Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > BY4245 > BY3504 > 15984654-CAT-C > BY3478 > BY14173 > Y100302

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
3449517-C-G 3581476-C-G A+
56829289-G-A A*
20727692-G-GT 18565806-G-GT P4_Prx 9×TA*
13825470-C-A 11704764-C-A A*
18335987-C-T 16224107-C-T P6_Prx A*
56862378-G-T A*
19672264-C-A 17560384-C-A P5_Prx A*
19851160-G-C 17739280-G-C P5_Prx A*
20015195-A-T 17903315-A-T P5_Prx A*
20775175-G-GA 18613289-G-GA P4_Prx 10×AA*
26185243-C-A 24039096-C-A P1_Y1 A*
20733060-A-G 18571174-A-G P4_Prx A*
8354681-C-A 8486640-C-A FTB75621 YY+
9887881-G-T 10050272-G-T FTB6687 Y+
9832203-C-A 9994594-C-A FTB75789 YY+
24388977-G-T 22242830-G-T FTB8320 +
8681841-C-G 8813800-C-G FTB75688 YY+
8454041-T-G 8586000-T-G FTB6518 YY+
7327467-T-A 7459426-T-A FTB6303 YY+
7670130-A-G 7802089-A-G FTB6347 YY+
13715280-G-C 11559604-G-C +
7327341-T-C 7459300-T-C FTB6302 YY+
6358769-C-T 6490728-C-T FTB85986 +
6065849-G-A 6197808-G-A FTA43073 +
4659258-G-A 4791217-G-A FTB8657 +
4324675-A-G 4456634-A-G FTB79391 +
13538641-C-T 11382965-C-T +
13717296-G-C 11561620-G-C +
21396416-G-A 19234530-G-A FTB77063 YY+
16868874-G-A 14756994-G-A FTB76405 YY+
22070088-T-C 19908202-T-C FTB8044 YY+
22079792-G-C 19917906-G-C FTB8046 YY+
22513045-C-T 20351159-C-T FTB8970 Y+
18998334-C-T 16886454-C-T FTB7683 YY+
18917573-GT-G 16805693-GT-G 8×T+
17232056-G-A 15120176-G-A FTB7362 YY+
16615714-C-T 14503834-C-T YY+
11657844-T-A FTB79392 +
16561124-A-G 14449244-A-G YY+
23053705-A-T 20891819-A-T FTB8171 YY+
16075788-A-G 13963908-A-G FTB76258 Y+
2820932-G-A 2952891-G-A FTB6156 YY+
23420862-T-A 21258976-T-A FTB8251 YY+
13844850-G-C 11724144-G-C FTB8956 +
13844790-G-A 11724084-G-A FTB8955 +
20497373-CCTTT-C 18335487-CCTTT-C P5_Dst 12×CTTT+
6041962-C-A 6173921-C-A +
10839026-A-C +
18593579-ATGTG-A 16481699-ATGTG-A 14×TG+
9993280-C-T 10155671-C-T Y+
8436136-G-A 8568095-G-A BY72730 YY+
3475225-A-G 3607184-A-G *
19492324-A-C 17380444-A-C Y*
15185131-T-G 13073217-T-G **
14565522-TG-T 12453722-TG-T **
19604803-C-A 17492923-C-A BY211858 P5_Prx **
13453129-C-A 11297453-C-A **
19719327-C-CAAA 17607447-C-CAAA P5_Prx 17×A**
20022423-C-A 17910543-C-A P5_Prx **
19852646-A-C 17740766-A-C P5_Prx **
9220256-C-A 9382647-C-A **
20771712-CAG-C 18609826-CAG-C P4_Prx **
17071226-GGAAA-G 14959346-GGAAA-G 5×GAAA**
23093186-A-G 20931300-A-G **
21717648-ATGTG-A 19555762-ATGTG-A 17×TG**
20579345-TACACAC-T 18417459-TACACAC-T P5_Dst 16×AC**
16215289-T-C 14103409-T-C **
13461460-C-A 11305784-C-A **
13461451-C-A 11305775-C-A **
13222119-TGGGA-T 11066443-TGGGA-T **
26366791-G-T 24220644-G-T P1_Y1 **
13461463-A-T 11305787-A-T **
19745476-T-C 17633596-T-C P5_Prx **
11020970-C-G ***
14025562-AAAAGAAAG-A 11904856-AAAAGAAAG-A 12×AAAG***
13458036-CACTGT-A 11302360-CACTGT-A ***
18454880-C-CCTTTCTTT 16343000-C-CCTTTCTTT P6_Dst 13×CTTT***
13853158-G-A 11732452-G-A ***
13825493-A-T 11704787-A-T ***
17474945-C-CT 15363065-C-CT 15×T***
13260592-CTTTT-C,CTTT 11104916-CTTTT-C,CTTT 14×T***
13460588-A-G 11304912-A-G ***
23293598-GTATATA-G,GTA 21131712-GTATATA-G,GTA 20×TA***
5486876-CAAAAA-C 5618835-CAAAAA-C 21×A***
13825487-T-C 11704781-T-C ***
2806234-TAG-T 2938193-TAG-T ***
13825542-G-A 11704836-G-A ***
10801689-T-G ***
13825535-A-G 11704829-A-G ***
8501864-A-AT 8633823-A-AT 8×T***
11643715-AATGGA-A,AATGG ***
13825502-C-G 11704796-C-G FT20642 ***
23415310-ATG-A,ATA 21253424-ATG-A,ATA ***
13470117-C-T 11314441-C-T ***
5937240-CTC-C,CTA 6069199-CTC-C,CTA ***
17219870-T-C 15107990-T-C ***
23415300-G-T 21253414-G-T ***
13468321-G-T 11312645-G-T ***
17085721-C-CTT 14973841-C-CTT 20×T***
7223269-G-GT 7355228-G-GT 13×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B8048321540557196816318421778
Used in age calculations1540557196816318421778
Counts of SNPs2419
Variant counts last updated 2022-11-24 03:15:11.

Big Tree Main Page