Simon

YDW-BY3: 360991
MDKA Birth: France > Normandie 1700

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z258 > Z367/S255 > Z34/S368 > Z33/S212 > BY164497 > BY3604 > Z256 > Z275 > FT316723 > FT369318

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRYDW-BY3
360991
5723695-C-A 5855654-C-A A+
23878184-G-A 21716298-G-A A+
27917280-G-A 25771133-G-A P1_Y2 A+
13478972-C-T 11323296-C-T A*
25513737-C-CA 23367590-C-CA P1_gr1 12×AA*
6279568-T-C 6411527-T-C IR3_Dst A*
18322810-T-A 16210930-T-A P6_Prx A*
19740071-C-T 17628191-C-T P5_Prx A*
19773928-A-G 17662048-A-G P5_Prx A*
20668466-T-G 18506580-T-G P4_Prx A*
20776204-T-G 18614318-T-G P4_Prx A*
22265350-A-G 20103464-A-G DYZ19 A*
22265351-A-G 20103465-A-G DYZ19 A*
26045121-C-T 23898974-C-T P1_Y1 A*
8374265-T-A 8506224-T-A FT137650 YY+
14381213-G-A 12260509-G-A CTS2596 PF4696 Y+
12377217-T-A FT29796 +
3937826-G-C 4069785-G-C FTB78762 +
4148165-C-A 4280124-C-A FT56928 +
4445314-A-G 4577273-A-G FT3959 +
6587631-G-A 6719590-G-A +
6618329-C-T 6750288-C-T FT203760 Y+
7328704-T-C 7460663-T-C FTB73328 YY+
9160755-T-C 9323146-T-C FTB54460 +
9403566-G-C 9565957-G-C FTB73460 YY+
10036937-C-T 10199328-C-T +
10943293-C-G +
13543666-A-G 11387990-A-G +
11648125-C-T +
14005708-G-A 11885002-G-A FTB73490 YY+
14462350-C-T 12341623-C-T FTB73535 YY+
15741170-G-A 13629290-G-A FTB54479 Y+
16050997-T-G 13939117-T-G FTB73659 YY+
16984754-T-G 14872874-T-G FTB73736 YY+
17015441-C-A 14903561-C-A FTB73739 YY+
17866019-CAATT-C 15754139-CAATT-C +
18154788-G-A 16042908-G-A FTB73862 YY+
19008960-T-G 16897080-T-G FTB73916 YY+
19031621-T-A 16919741-T-A FTB73920 YY+
20807914-G-T 18646028-G-T FTB54510 P4_Gap +
21759116-T-G 19597230-T-G FTB74067 YY+
22719798-A-T 20557912-A-T FTB74136 YY+
22734853-G-T 20572967-G-T FTB74140 YY+
22920271-G-C 20758385-G-C FTB74155 YY+
23070493-G-A 20908607-G-A FTB74170 YY+
28562698-A-T 26416551-A-T FTB74241 +
22340539-G-C 20178653-G-C DYZ19 *
13448608-CCACTT-C,CCACTG 11292932-CCACTT-C,CCACTG *
6541509-GA-G 6673468-GA-G *
18366163-G-GAGAA 16254283-G-GAGAA P6_Prx 4×AGAA*
13820775-TATGGAATGGA-T 11700069-TATGGAATGGA-T 11×ATGGA**
22475645-T-C 20313759-T-C BY223398 DYZ19 **
22422229-G-T 20260343-G-T DYZ19 **
10821865-T-A **
24508201-A-T 22362054-A-T **
20757360-AC-A 18595474-AC-A P4_Prx **
10071284-T-G 10233675-T-G **
14305238-G-A 12184532-G-A **
17733590-A-C 15621710-A-C **
21416732-G-C 19254846-G-C FTB54514 **
22318373-C-A 20156487-C-A DYZ19 **
22464605-G-T 20302719-G-T FT458411 DYZ19 **
22479849-A-T 20317963-A-T DYZ19 **
22487465-G-C 20325579-G-C DYZ19 **
22984125-C-A 20822239-C-A FTB54524 **
11618-C-G **
22270079-G-A 20108193-G-A FGC32902FGC32908 DYZ19 ***
19048396-G-T 16936516-G-T ZS10321 ***
56830215-T-TTCCAC ***
5354749-CAT-C 5486708-CAT-C 9×AT***
8214860-GTTTT-G 8346819-GTTTT-G 21×T***
7524509-G-GT 7656468-G-GT 9×T***
56826005-G-T ***
13257559-C-A 11101883-C-A ***
56827527-CTTTCCTTTCCATTCCATTCCTTTCC-C,CTTTCCATTCCATTCCATGCG ***
56850587-C-G ***
14727319-ATT-A,AT 12615387-ATT-A,AT 23×T***
10885008-T-A ***
13470658-C-T 11314982-C-T BY85842 ***
10893774-T-C ***
14501597-TA-T 12389802-TA-T 8×A***
28539586-TAAAA-T 26393439-TAAAA-T 19×A***
14795068-C-A 12683139-C-A ***
5241818-CA-C 5373777-CA-C ***
10935579-CTCCATTCCATTCCAT-C ***
13257555-C-T 11101879-C-T ***
13257565-C-A 11101889-C-A FT441954 ***
16896539-CAAAA-C,CAAAAA 14784659-CAAAA-C,CAAAAA 17×A***
22302992-C-T 20141106-C-T DYZ19 ***
22462013-T-C 20300127-T-C DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.