Hutchinson

BigY3: 942080
MDKA Birth: United States > Ohio 1820

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > FGC13616

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
942080
4709054-T-C 4841013-T-C A*
23255668-C-CA 21093782-C-CA 10×AA*
28791325-A-ATGTAG 26645178-A-ATGTAG A*
28791351-T-A 26645204-T-A A*
10971065-A-C A*
10801993-C-T A*
10924374-T-A A*
10971069-T-G A*
28805687-G-T 26659540-G-T A*
10756243-C-A A*
10925822-T-G A*
28817542-T-C 26671395-T-C A*
10756242-T-A A*
6267618-T-TCA 6399577-T-TCA IR3_Dst 8×CAA*
22313209-G-A 20151323-G-A DYZ19 A*
13652122-G-A 11496446-G-A A*
5670513-A-G 5802472-A-G A*
6313259-C-T 6445218-C-T IR3_Dst A*
18341707-G-A 16229827-G-A P6_Prx A*
20694876-T-C 18532990-T-C P4_Prx A*
25882758-C-T 23736611-C-T P1_Y1 A*
26124839-T-C 23978692-T-C P1_Y1 A*
26205449-C-G 24059302-C-G P1_Y1 A*
26427447-T-C 24281300-T-C P1_Y1 A*
56861811-T-A A*
15275092-G-GT 13163181-G-GT 9×T+
22961980-G-T 20800094-G-T FTA41774 YY+
23971967-G-A 21825820-G-A BY148899 Y+
15500631-C-A 13388751-C-A YY+
2757267-GT-G 2889226-GT-G +
2781768-G-A 2913727-G-A FTA37830 YY+
3745614-C-T 3877573-C-T FTA42494 +
3762071-CA-C 3894030-CA-C +
4294469-T-C 4426428-T-C FTA42643 +
5402357-T-C 5534316-T-C FTA42884 +
5563726-A-T 5695685-A-T FTA42911 +
5754899-C-T 5886858-C-T FTA42971 +
6456200-CTGTT-C 6588159-CTGTT-C +
6790022-C-T 6921981-C-T YY+
6816900-G-A 6948859-G-A FTA37937 YY+
6908845-C-T 7040804-C-T BY62129 YY+
7524402-C-A 7656361-C-A FTA38179 YY+
7870298-C-T 8002257-C-T FTA38324 YY+
7893438-A-G 8025397-A-G FTA38330 YY+
8967397-G-A 9129788-G-A FTA38734 +
9825370-T-C 9987761-T-C FTA38839 Y+
9915097-T-C 10077488-T-C Y+
10093344-A-T 10255735-A-T +
13800941-A-G 11680235-A-G +
13818617-G-C 11697911-G-C FTA43185 +
13823916-C-T 11703210-C-T FTA35020 +
13883350-T-C 11762644-T-C FTA38887 Y+
14405705-C-G 12285002-C-G FTA39145 YY+
14785951-C-T 12674021-C-T FTA39297 YY+
15086440-C-T 12974530-C-T FTA39397 YY+
16703827-G-T 14591947-G-T FTA40006 Y+
17331356-C-G 15219476-C-G FTA40252 YY+
17436006-C-T 15324126-C-T FT243406 YY+
17556407-C-T 15444527-C-T FTA40351 YY+
17655603-A-G 15543723-A-G FTA40397 YY+
17968126-A-T 15856246-A-T FTA40536 Y+
18416745-C-A 16304865-C-A FTA40694 P6_Gap +
18424080-A-C 16312200-A-C FTA40699 P6_Gap +
18571365-A-G 16459485-A-G YY+
18818338-G-T 16706458-G-T FTA40799 Y+
19459075-C-T 17347195-C-T YY+
19513337-C-T 17401457-C-T FTA41093 YY+
21141804-A-G 18979918-A-G FTA41160 YY+
21493837-A-G 19331951-A-G FTA41326 YY+
21506524-T-A 19344638-T-A FTA41332 YY+
23062767-T-G 20900881-T-G FTA41819 YY+
23493299-A-G 21331413-A-G FTA41999 YY+
24427712-A-C 22281565-A-C FTA42112 Y+
28677085-T-A 26530938-T-A FTA42222 +
8631875-C-CA 8763834-C-CA BY3257 10×A*
59020762-G-A 56874615-G-A *
59020751-A-T 56874604-A-T *
10050428-C-T 10212819-C-T *
22230249-G-C 20068363-G-C DYZ19 *
22289046-C-A 20127160-C-A DYZ19 *
17082977-C-CCTTT 14971097-C-CCTTT 15×CTTT**
2691648-G-GTTTTGT 2823607-G-GTTTTGT 4×TTTTGT**
7438075-A-ATTG 7570034-A-ATTG 10×T**
24386990-CTCTA-C 22240843-CTCTA-C **
2866408-G-A 2998367-G-A **
14695992-CAAAA-C 12584058-CAAAA-C 30×A**
13468932-G-A 11313256-G-A **
20869010-G-T 18707124-G-T P4_Dst **
22430139-A-G 20268253-A-G DYZ19 **
24904674-G-GTTTT 22758527-G-GTTTT g1 21×T**
10628868-T-C **
22436851-A-G 20274965-A-G DYZ19 **
17723007-C-A 15611127-C-A **
19340289-G-A 17228409-G-A **
10628860-C-A **
10628864-T-G **
17950825-AATATATATATATATATATATATATATATATATATATATATAT-A 15838945-AATATATATATATATATATATATATATATATATATATATATAT-A 27×AT**
16627745-T-C 14515865-T-C **
21498738-T-C 19336852-T-C **
3370488-T-C 3502447-T-C **
4763508-A-T 4895467-A-T **
4763513-A-G 4895472-A-G **
4842249-G-A 4974208-G-A **
5963753-G-C 6095712-G-C **
7577736-C-T 7709695-C-T **
10622278-C-G **
13481993-T-C 11326317-T-C **
13607850-A-C 11452174-A-C **
13708987-A-G 11553311-A-G **
14159520-A-ATG 12038814-A-ATG **
14302428-G-A 12181722-G-A **
14683717-T-C 12571783-T-C **
15012335-G-T 12900423-G-T **
15835016-T-C 13723136-T-C **
19781124-A-T 17669244-A-T P5_Prx **
21050011-A-AT 18888125-A-AT **
21450501-TA-T 19288615-TA-T **
21651736-G-A 19489850-G-A **
22437287-C-G 20275401-C-G DYZ19 **
23231093-T-C 21069207-T-C **
23521463-C-A 21359577-C-A **
27548433-G-A 25402286-G-A P1_Y2 **
28683686-A-C 26537539-A-C **
28789090-T-A 26642943-T-A **
10224-C-A **
4673338-C-A 4805297-C-A ***
10050418-A-G 10212809-A-G ***
13819969-G-T 11699263-G-T ***
16641809-ATG-A 14529929-ATG-A ***
58997705-C-T 56851558-C-T ***
13467596-T-C 11311920-T-C ***
10050498-G-C 10212889-G-C ***
10050507-C-T 10212898-C-T S13201 ***
10050510-A-T 10212901-A-T ***
10050526-A-G 10212917-A-G ***
13465905-A-G 11310229-A-G ***
10050445-C-T 10212836-C-T ***
10050458-C-T 10212849-C-T ***
10050460-A-G 10212851-A-G ***
10050481-A-T 10212872-A-T ***
10050489-C-T 10212880-C-T ***
10050493-A-C 10212884-A-C ***
28791370-A-G 26645223-A-G ***
10682494-CTCCATTCCAT-C ***
16506873-T-TA 14394993-T-TA 9×A***
13478205-A-T 11322529-A-T A15569 ***
13453187-T-TCCATG 11297511-T-TCCATG ***
28805690-G-T 26659543-G-T ***
7139608-ATT-A,AT 7271567-ATT-A,AT 17×T***
10896293-AATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC-A ***
14184727-CAA-C,CAAA 12064021-CAA-C,CAAA 14×A***
4587293-AT-A 4719252-AT-A 10×T***
13488473-C-A 11332797-C-A ***
10050417-A-T 10212808-A-T ***
16050996-CTCTTTCTTTCTTTCTT-C 13939116-CTCTTTCTTTCTTTCTT-C 16×TCTT***
8016938-CTT-C,CT 8148897-CTT-C,CT 25×T***
13488329-T-A 11332653-T-A ***
5253199-C-A 5385158-C-A ***
13467543-T-C 11311867-T-C ***
13467633-C-G 11311957-C-G ***
13470683-C-T 11315007-C-T ***
16865493-TTA-T 14753613-TTA-T ***
13489631-ACCCACC-ACCCCCA,C 11333955-ACCCACC-ACCCCCA,C ***
21830205-CAAAAA-C 19668319-CAAAAA-C 25×A***
10790509-C-CACTCTA,CC ***
3491100-G-A 3623059-G-A ***
3662159-A-G 3794118-A-G FT73679 ***
3999738-T-TA 4131697-T-TA 8×A***
5114554-T-C 5246513-T-C ***
5963781-A-G 6095740-A-G ***
6114286-A-AG 6246245-A-AG ***
6998251-A-G 7130210-A-G ***
7073865-T-C 7205824-T-C ***
7257850-G-A 7389809-G-A ***
9040793-C-G 9203184-C-G ***
13308313-A-G 11152637-A-G ***
13468694-G-T 11313018-G-T ***
15628613-T-C 13516733-T-C ***
15628698-G-T 13516818-G-T ***
15834759-G-T 13722879-G-T ***
16516022-A-G 14404142-A-G ***
16545414-CAAA-C,CAAAA 14433534-CAAA-C,CAAAA 24×A***
16617871-C-A 14505991-C-A ***
19513598-TG-T,TT 17401718-TG-T,TT ***
21475874-G-A 19313988-G-A ***
22856675-C-T 20694789-C-T ***
22961980-G-GT 20800094-G-GT ***
23049248-C-T 20887362-C-T ***
56850365-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.