Henderson

YDW-Kane-BY3: GJ35XEKY
MDKA Birth: Scotland 1857

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > FGC15710 > CTS10029 > BY3190 > FGC29721 > FT33763 > FT128116

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRYDW-Kane-BY3
GJ35XEKY
23801733-C-CAAAA 21639847-C-CAAAA 31×A+
21402181-C-CTTTTTTT 19240295-C-CTTTTTTT 34×T+
10961479-C-T +
11643726-T-TTGGAA +
10961478-A-T +
10646051-ACCATT-A +
10756735-AT-A +
10756741-C-A +
10756744-C-CCT +
10756746-A-C +
10756748-C-T +
10756749-GT-G +
10756753-A-T +
10756756-ACGCCT-A +
10756767-C-T +
10760350-T-TACTCCATTCCACTCCACTCCACTTCATTCCATTACACTGCATTCCGAATGATTCCACTACTTTCCATTCCATTTCACTCCATTCCACTCCATTCCATTCCACTGC +
10763233-T-TTTCATTCCACTCCACTCCATTCCACTCCACTCCATTCCATTCCATTCCACTTCATTCCATTCTATTCCATTACATTCCTTTCCAC +
10985416-T-TTCCATTCCATTCCCTTCCAATCCACTCTATTCCATTCCACTCCACTCCATTCCACTCCACTCCTCTCCATTCCACTCCACTCCTCTCCATTCCACTCCACTCCAGTCAAC +
10961491-C-T +
10969985-A-AC +
10969986-T-TTCACTCCAC +
22802868-A-ATTTTTT 20640982-A-ATTTTTT 32×T+
10958315-ATT-A +
22287953-G-A 20126067-G-A DYZ19 +
21112410-TACAC-T 18950524-TACAC-T 17×AC*
27981744-AT-A 25835597-AT-A P1_Y2 10×T*
23298091-C-CT 21136205-C-CT 10×T*
13450443-C-G 11294767-C-G *
13478350-G-A 11322674-G-A *
22723386-C-CAA 20561500-C-CAA 17×A*
8549032-G-GTT 8680991-G-GTT 23×T*
16051847-TA-T 13939967-TA-T 10×A*
13489708-G-A 11334032-G-A *
21438785-TAAA-T 19276899-TAAA-T 31×A*
13489692-A-G 11334016-A-G *
7534392-G-GTTT 7666351-G-GTTT 13×T*
9972630-AT-A 10135021-AT-A *
13489705-A-T 11334029-A-T *
4044971-A-T 4176930-A-T FGC81652 *
13489675-G-C 11333999-G-C *
6863818-CTTTTTTTT-C 6995777-CTTTTTTTT-C 21×T*
2666449-T-TAC 2798408-T-TAC 13×AC*
13489659-C-T 11333983-C-T *
2940194-A-T 3072153-A-T *
3193883-T-C 3325842-T-C *
3915369-G-A 4047328-G-A FT308096 *
3928845-C-A 4060804-C-A *
3932521-G-A 4064480-G-A *
3945638-T-G 4077597-T-G *
4191376-C-G 4323335-C-G *
4303101-G-C 4435060-G-C *
4712855-CA-C 4844814-CA-C 10×A*
5468306-A-G 5600265-A-G *
5842532-A-C 5974491-A-C *
5906873-GCA-G 6038832-GCA-G 9×CA*
6445011-C-G 6576970-C-G *
6929159-G-T 7061118-G-T Y*
8417400-CTG-C 8549359-CTG-C *
8561618-CCA-C 8693577-CCA-C 8×CA*
8883602-AAC-A 9015561-AAC-A 8×AC*
18125730-GGAAA-G 16013850-GGAAA-G 6×GAAA*
18708972-GTA-G 16597092-GTA-G *
19131054-CAG-C 17019174-CAG-C *
24573423-CTT-C 22427276-CTT-C P3_t2 21×T*
3889019-CTT-C 4020978-CTT-C 15×T*
3258964-T-C 3390923-T-C *
3319786-ATC-A 3451745-ATC-A 8×TC*
3915112-A-G 4047071-A-G *
4499916-T-C 4631875-T-C *
4554311-CAGGG-C 4686270-CAGGG-C 6×AGGG*
5302561-ATC-A 5434520-ATC-A 9×TC*
6929160-A-T 7061119-A-T Y*
13349048-C-T 11193372-C-T FGC16807 *
13477239-C-T 11321563-C-T *
13628027-C-CTA 11472351-C-CTA *
17250378-CCT-C 15138498-CCT-C *
18924453-AAC-A 16812573-AAC-A 8×AC*
18984948-TTC-T 16873068-TTC-T *
19409391-C-CAA 17297511-C-CAA 22×A*
22163646-ATG-A 20001760-ATG-A *
28470598-CTA-C 26324451-CTA-C *
58975626-C-T 56829479-C-T *
59009291-T-A 56863144-T-A *
14604590-CTTTTTTT-C 12492792-CTTTTTTT-C 21×T*
4382449-CAAAA-C 4514408-CAAAA-C 17×A*
22052900-C-CA 19891014-C-CA BY33010 10×A*
18984861-G-GA 16872981-G-GA 10×A*
3975905-A-AT 4107864-A-AT 10×T*
13462324-G-A 11306648-G-A *
13472035-A-G 11316359-A-G *
13489717-C-T 11334041-C-T *
21721165-CA-C 19559279-CA-C 10×A*
18804474-AAGAG-A,AAG 16692594-AAGAG-A,AAG 26×AG*
13477233-G-A 11321557-G-A *
14809664-G-GT 12697735-G-GT 10×T*
21034224-A-AT 18872338-A-AT 9×T*
58982008-A-T 56835861-A-T *
8160607-G-GA 8292566-G-GA 10×A*
13942606-TAC-T 11821900-TAC-T 9×AC*
6774803-CTT-C 6906762-CTT-C 12×T*
13450000-CTCCACTCCACTCCCG-C 11294324-CTCCACTCCACTCCCG-C *
3009913-C-T 3141872-C-T Y133940 FGC74230 *
9583457-CT-C 9745848-CT-C IR3_Prx 10×T*
23234708-CTTCTTTCT-C,CTTCT 21072822-CTTCTTTCT-C,CTTCT 17×TTCT*
4071991-AACAC-A 4203950-AACAC-A 14×AC*
13489643-C-T 11333967-C-T *
4511163-CA-C 4643122-CA-C 26×A*
7235770-A-AT 7367729-A-AT 10×T*
58979606-A-T 56833459-A-T *
6843943-CGTGT-C 6975902-CGTGT-C 13×GT*
13259210-G-T 11103534-G-T *
6179553-G-T 6311512-G-T IR3_Dst *
28805303-G-A 26659156-G-A *
4505403-A-G 4637362-A-G *
56830319-A-ATTCCACTCCATTCCT *
6928381-CT-C 7060340-CT-C 10×T*
18839340-T-C 16727460-T-C YY*
23590764-CA-C,CAA 21428878-CA-C,CAA 15×A*
9784808-G-GA 9947199-G-GA 11×A*
19352848-G-GT 17240968-G-GT 9×T*
14224265-CT-C 12103559-CT-C 10×T*
21224779-AT-A,ATT 19062893-AT-A,ATT 19×T*
3990664-CAAAA-C 4122623-CAAAA-C 18×A*
13478209-C-T 11322533-C-T *
13478280-C-T 11322604-C-T *
14054983-G-GA 11934277-G-GA 10×A*
3063726-T-TA 3195685-T-TA 13×A*
13489525-C-T 11333849-C-T *
2861534-C-CA 2993493-C-CA 25×A*
16590873-C-CAA 14478993-C-CAA 17×A*
18365541-ATGTG-A,ATG 16253661-ATGTG-A,ATG P6_Prx 20×TG*
6874882-CA-C 7006841-CA-C 9×A*
19395643-T-TA 17283763-T-TA 10×A*
9139765-G-GT 9302156-G-GT 9×T*
6890291-G-GTT 7022250-G-GTT 13×T*
18994617-GGA-G 16882737-GGA-G *
17092796-ATT-A 14980916-ATT-A 13×T*
10661716-T-C *
8309492-AT-A 8441451-AT-A 10×T*
4213860-ATG-A 4345819-ATG-A 12×TG*
3545723-C-CA 3677682-C-CA 11×A*
21415991-G-GA 19254105-G-GA 10×A*
3816689-CTT-C 3948648-CTT-C 12×T*
6493953-CAAA-C 6625912-CAAA-C 19×A*
17994874-C-CA 15882994-C-CA P7_Prx 39×A*
21623809-G-T 19461923-G-T YY*
23856895-G-GA 21695009-G-GA 10×A*
10661710-A-ACTTTAC *
10661721-T-C *
10661731-C-T *
19042179-CAAAAA-C 16930299-CAAAAA-C 17×A*
10662970-C-A *
13458729-T-A 11303053-T-A *
13489806-C-A 11334130-C-A *
22101029-AC-A 19939143-AC-A *
17284532-CTTT-C,CTT 15172652-CTTT-C,CTT 21×T*
20569653-G-T 18407767-G-T P5_Dst *
3303468-A-AT 3435427-A-AT 10×T*
15969956-TAAA-T,TAAAA 13858076-TAAA-T,TAAAA 20×A*
3706014-T-TA 3837973-T-TA 10×A*
3620188-G-GT 3752147-G-GT 10×T*
9537704-C-CTG 9700095-C-CTG IR3_Prx 8×TG*
12869906-TTTCCTTCCTTCC-T 14×TTCC*
15593274-CA-C,CAA 13481394-CA-C,CAA 23×A*
17678621-CTT-C,CT 15566741-CTT-C,CT 26×T*
4460910-TTCTC-T 4592869-TTCTC-T *
5854566-CAA-C 5986525-CAA-C 16×A*
14693111-CT-C 12581177-CT-C 8×T*
3079561-TAAA-T 3211520-TAAA-T 18×A*
4907850-AT-A 5039809-AT-A 10×T*
13690157-A-C 11534481-A-C *
15592550-CAA-C,CA 13480670-CAA-C,CA 22×A*
20840711-CA-C 18678825-CA-C P4_Gap 8×A*
13489850-C-A 11334174-C-A *
56871593-A-G *
6179588-C-A 6311547-C-A IR3_Dst *
13489802-C-A 11334126-C-A *
13489814-G-C 11334138-G-C *
13246182-G-C 11090506-G-C *
8052324-C-A 8184283-C-A Y*
14068352-CT-C 11947646-CT-C 9×T*
5111539-A-AT 5243498-A-AT 12×T*
13605019-C-CA 11449343-C-CA 10×A*
10889373-A-C *
6179571-C-A 6311530-C-A IR3_Dst *
6179584-G-T 6311543-G-T IR3_Dst *
10678022-C-CG *
10678024-T-TCCACTCCAC *
56829179-C-A *
24496621-G-GA 22350474-G-GA BY41286 9×A*
13349045-T-G 11193369-T-G *
13374277-GA-G 11218601-GA-G 13×A*
28805688-G-C 26659541-G-C *
28805690-G-A 26659543-G-A *
19034568-G-GA 16922688-G-GA 9×A*
13474089-C-A 11318413-C-A *
4834245-T-TA,TAA 4966204-T-TA,TAA 23×A*
5858687-C-T 5990646-C-T FGC69304 *
4571069-CAA-C 4703028-CAA-C 13×A*
5528961-T-TA 5660920-T-TA 11×A*
56829507-GTCCAT-G,GTCCATTCCAT 4×TCCAT*
56858546-TTA-T *
10992268-TTCCAC-T *
3271448-T-C 3403407-T-C *
22019213-AT-A 19857327-AT-A 9×T*
5772552-C-CT 5904511-C-CT 10×T*
13489672-G-T 11333996-G-T *
20569648-G-T 18407762-G-T P5_Dst *
22551456-T-C 20389570-T-C YY*
9798081-C-A 9960472-C-A YY*
24381391-C-CA 22235244-C-CA 11×A*
5900371-A-G 6032330-A-G *
17669635-T-C 15557755-T-C YY*
14552175-T-TAA 12440376-T-TAA 13×A*
56855383-TC-T *
8182205-CAA-C,CAAA 8314164-CAA-C,CAAA 18×A*
18447651-C-A 16335771-C-A P6_Dst *
13462334-C-CCAAT 11306658-C-CCAAT *
56833283-CTCCATTCCATTCCACTCCAT-C *
19609407-G-T 17497527-G-T P5_Prx Y*
3912233-C-CT 4044192-C-CT 14×T*
9127506-CT-C,CTT 9289897-CT-C,CTT 22×T*
6179583-A-T 6311542-A-T IR3_Dst *
22920605-CTTTTT-C,CTTT 20758719-CTTTTT-C,CTTT 25×T*
6024584-G-A 6156543-G-A *
8616329-CT-C 8748288-CT-C 9×T*
7244754-TA-T 7376713-TA-T 10×A*
28596698-G-GTTT 26450551-G-GTTT 24×T*
10673916-TCCATTCCATTCCATTCCATTCCATTGCACC-T *
14635669-G-A 12523738-G-A YY*
10663429-TCACTCCAC-T *
13483387-C-G 11327711-C-G *
5598178-G-GT 5730137-G-GT 10×T*
16010265-C-A 13898385-C-A Y*
13474104-C-G 11318428-C-G *
13488486-A-C 11332810-A-C *
13488500-A-T 11332824-A-T *
13472034-C-T 11316358-C-T *
5399476-G-A 5531435-G-A *
5986595-GTT-G 6118554-GTT-G 28×T*
27022287-CT-C 24876140-CT-C P1_r4 9×T*
6076711-C-T 6208670-C-T FGC69308 *
13464466-G-C 11308790-G-C *
13464475-G-A 11308799-G-A *
24242331-C-CA 22096184-C-CA P3_b1 16×A*
13349042-T-C 11193366-T-C *
3451063-C-G 3583022-C-G *
3076069-CTTTT-C,CTTT 3208028-CTTTT-C,CTTT 25×T*
10662968-TC-T *
13609583-G-T 11453907-G-T FT446450 *
10889371-T-TCCTCC *
15221083-AT-A,ATT 13109169-AT-A,ATT 18×T*
13447918-T-G 11292242-T-G *
5486876-CAAAAA-C 5618835-CAAAAA-C 21×A*
2762705-CT-C,CTT 2894664-CT-C,CTT 16×T*
28545016-CAA-C,CA 26398869-CAA-C,CA 22×A*
7282159-CTTTT-C,CTTT 7414118-CTTTT-C,CTTT 22×T*
58975519-T-G 56829372-T-G *
18818389-GA-G,GAA 16706509-GA-G,GAA 17×A*
22540536-G-A 20378650-G-A Y*
15138012-CT-C,CTTT 13026099-CT-C,CTTT 15×T*
3606672-GTT-G,GTTT 3738631-GTT-G,GTTT 19×T*
56835435-C-A *
5925524-T-C 6057483-T-C *
4424377-GT-G,GTT 4556336-GT-G,GTT 18×T*
28813077-A-T 26666930-A-T *
9910485-G-T 10072876-G-T Y*
3532154-T-C 3664113-T-C *
28817647-AGGAATGGAAT-A,AGGAAT 26671500-AGGAATGGAAT-A,AGGAAT 9×GGAAT*
5204641-CA-C,CAA 5336600-CA-C,CAA 22×A*
21838971-G-GA,GAA 19677085-G-GA,GAA 20×A*
20500942-GA-G,GAA 18339056-GA-G,GAA P5_Dst 15×A*
22876964-T-TAAA 20715078-T-TAAA 20×A*
5815594-CA-C,CAA 5947553-CA-C,CAA 22×A*
18019832-CTTT-C,CT 15907952-CTTT-C,CT 22×T*
13258558-CT-C,CTT 11102882-CT-C,CTT 20×T*
2918624-T-C 3050583-T-C *
15260684-CTT-C,CTTT 13148768-CTT-C,CTTT 25×T*
20778689-TACAC-T 18616803-TACAC-T P4_Prx 13×AC*
4973442-T-C 5105401-T-C *
28747705-ATTT-A,AT 26601558-ATTT-A,AT 27×T*
14286784-CTT-C,CTTT 12166078-CTT-C,CTTT 22×T*
3403267-A-C 3535226-A-C *
3271838-T-C 3403797-T-C *
10632709-A-C,C *
10632714-CA-C,C *
10632717-G-C,C *
10632738-ATTCCATCCATATCATTCCATTCCC-A,A *
10632765-CAACTG-C,C *
10632777-ACTCCTGTCCTCTTCT-A,A *
10661491-TTTCAC-T *
10661712-TC-T *
10661735-AC-A *
10661737-TTGACTTCAC-T *
10663426-ACC-A *
10663651-CAACT-C *
10663657-CACTCCA-C *
10663685-TC-T *
10663688-ATTCC-A *
10670971-CTTTCCACTCCATTCCATTCT-C *
10763153-T-TTCCATTCCACTCCACTCCAC,TTCCATTCCACTCCACTCCAC *
13448237-C-CT 11292561-C-CT *
28787565-GAGGAGTGGAGTGGAATGGACTGGAGTGGAGTGGATTGGAGTGGAA-G 26641418-GAGGAGTGGAGTGGAATGGACTGGAGTGGAGTGGATTGGAGTGGAA-G *
56827753-CCA-C *
56827756-TTCCATTCCAGTCC-T *
56834400-C-CCTGTCCACTCCATTCCACTCCACTTCACTCCAT *
56834790-C-CATTCCACTCCACTCCATTCA *
56835906-C-CTCCACTCCACTCAAT *
56835940-A-ACTCCACTCAATTCCACTCCACTCAATTCCACTCCACTCAATTCCACTCCACTCTG *
56858543-TAG-T *
10676900-CCACTA-C *
10884836-GC-G *
10884838-TTTCCATTCC-T *
10921961-T-TCC *
56844846-T-A *
10661296-T-TCCACTC *
10693720-A-T *
13451490-G-A,A 11295814-G-A,A *
13472030-A-T 11316354-A-T *
10661330-C-CCCATCCCATCCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT *
56871651-TGAG-T *
13449513-A-ATT 11293837-A-ATT *
13449514-C-CCAT,T 11293838-C-CCAT,T *
56825934-T-TAATTCCATTCGATTG *
56827971-TTCCAGTCCATTCCTTTCAAGTCCATTCAATTCCATTCCGTTCGAATTCATTCCATTCCATTCCATTTGATTCCATTCCATGCCATTCCATTCAATTCAATTCCATTCGATTCCATTCCATTCAAATCAATTCCATTCCAATCCATTCCATTCCATTCTATTCCATTCCATTCCAC-T *
56833472-C-CAGTA *
56833474-AT-A *
56833476-AACC-A *
10889250-TGCCA-T *
10889255-TGCCATG-T *
13464423-C-A 11308747-C-A *
13609586-A-C 11453910-A-C FT446451 *
56826847-G-GAGACTGTACT *
56834817-C-CTCCACTCCAT *
7258755-CAA-C,CA 7390714-CAA-C,CA 25×A*
3271443-CCCT-C 3403402-CCCT-C *
13450100-TCCACTCCACTCCACC-T 11294424-TCCACTCCACTCCACC-T *
22436387-TTTACAGCAATTAAAGGTGTTATGTCCAGAGTTTGTTCCTTCAGATGTGTCCAGAGTTTCTTCCTTCTGGCAGGTTCATGGGCTTGCTCACTTCAAGAATGAAGCTGCAGACCTTTACGGTGAGTG-T 20274501-TTTACAGCAATTAAAGGTGTTATGTCCAGAGTTTGTTCCTTCAGATGTGTCCAGAGTTTCTTCCTTCTGGCAGGTTCATGGGCTTGCTCACTTCAAGAATGAAGCTGCAGACCTTTACGGTGAGTG-T DYZ19 *
3765760-CA-C 3897719-CA-C 12×A*
13488533-C-G 11332857-C-G *
13488576-TCC-T 11332900-TCC-T *
13488580-A-AAG 11332904-A-AAG *
13489564-C-G 11333888-C-G *
4200055-C-CAAA 4332014-C-CAAA 23×A*
10632802-ATTCCATTCCACTCCAT-A *
10632823-ATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCC-A *
16809372-TGATA-T,T 14697492-TGATA-T,T 11×GATA*
13464434-T-C 11308758-T-C *
7128621-CGTGTGT-C,CGTGT 7260580-CGTGTGT-C,CGTGT 23×GT*
22048230-CA-C,C 19886344-CA-C,C 15×A*
56835847-C-CCACTCCATTCCACT *
10632799-TC-T *
26480505-CA-C 24334358-CA-C P1_Y1 9×A*
21552296-C-CTA 19390410-C-CTA *
17187634-C-CAAA 15075754-C-CAAA 15×A*
3643269-C-CTT 3775228-C-CTT 14×T*
11294426-C- *
11294441-CATCCCATCCCATTCT- *
4327219-C-A 4459178-C-A *
4327220-T-A 4459179-T-A *
13349013-G-GTT 11193337-G-GTT *
13349015-TAG-T 11193339-TAG-T *
2888903-G-T 3020862-G-T YY*
6929163-TAGGATAG-T 7061122-TAGGATAG-T *
8568465-GTT-G,GTTT 8700424-GTT-G,GTTT 22×T*
16244792-GGTGT-G,G 14132912-GGTGT-G,G 16×GT*
13448341-A-ACTCCATTCCCCTCCG 11292665-A-ACTCCATTCCCCTCCG *
6482918-G-GAA 6614877-G-GAA *
6482920-T-TC 6614879-T-TC *
6482922-A-AT 6614881-A-AT *
6482924-A-T 6614883-A-T *
6482925-CA-C 6614884-CA-C *
6482928-AG-A 6614887-AG-A *
6482930-ATT-A 6614889-ATT-A *
3980500-G-T 4112459-G-T *
17662010-ATG-A,A 15550130-ATG-A,A 21×TG*
56834395-C-CTCCACTCCACTCCATTCCACTCCTATCCACTCCAT *
18679925-CAAA-C,CAAAA 16568045-CAAA-C,CAAAA 25×A*
13489686-CAT-C 11334010-CAT-C *
56832539-C-A,CTCCAATCCATTCCAT *
56834380-T-TTCCATTCCATTCCAC,TTCCGTTCAATTCCTC *
3567571-C-T 3699530-C-T 10×CT*
14331131-CTTT-C,CTTTT 12210425-CTTT-C,CTTTT 25×T*
13489628-A-G 11333952-A-G *
17662167-GTAGATAGATAGATAGA-G,GTAGA 15550287-GTAGATAGATAGATAGA-G,GTAGA 16×TAGA*
7141147-T- *
13448292-C-A 11292616-C-A *
22143672-GT-G 19981786-GT-G *
22143677-T-TA 19981791-T-TA *
13489759-C-T 11334083-C-T *
13267849-A-ACCTCT 11112173-A-ACCTCT *
17951299-AT-A,ATT 15839419-AT-A,ATT 25×T*
4675104-A-ATT 4807063-A-ATT 12×T*
4487836-C-A 4619795-C-A *
2685826-T-C 2817785-T-C YY*
2753055-GTCTT-G 2885014-GTCTT-G *
2753060-T-TAAAG 2885019-T-TAAAG *
2795559-G-GTTTTTTTTTTT 2927518-G-GTTTTTTTTTTT 24×T*
2982950-A-G 3114909-A-G *
2982953-C-T 3114912-C-T *
3563094-T-TA 3695053-T-TA 8×A*
3804631-A-G 3936590-A-G *
3963833-CA-C,CAA 4095792-CA-C,CAA 22×A*
4019663-C-A 4151622-C-A *
4058269-A-G 4190228-A-G *
4188301-G-A 4320260-G-A *
4470974-G-A 4602933-G-A *
4547916-A-G 4679875-A-G *
4734652-A-G 4866611-A-G *
4773508-A-T 4905467-A-T *
4880731-TGA-T 5012690-TGA-T *
4880733-A-ATTT 5012692-A-ATTT *
4880735-A-T 5012694-A-T *
4973433-C-T 5105392-C-T *
5028225-T-C 5160184-T-C *
5544261-A-G 5676220-A-G *
5554632-T-G 5686591-T-G *
5554633-C-A 5686592-C-A *
5554640-TGGCTCTTTGCTTG-T 5686599-TGGCTCTTTGCTTG-T *
5554657-G-A 5686616-G-A *
5780978-A-T 5912937-A-T *
6043970-CTTT-C,CTT 6175929-CTTT-C,CTT 22×T*
6134473-G-C 6266432-G-C *
6688611-G-A 6820570-G-A YY*
6688612-A-T 6820571-A-T YY*
6688616-C-G 6820575-C-G YY*
6688619-C-G 6820578-C-G YY*
6688622-T-TTCCAGCTGC 6820581-T-TTCCAGCTGC *
7410589-CAA-C 7542548-CAA-C 11×A*
7970158-A-G 8102117-A-G YY*
8052313-CCCGT-C 8184272-CCCGT-C *
8052319-T-G 8184278-T-G Y*
8052325-A-AACGG 8184284-A-AACGG *
8218240-T-C 8350199-T-C YY*
8807151-A-C 8939110-A-C Y*
8888375-C-CT,CT 9020334-C-CT,CT 25×T*
9063848-C-T 9226239-C-T Y*
9329554-C-T 9491945-C-T Y*
9427708-G-A 9590099-G-A YY*
9900303-T-A 10062694-T-A Y*
10662169-C-CTCCACTGCACGCCACTCCACTGCACTCCATTCCATTCCAT *
10756962-T-TTCCATTCCATTCCATTCCATTCCATTCCATTCCACTGCAC,TTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCACTGCAC *
10889266-GCCATT-G,TCCATT *
10958318-CCATTCCAT-C,CTCCAT *
13259198-G-T 11103522-G-T *
13259201-A-C 11103525-A-C *
13259207-GT-G 11103531-GT-G *
13284832-GT-G 11129156-GT-G *
13334639-G-GTCTCTCACT 11178963-G-GTCTCTCACT *
13334644-A-T 11178968-A-T *
13339027-T-C 11183351-T-C *
13380486-T-C 11224810-T-C *
11294723-A- *
13462207-T-G 11306531-T-G *
13474112-T-C 11318436-T-C *
13485311-T-G 11329635-T-G *
13488844-G-GAC 11333168-G-GAC *
13489217-C-G 11333541-C-G *
13499806-T-TA 11344130-T-TA *
13499807-T-A 11344131-T-A 11×A*
13541007-A-G 11385331-A-G *
13612009-C-G 11456333-C-G *
13612013-C-A 11456337-C-A *
13612016-C-A 11456340-C-A *
13687627-A-C,T 11531951-A-C,T *
13919054-CA-C 11798348-CA-C *
14392746-T-C 12272042-T-C YY*
14617921-T-C 12506119-T-C Y*
14635670-G-A 12523739-G-A YY*
14744883-C-A 12632952-C-A YY*
14744891-G-A 12632960-G-A YY*
14787715-T-C 12675785-T-C YY*
15491848-A-T 13379968-A-T YY*
15545639-G-A 13433759-G-A YY*
16031457-G-A 13919577-G-A Y*
16336894-A-AT 14225014-A-AT *
16535053-CT-C,CTTT 14423173-CT-C,CTTT 35×T*
16710825-T-C 14598945-T-C YY*
16868605-A-G 14756725-A-G YY*
16940438-A-T 14828558-A-T YY*
16940446-GTT-G 14828566-GTT-G *
16940450-C-A 14828570-C-A YY*
17031018-T-C 14919138-T-C YY*
17299921-CATAG-C,C 15188041-CATAG-C,C 12×ATAG*
17317729-C-CACACAG 15205849-C-CACACAG *
17361058-C-CAAAAAAA 15249178-C-CAAAAAAA 25×A*
17446767-C-CTT,CTT 15334887-C-CTT,CTT 33×T*
17641957-CT-C,CTTT 15530077-CT-C,CTTT 25×T*
17648536-ATT-A,ATTT 15536656-ATT-A,ATTT 22×T*
17678624-T-C 15566744-T-C YY*
18109358-T-TAAA 15997478-T-TAAA 23×A*
18196560-T-C 16084680-T-C YY*
18201958-T-C 16090078-T-C YY*
18279920-G-T 16168040-G-T P6_Prx *
18581904-CAA-C 16470024-CAA-C 10×A*
18688500-C-A,CA 16576620-C-A,CA 20×A*
18712435-A-G 16600555-A-G YY*
18756804-T-C 16644924-T-C YY*
18858611-GAA-G,GA 16746731-GAA-G,GA 14×A*
18980438-A-G 16868558-A-G YY*
18984952-T-A 16873072-T-A YY*
19007764-T-C 16895884-T-C YY*
19032285-A-ACT 16920405-A-ACT *
19032288-TGA-T 16920408-TGA-T *
19155412-T-C 17043532-T-C Y*
19318178-CTTTTTTTTTT-C 17206298-CTTTTTTTTTT-C 28×T*
19537935-A-G 17426055-A-G YY*
19663297-G-A 17551417-G-A P5_Prx *
21128259-T-TA,TAA 18966373-T-TA,TAA 18×A*
21261826-TAA-T,TAAA 19099940-TAA-T,TAAA 26×A*
21464536-CAAA-C,CAAAA 19302650-CAAA-C,CAAAA 19×A*
21581965-T-A 19420079-T-A Y*
21966358-C-T 19804472-C-T Y*
22012364-A-G 19850478-A-G Y*
22202902-A-G 20041016-A-G YY*
22230288-G-T 20068402-G-T DYZ19 *
22270397-A-G 20108511-A-G DYZ19 *
22480137-C-A 20318251-C-A DYZ19 *
22537973-T-C 20376087-T-C Y*
22723405-A-C 20561519-A-C YY*
22768350-A-T 20606464-A-T YY*
22855851-T-C 20693965-T-C Y*
22868285-TAAA-T,TAA 20706399-TAAA-T,TAA 27×A*
22949878-CT-C,C 20787992-CT-C,C 23×T*
20787993-T- *
23350626-CTT-C,CTTTT 21188740-CTT-C,CTTTT 21×T*
23380568-G-GA 21218682-G-GA *
23505495-CAA-C,CAAAAA 21343609-CAA-C,CAAAAA 23×A*
21753786-G-A *
24390506-C-CAA 22244359-C-CAA 11×A*
25551807-T-C 23405660-T-C P1_gr1 *
25737135-C-A 23590988-C-A P1_b3 *
28474298-AC-A 26328151-AC-A *
28474319-C-T 26328172-C-T *
28474326-C-A 26328179-C-A *
28534865-A-G 26388718-A-G *
28539174-CAAAA-C,CAAA 26393027-CAAAA-C,CAAA 20×A*
28564147-T-G 26418000-T-G *
56826392-CCATTCCATTG-C *
56829170-A-T *
56829185-A-T *
56834433-CA-C *
56835863-C-CCACTCCACTCCA *
56848702-CTTTGTGACATATCTCTGCACTGATCACCTAGGTGATGTAACAGTTTTATAAGCTCTGCCTACAGGGA-C *
56848777-C- *
56848779-A- *
56851596-C-G *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.