Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > L901/M2939[H]

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-Dante
60820188480958
17920941-CAAAAAAAAAAAAAAAAAAAAAAAAA-C 15809061-CAAAAAAAAAAAAAAAAAAAAAAAAA-C 45×A+
13963824-AT-A 11843118-AT-A 49×T+
13203846-A-G 11048170-A-G +
13203850-T-TGGA 11048174-T-TGGA +
14025579-A-AAAGC 11904873-A-AAAGC +
14695992-CAAAAAAAAAA-C 12584058-CAAAAAAAAAA-C 30×A+
15411308-CAAAAAAAAA-C 13299428-CAAAAAAAAA-C 30×A+
18395765-AT-A 16283885-AT-A P6_Gap +
18395767-ATATATATAT-A 16283887-ATATATATAT-A P6_Gap +
18679925-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA 16568045-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA 25×A+
19206741-T-TAAAAAAAAAAAAAAAAAAAAAAAA 17094861-T-TAAAAAAAAAAAAAAAAAAAAAAAA 29×A+
19436726-AAGAAAGAAAGAAAG-A 17324846-AAGAAAGAAAGAAAG-A +
20105782-C-G 17993902-C-G P5_Dst +
20105783-TATC-T 17993903-TATC-T P5_Dst +
23041198-GAAAAAAAAAAAAA-G 20879312-GAAAAAAAAAAAAA-G 34×A+
23777975-T-A 21616089-T-A Y+
26333-C-G +
13721883-T-C 11566207-T-C *
9231698-AACACACACACACAC-A 9394089-AACACACACACACAC-A 22×AC***
13932167-A-T 11811461-A-T FT311449 Y11×AT*
13932166-T-A 11811460-T-A Y*
22326193-A-G 20164307-A-G DYZ19 *
13466335-A-T 11310659-A-T *
13466342-A-C 11310666-A-C *
22446531-C-A 20284645-C-A DYZ19 *
22306287-G-T 20144401-G-T DYZ19 *
22428185-G-T 20266299-G-T DYZ19 *
13718507-A-C 11562831-A-C *
16868746-C-CAT 14756866-C-CAT 22×AT*
59020428-T-C 56874281-T-C *
13448203-T-TCCATC,TCCATTCCATC 11292527-T-TCCATC,TCCATTCCATC *
28812345-G-A 26666198-G-A *
13707163-T-G 11551487-T-G *
22186713-C-CA,CAA 20024827-C-CA,CAA 16×A*
13571665-AT-A,ATT 11415989-AT-A,ATT 17×T*
23293598-GTATATA-G,GTA 21131712-GTATATA-G,GTA 20×TA*
3403261-CAAA-C,CA 3535220-CAAA-C,CA 30×A*
13468062-A-C 11312386-A-C *
13448910-A-AGTCCACTCCACTCAACTCCC 11293234-A-AGTCCACTCCACTCAACTCCC *
12730473-A-AT,ATT 21×T***
4848354-ATAT-A 4980313-ATAT-A *
5308799-TAGAGAGAG-T,TATATATATATAGAGAGAGAGAG 5440758-TAGAGAGAG-T,TATATATATATAGAGAGAGAGAG 19×AG*
6225989-CTTCT-C,CTTCTTTCTTTCTTTCT 6357948-CTTCT-C,CTTCTTTCTTTCTTTCT IR3_Dst 13×TTCT*
7310571-CT-C,C 7442530-CT-C,C 21×T*
7383851-C-CAAAAAAAAAAAAA,CAAAAAAAAAAAAAA 7515810-C-CAAAAAAAAAAAAA,CAAAAAAAAAAAAAA 24×A*
7723829-GAAGAAAAGAAAAGAA-G,GAAGAA 7855788-GAAGAAAAGAAAAGAA-G,GAAGAA 12×AAGAA*
9347771-AG-A 9510162-AG-A *
9347775-G-T 9510166-G-T Y*
13204307-G-A,GTGATGGTGATGATAATGGTGATAATGACGGTATGATGGTAGTGATAATGGTGATGGTGATGGTGATGATGATGA 11048631-G-A,GTGATGGTGATGATAATGGTGATAATGACGGTATGATGGTAGTGATAATGGTGATGGTGATGGTGATGATGATGA *
13275648-G-GT 11119972-G-GT 8×T*
13448872-TTC-T 11293196-TTC-T *
13448876-T-TAC 11293200-T-TAC *
13468064-G-T 11312388-G-T *
13718751-G-A 11563075-G-A *
13726423-C-G,T 11570747-C-G,T *
14392171-GA-G,G 12271467-GA-G,G 16×A*
22231560-T-A 20069674-T-A DYZ19 *
22255326-G-A 20093440-G-A DYZ19 *
22299685-G-A 20137799-G-A DYZ19 *
22299701-TTA-T 20137815-TTA-T DYZ19 *
22299704-A-AGC 20137818-A-AGC DYZ19 *
22299708-A-G 20137822-A-G BY216792 DYZ19 *
22299710-G-A 20137824-G-A DYZ19 *
22321823-T-A 20159937-T-A DYZ19 *
22326027-G-C 20164141-G-C DYZ19 *
22326140-A-G 20164254-A-G DYZ19 *
22326333-C-A 20164447-C-A DYZ19 *
22327246-G-A 20165360-G-A DYZ19 *
22336670-T-A 20174784-T-A DYZ19 *
22876964-TA-T,T 20715078-TA-T,T 20×A*
27791909-C-CTTCTTA 25645762-C-CTTCTTA P1_Y2 *
56831197-A-ACCATT,ACCATTCCATT 4×CCATT*
56874551-G-A *
56884423-T-TAATATATATATATATATATATATA *
6226098-C-T 6358057-C-T BY42658 IR3_Dst **
13453278-CAGTTTGATTCCATTT-C 11297602-CAGTTTGATTCCATTT-C **
58854275-T-G 56736596-A-C **
28030724-T-TTTTCTTTCTTTCTTTC 25884577-T-TTTTCTTTCTTTCTTTC P1_Y2 14×TTTC**
13453304-C-A 11297628-C-A **
2930319-G-GTT 3062278-G-GTT 26×T**
10969002-A-C **
9040925-A-AAT 9203316-A-AAT 17×AT**
10387327-T-A **
10387336-A-T **
10387339-T-G **
10387342-A-T **
10387345-G-A **
10387348-A-C **
17794226-CTT-C 15682346-CTT-C **
17794234-C-CTT 15682354-C-CTT 4×TCTT**
21569958-T-TAAAAAAAA 19408072-T-TAAAAAAAA 46×A**
56683923-A-G **
56736561-C-G **
20725-C-T **
13748527-C-T 11592851-C-T ***
28812239-G-A 26666092-G-A ***
9330142-G-C 9492533-G-C ***
13734178-A-C 11578502-A-C ***
27644230-C-CA 25498083-C-CA P1_Y2 12×A***
22439450-G-A 20277564-G-A DYZ19 ***
13283394-G-T 11127718-G-T ***
13287080-T-C 11131404-T-C ***
13287081-G-A 11131405-G-A ***
15854157-T-A 13742277-T-A ***
5674964-C-T 5806923-C-T ***
13691024-A-C 11535348-A-C ***
13712548-T-C 11556872-T-C ***
13722677-G-T 11567001-G-T ***
22429970-T-C 20268084-T-C DYZ19 ***
22281736-C-A 20119850-C-A DYZ19 ***
13503528-T-TACACAC 11347852-T-TACACAC ***
13448850-A-T 11293174-A-T ***
13696873-T-A 11541197-T-A ***
58908611-A-T 56682260-T-A ***
13448843-C-G 11293167-C-G ***
58903936-C-T 56686935-G-A ***
22286590-T-C 20124704-T-C DYZ19 ***
22299676-C-A 20137790-C-A DYZ19 ***
28686423-C-A 26540276-C-A 21×A***
14765702-C-A 12653771-C-A ***
14620969-T-C 12509167-T-C ***
14620974-T-A 12509172-T-A ***
16575396-GA-G 14463516-GA-G 10×A***
7075240-CAAA-C 7207199-CAAA-C 17×A***
19130771-TG-T 17018891-TG-T ***
8288845-G-T 8420804-G-T ***
8288850-G-T 8420809-G-T ***
13497062-C-A 11341386-C-A ***
15507817-G-T 13395937-G-T ***
22715144-TAAA-T 20553258-TAAA-T 23×A***
5937236-CTCTCTCTATA-C 6069195-CTCTCTCTATA-C ***
11014947-G-T ***
14490723-C-T 12369992-C-T ***
13364173-T-A 11208497-T-A ***
14490702-G-C 12369971-G-C ***
18402409-T-C 16290529-T-C P6_Gap ***
18402421-T-C 16290541-T-C P6_Gap ***
7223194-CAA-C 7355153-CAA-C 22×A***
21402181-C-CT 19240295-C-CT 34×T***
15575080-C-A 13463200-C-A ***
13696899-C-T 11541223-C-T ***
18679953-G-T 16568073-G-T ***
13449394-C-A 11293718-C-A ***
16340172-G-T 14228292-G-T MF4306 ***
14474496-A-G 12353765-A-G ***
16905896-G-T 14794016-G-T ***
9006862-AT-A 9169253-AT-A 10×T***
56860703-G-A ***
18238964-G-A 16127084-G-A ***
3016678-C-T 3148637-C-T ***
14490668-AT-A 12369937-AT-A ***
7150402-T-A 7282361-T-A ***
13734212-G-A 11578536-G-A ***
13513298-G-T 11357622-G-T ***
13709244-T-C 11553568-T-C ***
4600675-T-C 4732634-T-C ***
14490691-C-A 12369960-C-A ***
22465126-T-A 20303240-T-A DYZ19 ***
13392133-T-G 11236457-T-G ***
27484817-T-C 25338670-T-C P1_Y2 ***
10001596-T-C 10163987-T-C ***
14794569-C-A 12682640-C-A ***
13283402-T-C 11127726-T-C ***
28814553-T-G 26668406-T-G ***
13734673-C-T 11578997-C-T ***
13711749-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G 11556073-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G ***
13694684-A-T 11539008-A-T ***
13719733-T-TGAATG 11564057-T-TGAATG ***
13706077-T-C 11550401-T-C ***
13474800-G-A 11319124-G-A ***
56830019-AT-A ***
17669731-ACACT-A 15557851-ACACT-A ***
56715385-A-C ***
13396171-A-C 11240495-A-C ***
13700765-A-AAT 11545089-A-AAT ***
56834339-A-ACTCTTTT ***
13275860-T-TA 11120184-T-TA ***
56827581-C-CGAGTCCATTCCATGT ***
13713034-C-A 11557358-C-A BY54432 ***
2685834-A-G 2817793-A-G ***
2685848-CTG-C 2817807-CTG-C ***
2685851-T-C 2817810-T-C ***
2688657-G-T 2820616-G-T ***
2690854-T-G 2822813-T-G ***
2690857-C-T 2822816-C-T ***
2690858-A-G 2822817-A-G ***
2690860-T-C 2822819-T-C ***
2813509-T-A 2945468-T-A ***
2899416-G-T 3031375-G-T ***
3016665-G-C 3148624-G-C ***
3016668-T-C 3148627-T-C ***
3016669-G-A 3148628-G-A ***
3016673-T-C 3148632-T-C ***
3016675-T-C 3148634-T-C ***
3256365-C-G 3388324-C-G FTB42154 ***
3256368-C-T 3388327-C-T ***
3259355-T-A 3391314-T-A ***
3681402-A-C 3813361-A-C ***
3723802-A-G 3855761-A-G ***
3899871-A-T 4031830-A-T ***
3922830-G-A 4054789-G-A ***
3930604-T-TAC 4062563-T-TAC ***
4583025-G-GTTT,GTTT 4714984-G-GTTT,GTTT 27×T***
5354731-TATATATATATATATACAC-T,T 5486690-TATATATATATATATACAC-T,T ***
5412006-C-T 5543965-C-T ***
5512898-G-T 5644857-G-T ***
5551184-C-T 5683143-C-T ***
5846265-A-G 5978224-A-G ***
5998308-T-C 6130267-T-C ***
6382129-T-C 6514088-T-C ***
6403141-A-ATTCGTCGGTGTCGTGAAATACCGACGTATATGTTATT 6535100-A-ATTCGTCGGTGTCGTGAAATACCGACGTATATGTTATT ***
6503710-C-G 6635669-C-G ***
6595466-CGAGA-C 6727425-CGAGA-C ***
6684205-C-CAAAAAAAAAA,CAAAAAAAAAA 6816164-C-CAAAAAAAAAA,CAAAAAAAAAA 31×A***
7344388-A-C 7476347-A-C ***
7344393-A-T 7476352-A-T ***
7344396-C-G 7476355-C-G ***
7536135-G-T 7668094-G-T ***
7573711-G-GCA 7705670-G-GCA ***
7573712-TG-T 7705671-TG-T ***
7573716-CA-C 7705675-CA-C ***
7573726-C-T 7705685-C-T ***
7573727-A-G 7705686-A-G ***
7573733-C-T 7705692-C-T ***
7573734-T-C 7705693-T-C ***
7573742-C-T 7705701-C-T ***
7633141-A-T 7765100-A-T ***
7633151-T-A 7765110-T-A ***
8056007-T-A 8187966-T-A ***
8056016-A-C 8187975-A-C FT334217 ***
8056025-C-T 8187984-C-T ***
8056029-T-C 8187988-T-C ***
8056032-T-C 8187991-T-C ***
8175005-G-C 8306964-G-C ***
8276693-C-T 8408652-C-T ***
8276694-A-G 8408653-A-G ***
8276705-C-T 8408664-C-T ***
8473805-T-C 8605764-T-C ***
8473812-T-C 8605771-T-C ***
8827170-C-G 8959129-C-G ***
8827171-T-G 8959130-T-G ***
9053895-A-G 9216286-A-G ***
9175646-G-T 9338037-G-T ***
9178171-A-G 9340562-A-G ***
9202174-T-C 9364565-T-C ***
9210895-T-G 9373286-T-G ***
9235088-G-A 9397479-G-A ***
9296107-C-G 9458498-C-G ***
9298923-G-T 9461314-G-T ***
9301962-C-T 9464353-C-T ***
9308316-C-T 9470707-C-T ***
9327643-G-A 9490034-G-A ***
9339966-C-T 9502357-C-T ***
9364361-A-G 9526752-A-G ***
9364451-C-T 9526842-C-T ***
9389343-A-C 9551734-A-C ***
9444656-T-A 9607047-T-A ***
9472062-T-A 9634453-T-A ***
9472066-T-A 9634457-T-A ***
9497964-A-G 9660355-A-G ***
9497969-G-A 9660360-G-A FT29449 ***
9497974-G-A 9660365-G-A ***
9497975-C-A 9660366-C-A ***
9497984-T-C 9660375-T-C ***
9497988-C-T 9660379-C-T ***
9497990-T-C 9660381-T-C ***
9497991-G-T 9660382-G-T ***
9604549-T-C 9766940-T-C IR3_Prx ***
9783272-A-G 9945663-A-G ***
9924055-C-G 10086446-C-G ***
9924069-G-C 10086460-G-C ***
10001599-C-G 10163990-C-G ***
10001600-C-T 10163991-C-T ***
10082007-A-C 10244398-A-C ***
10082013-A-G 10244404-A-G ***
10632813-CTCCATA-C ***
13204548-A-G 11048872-A-G ***
13252848-T-G 11097172-T-G ***
13261922-G-A 11106246-G-A ***
13263909-A-T 11108233-A-T ***
13286187-C-T 11130511-C-T ***
13286208-C-T 11130532-C-T ***
13286214-C-A 11130538-C-A ***
13336882-C-T 11181206-C-T ***
13351185-T-TA 11195509-T-TA ***
13351186-C-A,CA 11195510-C-A,CA 20×A***
13367455-C-A 11211779-C-A ***
13367469-C-T 11211793-C-T ***
13448865-A-ACTCCACTCCATTCCATTC 11293189-A-ACTCCACTCCATTCCATTC ***
13449379-C-T 11293703-C-T ***
13449380-C-T 11293704-C-T ***
13449399-A-G 11293723-A-G ***
13449947-C-CT 11294271-C-CT ***
13455665-A-T 11299989-A-T ***
13474414-A-C 11318738-A-C ***
13474415-G-A 11318739-G-A ***
13496890-T-C 11341214-T-C ***
13497069-T-C 11341393-T-C ***
13513376-A-G 11357700-A-G ***
13514192-T-C 11358516-T-C ***
13689653-C-A 11533977-C-A ***
13692509-C-G 11536833-C-G ***
13700768-C-A 11545092-C-A ***
13704400-A-C 11548724-A-C ***
13711732-TGGAATGGAATGGAATGGAACGGAATGGAATTAAATGGAAC-T 11556056-TGGAATGGAATGGAATGGAACGGAATGGAATTAAATGGAAC-T ***
13712463-G-C 11556787-G-C ***
13712678-G-T 11557002-G-T ***
13717787-A-C 11562111-A-C ***
13726446-T-A 11570770-T-A ***
13730266-A-C 11574590-A-C ***
13730673-G-A 11574997-G-A ***
13734224-A-G 11578548-A-G ***
13740101-T-A 11584425-T-A ***
13748427-G-A 11592751-G-A ***
13748532-G-C 11592856-G-C ***
13890152-G-C 11769446-G-C ***
13898954-T-C 11778248-T-C ***
13898960-G-A 11778254-G-A ***
14062010-C-CA,CAA 11941304-C-CA,CAA 34×A***
14290154-A-T 12169448-A-T ***
14290156-A-C 12169450-A-C ***
14290176-C-T 12169470-C-T ***
14290181-A-G 12169475-A-G ***
14290184-G-C 12169478-G-C ***
14290186-T-C 12169480-T-C ***
14290188-A-T 12169482-A-T ***
14335609-T-G 12214904-T-G ***
14335623-T-A 12214918-T-A ***
14335630-C-T 12214925-C-T ***
14335632-A-T 12214927-A-T ***
14474486-A-G 12353755-A-G ***
14474488-G-A 12353757-G-A ***
14474491-G-T 12353760-G-T ***
14474493-C-T 12353762-C-T ***
14474505-G-C 12353774-G-C ***
14490677-C-T 12369946-C-T ***
14490678-A-C 12369947-A-C ***
14490693-A-G 12369962-A-G ***
14490715-A-G 12369984-A-G ***
14490727-C-T 12369996-C-T ***
14794555-A-G 12682626-A-G ***
14794557-T-G 12682628-T-G ***
14794559-C-T 12682630-C-T FT21638 ***
14794566-A-G 12682637-A-G ***
14794571-T-C 12682642-T-C ***
14794573-T-C 12682644-T-C ***
14794574-G-A 12682645-G-A ***
14981978-G-T 12870046-G-T ***
14981980-G-T 12870048-G-T ***
15102641-A-C 12990729-A-C ***
15102644-A-T 12990732-A-T ***
15122000-T-G 13010087-T-G ***
15260684-C-CTTTTTTTTTTT 13148768-C-CTTTTTTTTTTT 25×T***
15491941-G-GTATATA 13380061-G-GTATATA 19×TA***
15507813-C-A 13395933-C-A ***
15507815-G-T 13395935-G-T ***
15575043-G-A 13463163-G-A ***
15575044-C-T 13463164-C-T ***
15575070-T-C 13463190-T-C ***
15760860-T-C 13648980-T-C ***
15760869-A-C 13648989-A-C ***
16215917-A-G 14104037-A-G ***
16215926-G-A 14104046-G-A ***
16642970-G-GAAATAATATAT 14531090-G-GAAATAATATAT ***
16666079-A-AT,ATT 14554199-A-AT,ATT 25×T***
17102661-GC-G 14990781-GC-G ***
17192585-T-C 15080705-T-C ***
17192594-A-C 15080714-A-C ***
17192598-A-G 15080718-A-G ***
17192605-T-G 15080725-T-G ***
17192606-C-G 15080726-C-G ***
17192607-C-G 15080727-C-G ***
17192616-A-C 15080736-A-C ***
17192617-G-A 15080737-G-A ***
17192625-A-T 15080745-A-T ***
17192627-AAAAAAG-A 15080747-AAAAAAG-A ***
17669743-T-A 15557863-T-A ***
17669745-G-A 15557865-G-A ***
17794253-G-T,T 15682373-G-T,T 10×TTCT***
17834836-T-C 15722956-T-C ***
17835032-C-T 15723152-C-T ***
18158344-G-T 16046464-G-T ***
18158345-C-T 16046465-C-T ***
18238968-G-C 16127088-G-C ***
18238972-T-C 16127092-T-C ***
18238977-T-C 16127097-T-C ***
18238984-T-C 16127104-T-C ***
18238992-A-C 16127112-A-C ***
18402398-T-C 16290518-T-C P6_Gap ***
18626582-C-CT,CTT 16514702-C-CT,CTT 25×T***
18702761-T-A 16590881-T-A ***
18702763-G-A 16590883-G-A ***
18797355-A-C 16685475-A-C ***
19030687-CTGTTG-C 16918807-CTGTTG-C ***
19030693-CA-C 16918813-CA-C ***
19030698-GCAATTT-G 16918818-GCAATTT-G ***
19126436-C-CAAAAAAAAAAAA,CAAAAAAAAAAAA 17014556-C-CAAAAAAAAAAAA,CAAAAAAAAAAAA 25×A***
19215271-C-T 17103391-C-T ***
19215272-A-G 17103392-A-G ***
19215280-A-C 17103400-A-C ***
19215281-G-A 17103401-G-A ***
19277831-T-C 17165951-T-C ***
19277834-T-C 17165954-T-C ***
19277841-A-G 17165961-A-G ***
19277842-A-G 17165962-A-G ***
19277853-C-T 17165973-C-T ***
19277854-C-G 17165974-C-G ***
19318206-TG-T 17206326-TG-T ***
19501682-CA-C 17389802-CA-C ***
19501686-T-A 17389806-T-A ***
19501692-A-G 17389812-A-G ***
21284210-TAAA-T 19122324-TAAA-T 13×A***
21464536-C-CAAA,CAAAAA 19302650-C-CAAA,CAAAAA 19×A***
21629739-T-C 19467853-T-C ***
22017712-A-G 19855826-A-G ***
22017713-T-C 19855827-T-C ***
22238335-CTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGACACTCACCG-C 20076449-CTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGACACTCACCG-C DYZ19 ***
22281738-G-T 20119852-G-T DYZ19 ***
22299672-T-G 20137786-T-G DYZ19 ***
22299675-A-C 20137789-A-C DYZ19 ***
22302368-T-G 20140482-T-G BY216925 DYZ19 ***
22326248-C-T 20164362-C-T DYZ19 ***
22429959-G-A 20268073-G-A DYZ19 ***
22431251-T-C 20269365-T-C DYZ19 ***
22431254-A-C 20269368-A-C DYZ19 ***
22431263-G-A 20269377-G-A DYZ19 ***
22431264-C-A 20269378-C-A DYZ19 ***
22431271-C-A 20269385-C-A DYZ19 ***
22438273-T-G 20276387-T-G DYZ19 ***
22438280-T-G 20276394-T-G DYZ19 ***
22441945-G-A 20280059-G-A DYZ19 ***
22459086-A-G 20297200-A-G DYZ19 ***
22620389-T-A 20458503-T-A ***
22620395-G-A 20458509-G-A ***
22620405-C-A 20458519-C-A ***
22638247-G-A 20476361-G-A ***
22641558-C-T 20479672-C-T ***
22641565-A-C 20479679-A-C ***
22914674-CAA-C,CAAA 20752788-CAA-C,CAAA 27×A***
23109515-C-T 20947629-C-T ***
23194817-C-T 21032931-C-T 24×T***
23702350-A-G 21540464-A-G ***
27506514-TC-T 25360367-TC-T P1_Y2 ***
28700764-TACACACACACACACACACACACACAC-T,TACACACACACACACACACACACAC 26554617-TACACACACACACACACACACACACAC-T,TACACACACACACACACACACACAC 13×AC***
28790863-A-G 26644716-A-G ***
28796127-T-C 26649980-T-C ***
28806425-CG-C 26660278-CG-C ***
28810087-T-C 26663940-T-C ***
28818438-AGTCAT-A 26672291-AGTCAT-A ***
56677897-TG-T ***
56678548-G-T ***
56686883-C-A ***
56686918-T-A ***
56689042-T-A ***
56691859-T-C ***
56692328-T-A ***
56692377-G-A ***
56706853-G-A ***
56732002-A-T ***
56756499-TCA-T ***
56756502-TGGGATGGC-T ***
56769565-G-A ***
56827939-C-CATTCCATTAAATTCGAATCCATTCCATTCCATTCCATTCT ***
56830332-CCATTCCATTCCAT-C ***
56834392-CCA-C ***
56834396-TCCTCTCCACTCCA-T ***
56861811-T-TTAAAAAA ***
56863510-T-G ***
56863512-C-T ***
56865486-A-T ***
56871655-A-ATATATATATATATATAT ***
56874259-A-C ***
56874260-G-A ***
34440-G-T ***
35145-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.