Cooke

YDW-Kane-BY3: 7EK9PVND

Tree Position

R-U106/S21 > Z2265 > Z18 > BY41272 > BY39516

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRYDW-Kane-BY3
7EK9PVND
22936288-C-CTTT 20774402-C-CTTT 25×T+
59004623-G-GGAAAGAAA 56858476-G-GGAAAGAAA 16×GAAA+
15262458-C-CAAA 13150542-C-CAAA 30×A+
21635798-G-A 19473912-G-A BY16200 YY+
10971227-C-CTCCATTCCAT +
18290807-C-A 16178927-C-A P6_Prx +
16648115-GTTTT-G 14536235-GTTTT-G 29×T+
26455900-CTT-C 24309753-CTT-C P1_Y1 22×T+
23181453-CAA-C 21019567-CAA-C 34×A+
13532589-C-A 11376913-C-A Y97005FT171804 +
56887089-C-T +
28778852-C-CTTTT 26632705-C-CTTTT 33×T+
17449358-G-A 15337478-G-A Y+
10632738-ATTCCATCCATATCATTCCATTCCC-A +
13500028-G-A 11344352-G-A +
3095131-G-A 3227090-G-A FT81129 +
3203922-T-C 3335881-T-C +
3548408-A-C 3680367-A-C +
3761966-G-T 3893925-G-T FT81245 +
3841831-G-A 3973790-G-A FT85712 +
4158781-T-C 4290740-T-C +
4222466-C-A 4354425-C-A FT214499 +
4498389-GT-G 4630348-GT-G +
4559790-C-T 4691749-C-T FT214611 +
5797245-C-T 5929204-C-T FTB5391 +
6095453-C-T 6227412-C-T FT81665 +
6128838-C-T 6260797-C-T +
6128853-C-T 6260812-C-T +
6493522-C-G 6625481-C-G FT81703 +
6957049-A-C 7089008-A-C BY62510 YY+
7349387-T-C 7481346-T-C BY64674 YY+
7530414-T-C 7662373-T-C BY65695 YY+
8402539-G-A 8534498-G-A BY72367 YY+
9307412-G-C 9469803-G-C Y+
9307414-G-T 9469805-G-T Y+
9307416-G-C 9469807-G-C Y+
9423864-GA-G 9586255-GA-G +
10070119-G-T 10232510-G-T +
10849317-A-G FT434011 +
13311204-G-A 11155528-G-A BY85078 +
13495081-A-G 11339405-A-G FT171805 +
14888538-A-G 12776604-A-G BY98269 YY+
15038663-C-G 12926753-C-G BY99330 YY+
15184101-C-A 13072187-C-A Y+
16486051-A-G 14374171-A-G BY108147 YY+
16636384-C-A 14524504-C-A FT82010 Y+
17168174-T-G 15056294-T-G BY112761 YY+
18023646-A-G 15911766-A-G BY119204 Y+
18181961-A-G 16070081-A-G BY120701 YY+
22179255-T-C 20017369-T-C BY138198 YY+
22485601-C-T 20323715-C-T DYZ19 +
23041198-G-GAAAAAAAAAAAAAAAAAA 20879312-G-GAAAAAAAAAAAAAAAAAA 34×A+
23191696-C-A 21029810-C-A BY143699 Y+
23226073-C-T 21064187-C-T Y+
24475961-G-A 22329814-G-A BY150229 Y+
13686912-CGAATG-C 11531236-CGAATG-C 10×GAATG*
6985100-GGTGT-G 7117059-GGTGT-G 10×GT*
18726614-T-C 16614734-T-C A936A936 YY*
22962412-G-T 20800526-G-T YY*
4446635-T-TA 4578594-T-TA 27×A*
15583702-CAAA-C 13471822-CAAA-C 13×A*
58983619-G-A 56837472-G-A *
22277374-G-T 20115488-G-T DYZ19 *
3072578-T-C 3204537-T-C *
3072591-G-A 3204550-G-A *
3413894-C-A 3545853-C-A FTA35176 *
3583549-A-G 3715508-A-G S8595 *
3754956-G-A 3886915-G-A Y177 *
4453852-T-A 4585811-T-A *
5972747-G-C 6104706-G-C *
7400557-GGA-G 7532516-GGA-G *
13451591-AT-A 11295915-AT-A *
18698840-CCA-C 16586960-CCA-C 8×CA*
22919345-TG-T 20757459-TG-T *
3404731-GA-G 3536690-GA-G 11×A*
3585451-C-T 3717410-C-T FT123171 *
5010393-GCT-G 5142352-GCT-G *
13451531-C-CTGAAG 11295855-C-CTGAAG *
13927768-A-G 11807062-A-G Y*
14418218-T-C 12297493-T-C YY*
18256703-A-AAT 16144823-A-AAT *
22479890-C-T 20318004-C-T BY25835 DYZ19 *
59015856-C-T 56869709-C-T *
2888870-CAAAAA-C 3020829-CAAAAA-C 32×A*
6040928-CAA-C 6172887-CAA-C 12×A*
24435646-TA-T 22289499-TA-T 9×A*
7146776-G-GTT 7278735-G-GTT 18×T*
17895165-G-T 15783285-G-T YY*
23886958-A-AT 21725072-A-AT 10×T*
7013599-ATT-A 7145558-ATT-A 13×T*
18718886-ATATCTATC-A,ATATC 16607006-ATATCTATC-A,ATATC 13×TATC*
16568881-TAAA-T 14457001-TAAA-T 16×A*
56844969-C-A *
18109358-TAA-T,TA 15997478-TAA-T,TA 23×A*
23528873-ATTAT-A 21366987-ATTAT-A 4×TTAT*
7341310-CTT-C 7473269-CTT-C 12×T*
7047797-AT-A 7179756-AT-A 10×T*
14070220-TA-T 11949514-TA-T 9×A*
28416525-C-CT 26270378-C-CT P1_gr2 8×T*
23761608-A-AAAGAAG,AAAGAAGAAG 21599722-A-AAAGAAG,AAAGAAGAAG 23×AAG*
6929904-T-C 7061863-T-C Y*
18728740-G-C 16616860-G-C YY*
15876360-CAAAAA-C 13764480-CAAAAA-C 21×A*
13267842-C-T 11112166-C-T *
15801151-G-GTT 13689271-G-GTT 15×T*
15416886-T-TAA 13305006-T-TAA 11×A*
4049605-C-CTT 4181564-C-CTT 11×T*
2919170-CTT-C 3051129-CTT-C 11×T*
5796957-GAA-G 5928916-GAA-G 13×A*
22167207-T-C 20005321-T-C YY*
56841560-C-T *
6765640-GTT-G,GT 6897599-GTT-G,GT 21×T*
22167191-T-C 20005305-T-C YY*
10860945-G-C *
5231889-TC-T 5363848-TC-T *
14490998-G-T 12370267-G-T YY*
56844965-T-A *
16440523-AT-A 14328643-AT-A 9×T*
4476433-G-GT 4608392-G-GT 9×T*
2861534-CAAA-C,CAA 2993493-CAAA-C,CAA 25×A*
4679748-AT-A 4811707-AT-A 9×T*
4618583-C-T 4750542-C-T *
6786369-T-G 6918328-T-G YY*
3283471-G-A 3415430-G-A *
5260410-CA-C,CAA 5392369-CA-C,CAA 20×A*
22919350-C-A 20757464-C-A YY*
22167204-T-C 20005318-T-C YY*
22167208-G-A 20005322-G-A YY*
5682811-GAA-G 5814770-GAA-G 12×A*
17332750-CAAA-C,CAAAA 15220870-CAAA-C,CAAAA 22×A*
8016938-CT-C,CTT 8148897-CT-C,CTT 25×T*
15155424-T-TA 13043511-T-TA 9×A*
3423905-A-C 3555864-A-C *
6346021-G-GTT 6477980-G-GTT 12×T*
21698760-C-A 19536874-C-A YY*
56844987-C-A *
15971694-A-C 13859814-A-C YY*
9672575-C-T 9834966-C-T IR3_Prx *
16730021-C-A 14618141-C-A YY*
5334575-AT-A 5466534-AT-A 10×T*
14235207-G-GT 12114501-G-GT 9×T*
20128468-TAAA-T 18016588-TAAA-T P5_Dst 20×A*
10954251-A-C *
3240355-ATTTT-A 3372314-ATTTT-A 19×T*
12376050-CTTT-C *
7383851-CAAA-C,CAAAA 7515810-CAAA-C,CAAAA 24×A*
3963763-GA-G 4095722-GA-G 11×A*
6539997-CAA-C 6671956-CAA-C 13×A*
5227087-CA-C,CAA 5359046-CA-C,CAA 21×A*
2866878-G-A 2998837-G-A YY*
15793918-T-TAA 13682038-T-TAA 12×A*
28500806-CT-C,CTT 26354659-CT-C,CTT 18×T*
3580445-T-C 3712404-T-C *
15520786-C-CA 13408906-C-CA 9×A*
18447451-C-G 16335571-C-G P6_Dst *
3286563-G-A 3418522-G-A FT88275 *
3128625-CA-C,CAA 3260584-CA-C,CAA 20×A*
17787106-CAAAA-C,CA 15675226-CAAAA-C,CA 19×A*
13448152-A-G 11292476-A-G *
13479031-C-T 11323355-C-T *
13479033-C-A 11323357-C-A *
21397822-T-TA 19235936-T-TA 9×A*
19409391-CA-C,CAA 17297511-CA-C,CAA 22×A*
21922080-CAAA-C,CAA 19760194-CAAA-C,CAA 23×A*
13965269-CA-C,CAA 11844563-CA-C,CAA 21×A*
23505495-C-CA,CAA 21343609-C-CA,CAA 23×A*
4110192-CT-C 4242151-CT-C 9×T*
3283408-T-G 3415367-T-G *
3744243-C-CTT 3876202-C-CTT 11×T*
5491261-CAA-C 5623220-CAA-C 18×A*
21617605-CA-C,CAAAA 19455719-CA-C,CAAAA 23×A*
23515162-ATT-A,AT 21353276-ATT-A,AT 14×T*
10081956-C-T 10244347-C-T *
4880709-GT-G,GTT 5012668-GT-G,GTT 22×T*
3031075-A-G 3163034-A-G *
4973549-A-G 5105508-A-G *
23037237-ATTTT-A,ATTT 20875351-ATTTT-A,ATTT 20×T*
5264019-G-C 5395978-G-C *
18924010-C-A 16812130-C-A YY*
3205857-GC-G 3337816-GC-G *
17143169-T-TA 15031289-T-TA 10×A*
3650366-G-C 3782325-G-C *
10859967-A-ATTCAGTGCCATTCTATTCCTTTCAATACCATTCAATTCCATTCCACTCCT *
13417221-C-CA 11261545-C-CA 9×A*
10648074-T-C,C *
7152370-CTT-C 7284329-CTT-C 11×T*
56875268-G-A *
7375259-C-CTT 7507218-C-CTT 11×T*
10678044-C-CCATTCCATTCCATTCCAT *
13472571-AGTCAAAGTCTGGAGAATGGTTACATCTCCTGGATGATCGG-A 11316895-AGTCAAAGTCTGGAGAATGGTTACATCTCCTGGATGATCGG-A *
13472614-CAGAAATATGTCCCAATGCCCCCTCCCTCCGGAGCCTAGAGAAGATTTGCATCATTTGGGTGATCAGCGCAGAGATATATCACAATGTCCCATGTACAA-C 11316938-CAGAAATATGTCCCAATGCCCCCTCCCTCCGGAGCCTAGAGAAGATTTGCATCATTTGGGTGATCAGCGCAGAGATATATCACAATGTCCCATGTACAA-C *
5007689-CAAAA-C,CAAA 5139648-CAAAA-C,CAAA 22×A*
18106369-C-T 15994489-C-T YY*
13449960-T-TTCCATACCATTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCGCTCCACTCCACTCCACTTCACTCCAATCCACTCCAC,TTCCATTCCATACCATTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCACTCCACTCCACTTCACTCCAATCCACTCCAC 11294284-T-TTCCATACCATTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCGCTCCACTCCACTCCACTTCACTCCAATCCACTCCAC,TTCCATTCCATACCATTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCACTCCACTCCACTTCACTCCAATCCACTCCAC *
10632765-CAACTG-C *
10678188-ATTC-A *
7730471-G-GATAGATAC,GATAGATAC 7862430-G-GATAGATAC,GATAGATAC 10×ATAC*
11333954-C- *
56834438-CA-C *
56834440-TTCCATTCCCTTCCATTCCATTCCCTTCCATTACATTCCATTCGATTGCATTCCA-T *
4103175-CT-C,C 4235134-CT-C,C 13×T*
4329128-T-G 4461087-T-G 5×TTG*
10860923-T-C *
10860943-C-T *
10860928-T-TTACACTCCAC *
10679708-T-TCAGAAGATCTCACTCTGTCAC *
11333958-CA- *
16616858-CAG- 10×AG*
5999363-CA-C,CAA 6131322-CA-C,CAA 20×A*
7131386-A-C 7263345-A-C YY14×C*
10860948-C-T *
16532094-A-T 14420214-A-T YY*
56835809-C- *
2834892-A-G 2966851-A-G YY*
2845259-A-AT 2977218-A-AT *
2930345-TG-T 3062304-TG-T *
3080372-TA-T 3212331-TA-T 9×A*
3207884-T-A 3339843-T-A *
3207886-A-C 3339845-A-C *
3207887-G-T 3339846-G-T *
3207889-T-A 3339848-T-A *
3415089-T-A 3547048-T-A *
3534163-T-G 3666122-T-G *
3581672-C-G 3713631-C-G *
3581685-A-T 3713644-A-T *
3712813-T-TGTGTGAGAGAGAGAGAGAGAGAGAGAGA 3844772-T-TGTGTGAGAGAGAGAGAGAGAGAGAGAGA *
4026254-T-A 4158213-T-A *
4419687-T-C 4551646-T-C *
4712526-C-T 4844485-C-T *
4712527-A-G 4844486-A-G *
4794002-T-C 4925961-T-C *
5089072-T-TA 5221031-T-TA *
5203779-TA-T,TAAA 5335738-TA-T,TAAA 24×A*
5231891-T-A 5363850-T-A *
5275653-A-G 5407612-A-G *
5275654-A-T 5407613-A-T *
5275655-C-T 5407614-C-T *
5275663-TAAAG-T 5407622-TAAAG-T *
5404593-G-A 5536552-G-A *
5466094-T-C 5598053-T-C *
5523917-CTTTT-C,CTTTTTTT 5655876-CTTTT-C,CTTTTTTT 24×T*
5751903-A-G 5883862-A-G *
5787075-TTATA-T 5919034-TTATA-T 8×TA*
5972279-A-T 6104238-A-T *
6444966-A-G 6576925-A-G *
6457773-T-TAAA 6589732-T-TAAA 15×A*
6708928-G-A 6840887-G-A YY*
6708930-G-A 6840889-G-A YY*
6800530-T-C 6932489-T-C YY*
6929891-C-G 7061850-C-G Y*
7100954-CTTTTT-C,CTTTTTTTT 7232913-CTTTTT-C,CTTTTTTTT 32×T*
7150401-A-AAAAT 7282360-A-AAAAT 13×T*
7157233-CT-C 7289192-CT-C *
7157236-C-CT 7289195-C-CT *
7360219-T-C 7492178-T-C YY*
7534392-G-GTTTTTTTTTTTTGTT 7666351-G-GTTTTTTTTTTTTGTT 13×T*
7534406-G-GTTTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTTT 7666365-G-GTTTTTTTTTTTTTTTT,GTTTTTTTTTTTTTTTT 19×T*
7535832-A-G 7667791-A-G YY*
7554786-AACAC-A,A 7686745-AACAC-A,A 22×AC*
7939472-TA-T,T 8071431-TA-T,T 35×A*
8288815-TA-T,TAAA 8420774-TA-T,TAAA 23×A*
8644358-AG-A 8776317-AG-A *
8644548-T-A 8776507-T-A YY*
8697722-C-G 8829681-C-G Y*
8972982-A-G 9135373-A-G *
9082361-C-T 9244752-C-T Y*
9493398-A-T 9655789-A-T *
9672551-C-T 9834942-C-T IR3_Prx *
9672567-C-T 9834958-C-T IR3_Prx *
9672584-C-T 9834975-C-T IR3_Prx *
9672585-C-T 9834976-C-T IR3_Prx *
9738297-A-C 9900688-A-C IR3_Prx *
9891861-T-C 10054252-T-C YY*
10081957-C-T 10244348-C-T *
10632780-CCTGTCCTCTTCTCTCCACTCCATTCCATTCCACTCCATATCCATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGT-C *
10632864-AGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCCATTTTATTCCATTGCATTCCATACC-A *
10889266-G-GCCATT,T *
10954258-T-C *
13318232-GA-G 11162556-GA-G *
13544090-A-T 11388414-A-T *
13564516-A-G 11408840-A-G *
13569793-C-T 11414117-C-T *
13588588-G-T 11432912-G-T *
13614824-G-T 11459148-G-T *
13951518-T-A 11830812-T-A Y*
14250660-G-A 12129954-G-A Y*
14255678-G-T 12134972-G-T Y*
14292234-A-G 12171528-A-G Y*
14350477-CA-C 12229772-CA-C 8×A*
14427907-C-T 12307182-C-T YY*
14427913-C-T 12307188-C-T YY*
14523202-A-G 12411403-A-G YY*
14656154-CAA-C,CAAAAA 12544219-CAA-C,CAAAAA 24×A*
15076170-A-G 12964260-A-G YY*
15151502-CAAAAA-C,CAAA 13039589-CAAAAA-C,CAAA 23×A*
15161296-A-T 13049382-A-T YY*
15410663-T-G 13298783-T-G YY*
15669964-CAAAAAAA-C,CAAAAAA 13558084-CAAAAAAA-C,CAAAAAA 18×A*
15866268-CAAAAAAAAAAAAAAAAAAAAAAAA-C,CA 13754388-CAAAAAAAAAAAAAAAAAAAAAAAA-C,CA 43×A*
15918679-T-C 13806799-T-C YY*
15937040-G-A 13825160-G-A Y*
16205796-C-CT,CTT 14093916-C-CT,CTT 21×T*
16576973-A-AC 14465093-A-AC *
16576978-T-C 14465098-T-C YY*
16576979-AG-A 14465099-AG-A *
17000082-CT-C 14888202-CT-C *
17158968-CT-AT,C 15047088-CT-AT,C 26×T*
17324530-A-T 15212650-A-T YY*
17364106-ATAT-A 15252226-ATAT-A *
17364119-AC-A 15252239-AC-A *
17364122-T-TG 15252242-T-TG *
17661265-CA-C 15549385-CA-C *
18317768-T-A 16205888-T-A P6_Prx *
18447437-T-G 16335557-T-G P6_Dst *
18447445-A-C 16335565-A-C P6_Dst *
18607444-T-C 16495564-T-C YY*
19021650-T-C 16909770-T-C YY*
19052414-CA-C,CAA 16940534-CA-C,CAA 24×A*
19059747-CT-C,TT 16947867-CT-C,TT 25×T*
19202979-A-G 17091099-A-G YY*
19392778-G-GTT 17280898-G-GTT 12×T*
18658113-T- P4_Gap *
21109978-T-C 18948092-T-C YY*
21118158-T-TAC,TACAC 18956272-T-TAC,TACAC 22×AC*
21124920-A-C 18963034-A-C Y*
21412297-T-C 19250411-T-C YY*
21698746-TTTTG-T 19536860-TTTTG-T *
21698750-G-GCAAA 19536864-G-GCAAA *
21716292-ATT-A 19554406-ATT-A 10×T*
21993009-TA-T 19831123-TA-T *
22167186-C-T 20005300-C-T YY*
22167194-C-T 20005308-C-T YY*
22167198-G-A 20005312-G-A YY*
22167215-C-T 20005329-C-T YY*
22171232-C-G 20009346-C-G Y*
22277372-TG-T 20115486-TG-T DYZ19 *
22461576-A-G 20299690-A-G DYZ19 *
24095975-A-G 21949828-A-G P3_b1 *
26045985-AT-A 23899838-AT-A P1_Y1 *
27507506-A-G 25361359-A-G P1_Y2 *
27662952-A-G 25516805-A-G P1_Y2 *
28024607-G-A 25878460-G-A P1_Y2 *
28431954-T-C 26285807-T-C P1_gr2 *
28438210-A-G 26292063-A-G P1_gr2 *
28500798-T-G 26354651-T-G Y*
28561218-G-A 26415071-G-A *
28674732-T-C 26528585-T-C *
28691443-G-T 26545296-G-T *
28800060-TG-T 26653913-TG-T *
28802876-T-G 26656729-T-G *
56825959-AGATTGCATTCCATTC-A,CGATTGCATTCCATTC *
56833172-ACTCC-A *
56833177-AC-A *
56834810-T-TTCCATTCCACACCACTCCACTCC *
56844981-C-T *
56844982-T-G *
56844990-G-A *
56844997-G-C *
56845161-A-C *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.