857-T-C 24837710-T-C P1_r4 +
28703383-C-T 26557236-C-T Y+
56754708-A-T +
59021760-T-C 56875613-T-C *
14429405-T-TTA,TTATA 12308680-T-TTATA,TTATATA 15×TA*
22444224-C-T 20282338-C-T DYZ19 *
22460287-G-A 20298401-G-A DYZ19 *
22460304-G-T 20298418-G-T DYZ19 *
22459161-C-T 20297275-C-T FT457458 DYZ19 *
22459165-G-T 20297279-G-T DYZ19 *
22459167-T-G 20297281-T-G DYZ19 *
22447102-C-T 20285216-C-T DYZ19 *
8970842-GAA-G 9133233-GAA-G 16×A*
6776606-AAC-A 6908565-AAC-A 9×AC*
9299748-G-C 9462139-G-C Y*
13463682-C-T 11308006-C-T *
13463689-C-T 11308013-C-T FT443967 *
13281348-G-A 11125672-G-A *
5470942-C-CAT 5602901-C-CAT 8×AT*
7179734-G-GTTT 7311693-G-GTTT 25×T*
13263270-G-A 11107594-G-A *
13284222-C-T 11128546-C-T *
13291896-G-GGT 11136220-G-GGT *
13295467-G-C 11139791-G-C *
13441433-T-TG 11285757-T-TG 10×G*
13494531-AAT-A 11338855-AAT-A *
13549880-G-GTA 11394204-G-GTA *
22863973-TAC-T 20702087-TAC-T *
25508362-T-C 23362215-T-C P1_gr1 *
13472038-G-T 11316362-G-T *
27641766-CTT-C 25495619-CTT-C P1_Y2 14×T*
6402502-TGTC-T 6534461-TGTC-T *
8433166-ATG-A 8565125-ATG-A *
13557341-CTAAA-C 11401665-CTAAA-C *
13569836-A-T 11414160-A-T *
13712874-G-C 11557198-G-C *
21166359-GTAA-G 19004473-GTAA-G 6×TAA*
22294180-T-A 20132294-T-A FGC59265ZS344 DYZ19 *
22430102-T-C 20268216-T-C DYZ19 *
22430115-A-T 20268229-A-T DYZ19 *
22459189-G-T 20297303-G-T BY220269 DYZ19 *
23334745-TTG-T 21172859-TTG-T *
59009649-C-T 56863502-C-T *
59009823-G-C 56863676-G-C *
59014004-C-T 56867857-C-T *
58996962-A-G 56850815-A-G *
58912415-T-C 56678456-A-G *
9963288-T-A 10125679-T-A Y*
10043362-C-T 10205753-C-T *
10043360-A-T 10205751-A-T *
13482208-C-A 11326532-C-A *
16293539-ATTT-A 14181659-ATTT-A 16×T*
7003106-G-T 7135065-G-T Y*
58916461-C-T 56674410-G-A *
13488678-G-A 11333002-G-A *
22317325-C-A 20155439-C-A DYZ19 *
28795834-ATGAAT-A 26649687-ATGAAT-A *
10766612-A-C *
56756869-G-A *
13500346-GTTTA-G 11344670-GTTTA-G 5×TTTA*
13488693-C-A 11333017-C-A *
15940342-G-T 13828462-G-T YY*
13461022-A-G 11305346-A-G *
13488692-T-A 11333016-T-A *
10766589-C-T *
58976202-C-CTCCATTCCAT 56830055-C-CTCCATTCCAT *
14213757-GAGAAAGAAAGAA-G,GAGAA 12093051-GAGAAAGAAAGAA-G,GAGAA 13×AGAA*
13474477-C-T 11318801-C-T *
8462064-CAAAAAAAA-C 8594023-CAAAAAAAA-C 26×A*
28818962-G-A 26672815-G-A *
16182699-A-AT 14070819-A-AT 10×T*
13045947-C-CAA 20×A*
17734039-CA-C 15622159-CA-C 10×A*
25990634-GTTTTTTTT-G 23844487-GTTTTTTTT-G P1_Y1 23×T*
14510449-GAAAA-G 12398654-GAAAA-G 21×A*
13488724-G-C 11333048-G-C *
13488731-C-T 11333055-C-T *
13708603-T-A 11552927-T-A *
13708605-G-A 11552929-G-A *
56707302-T-G *
5278183-A-C 5410142-A-C *
19479688-AGTGTGT-A,AGT 17367808-AGTGTGT-A,AGT 20×GT*
5278189-A-C 5410148-A-C *
10954350-C-A *
10766587-C-A *
4055281-A-C 4187240-A-C *
56884423-T-TAATATAATATA *
10766598-A-T *
13223339-C-G 11067663-C-G *
13461021-C-T 11305345-C-T *
13239513-C-CT 11083837-C-CT 17×T*
3115734-G-GAA 3247693-G-GAA 14×A*
13474501-G-A 11318825-G-A *
13489504-G-A 11333828-G-A *
28795861-A-C 26649714-A-C BY55580 *
13461090-C-A 11305414-C-A *
24446852-A-AT 22300705-A-AT 15×AT*
13468103-C-A 11312427-C-A *
13466000-G-T 11310324-G-T *
13474525-T-C 11318849-T-C *
7076612-C-CAA 7208571-C-CAA 29×A*
13433669-T-C 11277993-T-C *
13433673-A-G 11277997-A-G *
13468362-C-T 11312686-C-T *
13461105-T-A 11305429-T-A *
13468156-G-A 11312480-G-A *
25312633-C-A 23166486-C-A P2_r1 *
13465032-G-A 11309356-G-A *
15324319-CTT-C,CTTT 13212437-CTT-C,CTTT 25×T*
13242241-C-CTT 11086565-C-CTT 21×T*
13468354-G-T 11312678-G-T *
9958594-C-G 10120985-C-G Y*
13555794-A-G 11400118-A-G *
13473921-T-C 11318245-T-C *
13726529-G-T 11570853-G-T *
13497247-T-A 11341571-T-A *
13712297-G-A 11556621-G-A *
7461754-GT-G,GTT 7593713-GT-G,GTT IR1_L 23×T*
4571254-CAAAA-C 4703213-CAAAA-C 29×A*
4055283-T-A 4187242-T-A *
11034309-C-G *
13464989-T-C 11309313-T-C *
13433575-T-C 11277899-T-C *
13722767-G-T 11567091-G-T *
4031328-AT-A 4163287-AT-A 9×T*
21096458-CAAAA-C 18934572-CAAAA-C 16×A*
6402809-G-A 6534768-G-A *
13478311-C-T 11322635-C-T *
5569464-G-A 5701423-G-A FT150619 *
18639018-AGTGTGT-A,AGT 16527138-AGTGTGT-A,AGT 26×GT*
18818389-GAAA-G 16706509-GAAA-G 17×A*
13476644-G-T 11320968-G-T *
13492824-G-T 11337148-G-T *
13492827-G-C 11337151-G-C *
28581630-GATATAT-G,GAT 26435483-GATATAT-G,GAT 19×AT*
13419846-A-G 11264170-A-G *
9934802-G-T 10097193-G-T Y*
22505765-T-A 20343879-T-A DYZ19 *
25576946-TTGTG-T,TTG 23430799-TTGTG-T,TTG P1_gr1 18×TG*
22509512-G-C 20347626-G-C DYZ19 *
20574944-GT-G,GTT 18413058-GT-G,GTT P5_Dst 19×T*
13448300-C-A 11292624-C-A *
56844318-T-G *
13498994-A-G 11343318-A-G *
13377552-T-C 11221876-T-C *
13488741-T-C 11333065-T-C *
10043363-A-G 10205754-A-G *
13472110-T-C 11316434-T-C *
28813902-C-G 26667755-C-G BY152190 *
13466537-C-G 11310861-C-G *
13466556-C-T 11310880-C-T *
13466562-T-A 11310886-T-A *
13466573-G-A 11310897-G-A *
13606846-A-C 11451170-A-C *
13400366-T-C 11244690-T-C *
13479109-G-A 11323433-G-A *
56756879-GAA-G *
56756883-GGGATGGAATGGTA-G *
13443491-C-A 11287815-C-A *
13463679-C-T 11308003-C-T *
13470261-C-G 11314585-C-G *
13476699-C-T 11321023-C-T *
13252615-C-G 11096939-C-G *
13468326-T-C,G 11312650-T-C,G *
13470302-C-T 11314626-C-T *
13474400-G-A 11318724-G-A *
13478193-G-GAA 11322517-G-GAA *
13545390-AGAAAGAAAGAAG-A 11389714-AGAAAGAAAGAAG-A *
13629359-G-A 11473683-G-A *
22459160-C-T 20297274-C-T DYZ19 *
56826039-T-TG *
56826854-T-C *
56831825-TTGCATTGCA-T *
13390081-T-C 11234405-T-C *
6402759-ATAAAATAAGGACGTACATGTTGCATTCGTCAGTGTCG-A 6534718-ATAAAATAAGGACGTACATGTTGCATTCGTCAGTGTCG-A *
13476686-T-A 11321010-T-A *
13482156-A-T 11326480-A-T *
13489860-G-A 11334184-G-A *
13461102-C-G 11305426-C-G *
13461966-G-A 11306290-G-A *
13469083-A-G 11313407-A-G *
13712569-A-AGG 11556893-A-AGG *
13466401-CTGT-C 11310725-CTGT-C *
13466405-AGGCAGAGCCTAGACAAGAGTCCCATCACCTGGGTGATCAGTGCAGAGTTATGTCAAAATGCCCCC-A 11310729-AGGCAGAGCCTAGACAAGAGTCCCATCACCTGGGTGATCAGTGCAGAGTTATGTCAAAATGCCCCC-A *
13611827-AACCTTTTTTTT-A 11456151-AACCTTTTTTTT-A *
7464037-CAA-C 7595996-CAA-C IR1_L 19×A*
9964767-T-C 10127158-T-C Y*
9964772-T-C 10127163-T-C Y*
22447499-C-A 20285613-C-A DYZ19 *
13480818-G-A 11325142-G-A *
56856117-A-AG,G *
13464518-A-G 11308842-A-G *
13464535-C-G 11308859-C-G *
13464548-C-A 11308872-C-A *
13464560-A-T 11308884-A-T *
13489311-G-A 11333635-G-A *
56822369-C-T *
13479157-G-C 11323481-G-C *
13451691-C-T 11296015-C-T *
13476707-G-C 11321031-G-C *
56846631-ACT-A *
13463330-T-C 11307654-T-C *
22505741-T-A 20343855-T-A DYZ19 *
28586717-T-C 26440570-T-C *
56832539-C-A,CTCCAATCCATTCCAT *
22447106-C-G 20285220-C-G DYZ19 *
13242231-TATCAGG-T 11086555-TATCAGG-T *
6776497-CA-C,CAA 6908456-CA-C,CAA 28×A*
13464741-C-G 11309065-C-G *
13479133-G-GAT 11323457-G-GAT *
13479134-CCT-C 11323458-CCT-C *
13470310-CCA-C 11314634-CCA-C *
13470316-C-CGA 11314640-C-CGA *
13475279-G-A 11319603-G-A *
13506676-T-TTAA 11351000-T-TTAA *
3076069-CTTTTTTTTT-C 3208028-CTTTTTTTTT-C 25×T*
56825991-AGTTCATTCCATTCGAGTTCCTTCCATTCGAGTTCATTCCATTCGAG-A *
13470180-C-G 11314504-C-G *
13489326-T-C 11333650-T-C *
13433630-CTT-C 11277954-CTT-C *
13433650-C-A 11277974-C-A *
13476725-GC-G 11321049-GC-G *
56834505-CTCCATTCCTCTCCATTCCATTCCACTCCACTCCATTCCATACCAT-C *
13461088-AT-A 11305412-AT-A *
3249466-T-TTG,TTGTG 3381425-T-TTG,TTGTG 17×TG*
3663074-CACATATGTATACATATGT-C 3795033-CACATATGTATACATATGT-C *
4697617-A-T 4829576-A-T *
6861230-T-TTTTCTTTC,TTTTCTTTCTTTC 6993189-T-TTTTCTTTC,TTTTCTTTCTTTC 17×TTTC*
8208674-A-C 8340633-A-C YY*
8801249-TG-T 8933208-TG-T *
9177929-TTGTG-T,TTGTGTG 9340320-TTGTG-T,TTGTGTG 15×TG*
9329565-C-T 9491956-C-T Y*
9329572-T-C 9491963-T-C Y*
9373204-G-A 9535595-G-A Y*
10766582-C-T *
10766607-C-T *
10766616-C-G *
10921325-CCACTCCACTCCACTTCAATCCACTACATTCCATTCCACTCCACCCCCCTCCAATG-C *
10926539-TC-T *
10954327-A-ATTC *
10954330-C-CTG *
10987169-CTCCATTCCATTCCATTCCAT-C *
13223346-A-G 11067670-A-G *
13223545-AGAGGAAGGGAGGGAGGGAGAGGAAGGAAGGGAGGGAGAGGGAGGAAAGGAGGGAGAGGGAGGAACAGAGGGAGAGG-A 11067869-AGAGGAAGGGAGGGAGGGAGAGGAAGGAAGGGAGGGAGAGGGAGGAAAGGAGGGAGAGGGAGGAACAGAGGGAGAGG-A *
13329987-CTTT-C 11174311-CTTT-C 15×T*
13461129-TATAG-T 11305453-TATAG-T *
13461136-AG-A 11305460-AG-A *
13464960-A-G 11309284-A-G *
13464970-G-T 11309294-G-T *
13465097-A-T 11309421-A-T *
13465107-T-C 11309431-T-C *
13465974-A-AGT,G 11310298-A-AGT,G *
13465977-CAT-C,TAT 11310301-CAT-C,TAT *
13465988-G-A,GT 11310312-G-A,GT *
13468119-C-G 11312443-C-G *
13468128-G-A 11312452-G-A *
13468142-C-T 11312466-C-T *
13468155-A-C 11312479-A-C *
13468159-G-C 11312483-G-C *
13468571-ATATGT-A 11312895-ATATGT-A *
13472520-C-A 11316844-C-A *
13479112-C-CTG 11323436-C-CTG *
13479114-ACG-A 11323438-ACG-A *
13484181-T-C 11328505-T-C *
13484197-A-T 11328521-A-T *
13484198-G-T 11328522-G-T *
13484201-A-C 11328525-A-C *
13533009-G-T 11377333-G-T *
13537077-C-A 11381401-C-A *
13538880-G-A 11383204-G-A *
13550389-G-A 11394713-G-A *
13687028-G-T 11531352-G-T *
13687044-A-C 11531368-A-C *
13716325-A-G 11560649-A-G *
13858510-AAATGGAATGGAATGG-A,AAATGG 11737804-AAATGGAATGGAATGG-A,AAATGG 15×AATGG*
14071354-CTTTTT-C,CTTT 11950648-CTTTTT-C,CTTT 25×T*
14107851-A-C 11987145-A-C YY*
15940348-G-T 13828468-G-T YY*
17700135-C-T 15588255-C-T Y*
18096891-A-ATTT 15985011-A-ATTT 11×T*
18780227-C-T 16668347-C-T YY*
19036747-T-TTTTTTTTTG 16924867-T-TTTTTTTTTG *
19130772-GC-G 17018892-GC-G *
19130780-G-T 17018900-G-T YY*
21402181-C-CTTTT 19240295-C-CTTTT 34×T*
22281156-T-A 20119270-T-A DYZ19 *
22281157-C-A 20119271-C-A DYZ19 *
22288709-A-T 20126823-A-T DYZ19 *
22294181-G-A 20132295-G-A DYZ19 *
22306510-A-T 20144624-A-T DYZ19 *
22339816-G-C 20177930-G-C DYZ19 *
22483227-A-G 20321341-A-G DYZ19 *
22512543-A-G 20350657-A-G DYZ19 *
23188794-T-TC 21026908-T-TC *
23188799-T-C 21026913-T-C Y*
23886722-A-ATT 21724836-A-ATT 13×T*
24931653-T-A 22785506-T-A g1 *
24931660-T-A 22785513-T-A g1 *
26970673-T-C 24824526-T-C P1_r4 *
27610046-ACACACG-A 25463899-ACACACG-A P1_Y2 *
27714159-A-AT 25568012-A-AT P1_Y2 *
27916280-TGAGA-T 25770133-TGAGA-T P1_Y2 *
28148881-G-GA 26002734-G-GA P1_b4 9×A*
28539174-CAAA-C,CAA 26393027-CAAA-C,CAA 20×A*
28787297-T-A 26641150-T-A *
28790759-G-A 26644612-G-A *
28796522-G-A 26650375-G-A *
56678150-A-C *
56705891-GAATGGAATGA-G *
56849396-T-C *
56849790-C-A *
56850859-G-T *
56850893-T-C *
56884027-TG-T *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.