Dean

Kane-BY3: 124753
MDKA Birth: United States > Mississippi 1781

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > Y17161 > Y16889 > A7992 > BY121456 > FGC59787 > CTS918

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-BY3
124753
13740913-G-C 11585237-G-C +
22349269-T-C 20187383-T-C DYZ19 +
22349274-T-G 20187388-T-G DYZ19 +
22341485-T-A 20179599-T-A DYZ19 +
28021912-T-TA 25875765-T-TA P1_Y2 17×A+
22311668-G-A 20149782-G-A DYZ19 +
22311666-G-A 20149780-G-A DYZ19 +
22311688-G-C 20149802-G-C DYZ19 +
9199452-G-T 9361843-G-T Y+
5088751-CT-C 5220710-CT-C 23×T+
10648924-C-CCCATTCCATT +
10789893-CTTCCATTCCA-C +
8085662-C-A 8217621-C-A YY+
15297284-ATT-A 13185383-ATT-A 27×T+
23226363-C-A 21064477-C-A Y+
22341494-T-A 20179608-T-A DYZ19 +
22341518-G-A 20179632-G-A DYZ19 +
24422478-C-CAAAAAAA 22276331-C-CAAAAAAA 43×A+
23695835-C-T 21533949-C-T +
10632738-ATTCCATCCATATCATTCCATTCCC-A +
21551597-GTATGTATGTATGTGTACATA-G 19389711-GTATGTATGTATGTGTACATA-G +
10647534-TATTCCATTCC-T +
5931916-C-CTTTTTT 6063875-C-CTTTTTT 32×T+
2807024-T-TTATATA 2938983-T-TTATATA 20×TA+
8181175-A-ATTTT 8313134-A-ATTTT 38×T+
9799494-T-A 9961885-T-A Y+
13923558-A-AAT 11802852-A-AAT 20×AT+
17062201-A-C 14950321-A-C Y+
19365778-T-C 17253898-T-C YY+
21577389-G-A 19415503-G-A Y+
22349251-A-T 20187365-A-T DYZ19 +
22349253-G-T 20187367-G-T DYZ19 +
22349257-C-G 20187371-C-G DYZ19 +
22438979-A-G 20277093-A-G DYZ19 +
25627217-GA-G 23481070-GA-G P1_b3 11×A+
27007636-G-A 24861489-G-A P1_r4 +
27039142-A-T 24892995-A-T P1_r4 +
28117580-G-A 25971433-G-A P1_b4 +
56742387-T-G +
25815191-ATGTG-A 23669044-ATGTG-A P1_b3 13×TG*
13692543-T-G 11536867-T-G *
13692659-A-G 11536983-A-G *
13713000-AT-A 11557324-AT-A *
19966688-AAAGAAGAAG-A,AAAGAAG 17854808-AAAGAAGAAG-A,AAAGAAG P5_Prx 26×AAG*
13688181-A-AGAATGGAATGGAATGGAATG 11532505-A-AGAATGGAATGGAATGGAATG 8×GAATG*
13484171-C-A 11328495-C-A BY86133 *
28454731-A-AT 26308584-A-AT P1_gr2 10×T*
26992907-GT-G 24846760-GT-G P1_r4 24×T*
27994688-TA-T 25848541-TA-T P1_Y2 13×A*
21824255-C-CAAAA 19662369-C-CAAAA 30×A*
27424163-C-CT 25278016-C-CT P1_g3 17×T*
21853677-C-CAAAA 19691791-C-CAAAA 43×A*
28369379-CA-C 26223232-CA-C P1_gr2 18×A*
13726697-C-G 11571021-C-G *
13728164-T-C 11572488-T-C *
13379939-G-C 11224263-G-C *
22504393-G-C 20342507-G-C DYZ19 *
13474677-C-A 11319001-C-A *
13498052-G-T 11342376-G-T *
9299748-G-C 9462139-G-C Y*
9951939-G-T 10114330-G-T Y*
28802784-A-G 26656637-A-G *
27641766-CT-C 25495619-CT-C P1_Y2 14×T*
13726530-A-C 11570854-A-C *
59021840-C-G 56875693-C-G *
3404259-G-A 3536218-G-A *
3420807-T-G 3552766-T-G *
3426131-G-A 3558090-G-A *
3861383-C-T 3993342-C-T *
3932521-G-A 4064480-G-A *
3989883-T-A 4121842-T-A *
5086909-T-C 5218868-T-C *
6403259-A-G 6535218-A-G *
13243953-A-G 11088277-A-G *
13243978-T-G 11088302-T-G *
13261840-A-C 11106164-A-C *
13265694-A-C 11110018-A-C *
13297479-GGTAA-G 11141803-GGTAA-G *
13379908-T-C 11224232-T-C *
13379991-C-G 11224315-C-G *
13400470-G-A 11244794-G-A *
13445111-T-A 11289435-T-A *
13541762-GA-G 11386086-GA-G *
13541791-T-G 11386115-T-G *
13606877-C-CAA 11451201-C-CAA 25×A*
22458567-A-C 20296681-A-C DYZ19 *
22467909-A-G 20306023-A-G BY222005 DYZ19 *
22233399-T-C 20071513-T-C Y108795 DYZ19 *
13473853-T-A 11318177-T-A *
22504378-C-A 20342492-C-A DYZ19 *
10066882-T-A 10229273-T-A *
10066871-T-G 10229262-T-G *
4036049-T-A 4168008-T-A *
6517064-A-G 6649023-A-G *
6517067-T-C 6649026-T-C *
13243462-G-A 11087786-G-A *
13415029-A-T 11259353-A-T *
13442817-A-T 11287141-A-T *
13692703-T-C 11537027-T-C *
13707003-G-A 11551327-G-A *
17208757-TTC-T 15096877-TTC-T *
17323989-T-G 15212109-T-G FT400385 YY*
22294180-T-A 20132294-T-A FGC59265ZS344 DYZ19 *
22458531-G-A 20296645-G-A S8368ZS1146 DYZ19 *
22486804-G-T 20324918-G-T BY48657 DYZ19 *
28792783-C-G 26646636-C-G *
28792786-C-A 26646639-C-A *
28809963-CG-C 26663816-CG-C *
59006608-A-G 56860461-A-G *
59008693-C-T 56862546-C-T *
59019562-G-A 56873415-G-A *
59023859-T-C 56877712-T-C *
9298915-A-C 9461306-A-C Y*
13720565-A-G 11564889-A-G *
22504376-G-C 20342490-G-C DYZ19 *
22427066-A-T 20265180-A-T DYZ19 *
16242632-T-TTCTA,TTCTATCTA 14130752-T-TTCTA,TTCTATCTA 10×TCTA*
58982008-A-T 56835861-A-T *
13695618-G-C 11539942-G-C BY30501 *
22466052-T-C 20304166-T-C DYZ19 *
22230264-C-A 20068378-C-A FGC80504 DYZ19 *
25504672-C-A 23358525-C-A P1_gr1 *
22465092-AG-A 20303206-AG-A BY18729 DYZ19 *
9198800-G-T 9361191-G-T Y*
6191304-CAA-C 6323263-CAA-C IR3_Dst 15×A*
13469623-C-G 11313947-C-G *
13258359-A-AT 11102683-A-AT 9×T*
13362360-CAAA-C 11206684-CAAA-C 19×A*
22328558-T-G 20166672-T-G DYZ19 *
58973193-C-T 56827046-C-T *
22233379-A-T 20071493-A-T DYZ19 *
22233380-A-G 20071494-A-G DYZ19 *
22233390-A-T 20071504-A-T DYZ19 *
13747961-G-T 11592285-G-T *
28147152-GCACA-G 26001005-GCACA-G P1_b4 13×CA*
9211247-AAC-A 9373638-AAC-A 18×AC*
13729762-A-T 11574086-A-T *
13729829-C-A 11574153-C-A *
9238868-TTG-T 9401259-TTG-T 15×TG*
13464103-T-C 11308427-T-C *
24870878-T-G 22724731-T-G IR1_R *
4050010-ATAATT-A 4181969-ATAATT-A *
10654872-C-A *
19130738-C-CTT 17018858-C-CTT 33×T*
13473768-G-T 11318092-G-T *
2919170-CTT-C 3051129-CTT-C 11×T*
13480397-C-A 11324721-C-A *
13469667-C-A 11313991-C-A *
25963867-C-CTT 23817720-C-CTT P1_Y1 34×T*
13460990-C-G 11305314-C-G *
13254220-G-A 11098544-G-A *
13404002-G-C 11248326-G-C *
56835350-C-T *
13290826-A-G 11135150-A-G *
13748406-T-C 11592730-T-C *
17731014-C-CAAA 15619134-C-CAAA 35×A*
13541725-G-A 11386049-G-A FGC55052 *
13541739-T-C 11386063-T-C *
13521695-G-T 11366019-G-T BY210419 *
13477114-G-A 11321438-G-A *
13940857-A-AAG,AAGAG 11820151-A-AAG,AAGAG 18×AG*
13362514-C-CA 11206838-C-CA 11×A*
23825773-A-AAT 21663887-A-AAT 11×AT*
13253096-T-G 11097420-T-G *
18329043-CT-C 16217163-CT-C P6_Prx 17×T*
10800730-T-C *
13461827-C-A 11306151-C-A *
13474477-C-A 11318801-C-A *
13461321-G-C 11305645-G-C *
56850162-G-T *
13705474-AGGAAT-A 11549798-AGGAAT-A 10×GGAAT*
13470586-G-A 11314910-G-A *
3908945-CAA-C 4040904-CAA-C 15×A*
13478326-G-T 11322650-G-T *
13723736-T-A 11568060-T-A *
10993223-T-C *
2798710-ATT-A,ATTT 2930669-ATT-A,ATTT 20×T*
28120590-A-T 25974443-A-T P1_b4 *
28588305-GAGCTATCAAGAAAGAC-G 26442158-GAGCTATCAAGAAAGAC-G *
22486814-C-A 20324928-C-A BY224856 DYZ19 *
10066859-T-A 10229250-T-A *
8379577-CTGTGTG-C,CTG 8511536-CTGTGTG-C,CTG 18×TG*
10648448-T-C *
13429264-A-C 11273588-A-C *
13429301-T-C 11273625-T-C *
13468472-C-A,G 11312796-C-A,G *
13555794-A-G 11400118-A-G *
13555833-G-A 11400157-G-A *
13564751-T-C 11409075-T-C *
13564754-C-T 11409078-C-T *
13692638-T-A 11536962-T-A *
13711615-A-G 11555939-A-G *
13415754-A-C 11260078-A-C *
13415772-C-T 11260096-C-T *
13711737-T-A 11556061-T-A *
13726529-G-T 11570853-G-T *
13489289-G-T 11333613-G-T *
17751221-T-A 15639341-T-A YY*
58975519-T-G 56829372-T-G *
13378482-C-G 11222806-C-G *
13470070-C-T 11314394-C-T *
13461900-C-G 11306224-C-G *
7362206-T-C 7494165-T-C YY*
13372652-T-C 11216976-T-C *
56822627-T-A *
28544759-A-G 26398612-A-G *
13415736-A-C 11260060-A-C *
13413179-T-C 11257503-T-C *
13429311-T-G 11273635-T-G *
13371778-G-T 11216102-G-T *
13739721-T-A 11584045-T-A *
25356955-T-TA 23210808-T-TA P2_r2 10×A*
13464073-C-G 11308397-C-G *
13339632-G-T 11183956-G-T *
6648613-CTTT-C,CTT 6780572-CTTT-C,CTT 27×T*
13484177-T-C 11328501-T-C *
13469677-A-G 11314001-A-G *
13469798-G-T 11314122-G-T *
5228371-CGTGT-C,CGT 5360330-CGTGT-C,CGT 16×GT*
13479403-A-G 11323727-A-G *
13502529-A-T 11346853-A-T *
13300026-T-C 11144350-T-C *
10954313-TTCCACTTCATTCCAC-T *
13473823-C-G 11318147-C-G *
13476253-C-T 11320577-C-T *
28797893-CGGTG-C 26651746-CGGTG-C *
56834810-T-TTCCATTCCACGCC *
13489938-T-G 11334262-T-G *
22489898-C-A 20328012-C-A DYZ19 *
13253767-T-G 11098091-T-G *
13253770-C-T 11098094-C-T *
13688469-A-C 11532793-A-C *
13497756-C-T 11342080-C-T *
13479556-A-G 11323880-A-G *
13479566-C-A 11323890-C-A *
13479572-T-G 11323896-T-G *
13479577-T-A 11323901-T-A *
13479629-C-T 11323953-C-T *
13506506-A-T 11350830-A-T *
13506509-A-C 11350833-A-C *
56835864-C-CACTCTA *
56835866-TG-T *
56867490-T-A *
56874786-C-CTTTTTTTTTT 11×T*
56878274-T-A *
9949798-A-T 10112189-A-T Y*
9949800-G-A 10112191-G-A Y*
9949873-G-A 10112264-G-A Y*
9965780-T-A 10128171-T-A Y*
9965781-G-A 10128172-G-A Y*
13297859-A-G 11142183-A-G *
13372671-T-A 11216995-T-A *
13392209-C-A 11236533-C-A *
13489594-C-T 11333918-C-T *
22509566-A-C 20347680-A-C DYZ19 *
13477179-G-C 11321503-G-C *
13471852-T-TCA 11316176-T-TCA *
13471856-GGA-G 11316180-GGA-G *
13471884-G-A 11316208-G-A *
2708411-C-CGAGA,CGAGAGA 2840370-C-CGAGA,CGAGAGA 23×GA*
13474476-G-T 11318800-G-T *
56886100-A-AC *
9993125-G-C 10155516-G-C Y*
13423798-G-C 11268122-G-C *
13489534-G-GCGAC 11333858-G-GCGAC *
13489555-C-CCG 11333879-C-CCG *
13474542-A-C 11318866-A-C *
13474549-C-CAA 11318873-C-CAA *
28586704-T-C 26440557-T-C *
56825930-GATTTCATTCCATTCA-G *
13464119-C-T 11308443-C-T *
9941558-G-A 10103949-G-A Y*
13473849-A-T 11318173-A-T *
13475832-A-T 11320156-A-T *
13475855-A-G 11320179-A-G *
9963939-G-T 10126330-G-T Y*
9963941-T-A 10126332-T-A Y*
9963946-A-G 10126337-A-G Y*
13702604-ACT-A 11546928-ACT-A *
13702608-T-TTA 11546932-T-TTA *
22230267-A-T 20068381-A-T DYZ19 *
10022452-C-T 10184843-C-T Y*
13469694-AAAATTCCCATCCGCTGGGTAATC-A 11314018-AAAATTCCCATCCGCTGGGTAATC-A *
13469721-GCAGAGATACGTCACAAAGCCCCGTAGGCAGAGCATAGACAAGAT-G 11314045-GCAGAGATACGTCACAAAGCCCCGTAGGCAGAGCATAGACAAGAT-G *
22298188-G-A 20136302-G-A BY52412 DYZ19 *
13267613-A-AAAAAAAAG 11111937-A-AAAAAAAAG *
21085779-CA-C,CAAAA 18923893-CA-C,CAAAA 24×A*
22284486-TTCCAGAGTTTGTTCCTTCAGTTGTGTGCAGTGTTTCTTCCTTCTGGCAGGTTCATGGTCTTGATCACTTCAAGAAAGAAGCTGCAGAACTTAGTGGTGAGTTTTACAGCACTTAAAGGTGTTATA-T 20122600-TTCCAGAGTTTGTTCCTTCAGTTGTGTGCAGTGTTTCTTCCTTCTGGCAGGTTCATGGTCTTGATCACTTCAAGAAAGAAGCTGCAGAACTTAGTGGTGAGTTTTACAGCACTTAAAGGTGTTATA-T DYZ19 *
28802745-ATTCAAATTGCATAGAATGGAATCAAATGGAATGCG-A 26656598-ATTCAAATTGCATAGAATGGAATCAAATGGAATGCG-A *
9965794-T-A 10128185-T-A Y*
9965799-T-G 10128190-T-G Y*
13478271-G-A 11322595-G-A *
10022098-G-T 10184489-G-T Y*
10022101-G-C 10184492-G-C Y*
10954337-A-T *
13697156-A-G 11541480-A-G *
13341417-T-C 11185741-T-C *
13489908-C-A 11334232-C-A *
5905921-T-A 6037880-T-A *
3483637-GACAC-G,GAC 3615596-GACAC-G,GAC 15×AC*
13445362-CAAAAAA-C,CAAAAA 11289686-CAAAAAA-C,CAAAAA 15×A*
13469670-T-A 11313994-T-A *
7100954-CT-C,CTTTT 7232913-CT-C,CTTTT 32×T*
22267167-T-A 20105281-T-A BY214837 DYZ19 *
13419495-C-T 11263819-C-T *
13419502-G-A 11263826-G-A *
13464081-C-T 11308405-C-T *
13464111-C-T 11308435-C-T *
13464085-C-G 11308409-C-G *
13469664-T-A 11313988-T-A *
56736886-A-T *
9963921-A-C 10126312-A-C Y*
9963929-A-G 10126320-A-G Y*
9966766-G-GCC 10129157-G-GCC *
9966767-AAG-A 10129158-AAG-A *
56877795-G-A *
13451481-TTCTATTCTGCTCCATTCTATTCCACTCGAC-T 11295805-TTCTATTCTGCTCCATTCTATTCCACTCGAC-T *
13263496-A-G 11107820-A-G *
13474756-G-T 11319080-G-T *
3914846-G-A 4046805-G-A *
19126436-C-CAAAAAAAAAAA,CAAAAAAAAAAAA 17014556-C-CAAAAAAAAAAA,CAAAAAAAAAAAA 25×A*
22439477-GAATGAAGCTGCAGACCTTAGTGATGATCGTTACAGCACTTAAGTTTTTATGTCCAGAGTTTTTTCCTTCAGATATGTTTAGAGTTTCTTCCTTCTGGCAGGTTCATGGTCGTGCTCACTTCAAA-G 20277591-GAATGAAGCTGCAGACCTTAGTGATGATCGTTACAGCACTTAAGTTTTTATGTCCAGAGTTTTTTCCTTCAGATATGTTTAGAGTTTCTTCCTTCTGGCAGGTTCATGGTCGTGCTCACTTCAAA-G DYZ19 *
13468473-G-A,T 11312797-G-A,T *
13611827-AACCTTTTTTTTTT-A 11456151-AACCTTTTTTTTTT-A *
28549522-C-T 26403375-C-T *
9936527-C-T 10098918-C-T Y*
26204620-GTTT-G 24058473-GTTT-G P1_Y1 25×T*
56835362-ACTCCACTCCACTCCAGTACATTC-A *
5905918-G-T 6037877-G-T *
13737424-G-T 11581748-G-T *
23672309-CGG-C 21510423-CGG-C *
13469657-A-G 11313981-A-G *
13481555-T-G 11325879-T-G *
13489526-ACCCG-A 11333850-ACCCG-A *
24052993-G-C 21906846-G-C P3_b1 *
13474768-T-C 11319092-T-C *
13423821-TC-T 11268145-TC-T *
22458556-A-T 20296670-A-T DYZ19 *
22294170-T-A 20132284-T-A DYZ19 *
3499508-A-C 3631467-A-C *
13423837-T-C 11268161-T-C *
3400181-T-C 3532140-T-C *
3539814-T-C 3671773-T-C *
4044311-T-C 4176270-T-C *
4046971-C-G 4178930-C-G *
5289090-TACACAC-T,TAC 5421049-TACACAC-T,TAC 19×AC*
5299356-T-G 5431315-T-G *
5945467-C-CTTTT 6077426-C-CTTTT 25×T*
6226103-C-CTTTCTT 6358062-C-CTTTCTT IR3_Dst *
7179733-A-T 7311692-A-T YY*
7364367-GTTT-G,GTT 7496326-GTTT-G,GTT 27×T*
7451043-TAA-T 7583002-TAA-T IR1_L 13×A*
7534406-G-GTTTTTTTTTTTTTTTT 7666365-G-GTTTTTTTTTTTTTTTT 19×T*
9192280-T-A 9354671-T-A Y*
9319493-T-C 9481884-T-C Y*
9342039-T-A 9504430-T-A Y*
9345054-G-GGGGGGGCCC 9507445-G-GGGGGGGCCC *
9799134-CAAAAAAAA-C,CA 9961525-CAAAAAAAA-C,CA 24×A*
9852982-GA-G 10015373-GA-G *
9852986-GA-G 10015377-GA-G *
9908804-C-T 10071195-C-T Y*
9908805-T-G 10071196-T-G Y*
9908809-A-T 10071200-A-T Y*
9908810-A-G 10071201-A-G Y*
9908818-A-T 10071209-A-T Y*
9908828-A-G 10071219-A-G Y*
9908854-C-T 10071245-C-T Y*
9918621-A-AT 10081012-A-AT *
9918632-G-C 10081023-G-C Y*
10800722-C-T *
10809527-A-T *
10858448-C-A *
10858449-A-G *
10862597-CTCCAT-C *
11011659-T-G *
13292016-C-A 11136340-C-A *
13300701-CTATT-C 11145025-CTATT-C 5×TATT*
13339119-T-A 11183443-T-A *
13339135-G-C 11183459-G-C *
13339835-C-A 11184159-C-A *
13345360-G-A 11189684-G-A *
13378092-G-A 11222416-G-A *
13464088-G-A 11308412-G-A *
13464112-C-A 11308436-C-A *
13464121-G-T 11308445-G-T *
13464752-C-G 11309076-C-G *
13468609-G-C 11312933-G-C *
13469641-T-A 11313965-T-A *
13469660-T-C 11313984-T-C *
13475834-G-C 11320158-G-C *
13475848-A-G 11320172-A-G *
13484132-A-T 11328456-A-T *
13487386-C-CAG 11331710-C-CAG *
13487390-G-C 11331714-G-C *
13487391-AGG-A 11331715-AGG-A *
13489857-C-G 11334181-C-G *
13489919-C-A 11334243-C-A *
13489949-C-G 11334273-C-G *
13535636-G-T 11379960-G-T *
13703974-T-G 11548298-T-G *
13721217-G-A 11565541-G-A *
13723856-C-A 11568180-C-A *
13737429-G-T 11581753-G-T *
14466973-C-T 12346246-C-T YY*
14467214-C-T 12346483-C-T YY*
15566861-C-A 13454981-C-A YY*
20632513-A-C 18470627-A-C P4_Prx *
22233160-A-G 20071274-A-G DYZ19 *
22233257-C-G 20071371-C-G DYZ19 *
22235476-T-C 20073590-T-C DYZ19 *
22249691-G-T 20087805-G-T DYZ19 *
22284642-A-T 20122756-A-T DYZ19 *
22294168-C-A 20132282-C-A DYZ19 *
22298184-T-C 20136298-T-C DYZ19 *
22306995-G-A 20145109-G-A DYZ19 *
22307002-G-GT 20145116-G-GT DYZ19 *
22325349-C-A 20163463-C-A DYZ19 *
22325372-TTC-T 20163486-TTC-T DYZ19 *
22335188-G-C 20173302-G-C DYZ19 *
22353153-C-A 20191267-C-A DYZ19 *
22353790-G-T 20191904-G-T DYZ19 *
22427083-T-G 20265197-T-G DYZ19 *
22457945-C-A 20296059-C-A DYZ19 *
22461177-C-A 20299291-C-A DYZ19 *
22461185-C-A 20299299-C-A DYZ19 *
22467894-T-C 20306008-T-C DYZ19 *
22467967-A-C 20306081-A-C DYZ19 *
22467972-T-G 20306086-T-G DYZ19 *
22469438-A-T 20307552-A-T DYZ19 *
22469440-T-C 20307554-T-C DYZ19 *
22486806-G-C 20324920-G-C DYZ19 *
22511802-G-T 20349916-G-T DYZ19 *
23672293-T-TAC 21510407-T-TAC *
24052996-C-A 21906849-C-A P3_b1 *
25504682-C-A 23358535-C-A P1_gr1 *
25505124-CTTTTTTTTTTTTTTTTTTT-C 23358977-CTTTTTTTTTTTTTTTTTTT-C P1_gr1 39×T*
25533185-TTTG-T 23387038-TTTG-T P1_gr1 6×TTG*
28544773-C-T 26398626-C-T *
28802791-G-A 26656644-G-A *
28805504-ATTGGAATTGAGTG-A 26659357-ATTGGAATTGAGTG-A *
56835865-G-C *
56854129-AC-A *
56872568-A-C *
56878273-A-ACACAC *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.