Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2647 > L460 > Z2624 > CTS595 > L158

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
E15593
22216842-C-A 20054956-C-A Y43761 DYZ19 A+
18011976-A-T 15900096-A-T P7_Dst YA+
22353059-A-T 20191173-A-T DYZ19 A+
22363564-C-A 20201678-C-A DYZ19 A+
24300841-A-T 22154694-A-T P3_t1 A*
24300843-G-T 22154696-G-T P3_t1 A*
20954369-T-A 18792483-T-A P4_Dst A*
14772705-A-G 12660774-A-G YYA*
20041961-C-T 17930081-C-T P5_Prx 13×TA*
13687133-C-A 11531457-C-A A*
9602675-G-T 9765066-G-T IR3_Prx A*
20954370-T-A 18792484-T-A P4_Dst A*
13687146-C-A 11531470-C-A A*
13449882-C-A 11294206-C-A A*
20685141-C-A 18523255-C-A P4_Prx A*
19713217-G-T 17601337-G-T P5_Prx A*
20280152-C-T 18118266-C-T P5_Dst A*
19719345-T-A 17607465-T-A P5_Prx A*
6252416-G-T 6384375-G-T IR3_Dst A*
6296579-G-C 6428538-G-C IR3_Dst A*
18283986-G-C 16172106-G-C P6_Prx A*
18321933-A-G 16210053-A-G P6_Prx A*
19622414-T-C 17510534-T-C P5_Prx A*
19843806-C-T 17731926-C-T P5_Prx A*
19844583-G-GT 17732703-G-GT P5_Prx A*
20761821-A-G 18599935-A-G P4_Prx A*
23180588-C-G 21018702-C-G YA*
23721994-C-T 21560108-C-T A*
24289172-G-T 22143025-G-T P3_t1 A*
25601414-A-T 23455267-A-T P1_gr1 A*
26005983-G-A 23859836-G-A P1_Y1 A*
28817865-T-C 26671718-T-C A*
2888632-A-C 3020591-A-C PF5458 M368 YY+
22297955-G-T 20136069-G-T BY216609 DYZ19 +
9127310-A-G 9289701-A-G BY37328 Y+
14747534-AAATAATAAT-A 12635603-AAATAATAAT-A A14064 12×AAT+
2888633-G-A 3020592-G-A Y81725 YY+
22893305-C-A 20731419-C-A Y78841 YY+
21100533-C-A 18938647-C-A BY130413 YY+
28809906-A-C 26663759-A-C BY45837 +
9390-C-T +
9394-G-A +
2801606-T-C 2933565-T-C YY+
2888627-C-T 3020586-C-T YY+
6398570-G-A 6530529-G-A +
6950912-G-A 7082871-G-A YY+
7359586-C-G 7491545-C-G YY+
8217576-T-A 8349535-T-A YY+
8272443-G-A 8404402-G-A YY+
8585490-A-G 8717449-A-G YY+
9142363-T-C 9304754-T-C BY78466 Y+
9489434-A-G 9651825-A-G BY37329 +
13254210-T-C 11098534-T-C BY84912 +
13846040-AGAATG-A 11725334-AGAATG-A 4×GAATG+
14197662-C-G 12076956-C-G YY+
14211213-T-A 12090507-T-A YY+
14917684-TA-T 12805751-TA-T +
15124415-G-A 13012502-G-A BY99804 YY+
15502640-A-G 13390760-A-G YY+
15781422-GCAAA-G 13669542-GCAAA-G +
16253520-C-T 14141640-C-T YY+
16774575-G-C 14662695-G-C YY+
16887252-G-A 14775372-G-A YY+
16956427-AATTTGATGG-A 14844547-AATTTGATGG-A +
16985403-C-T 14873523-C-T YY+
17185237-G-C 15073357-G-C YY+
17271941-T-G 15160061-T-G YY+
17304919-TATAGATAGATAGATAG-T 15193039-TATAGATAGATAGATAG-T 10×ATAG+
17458062-A-G 15346182-A-G YY+
18114934-C-T 16003054-C-T YY+
19182261-G-A 17070381-G-A Y+
19230490-GTAGT-G 17118610-GTAGT-G +
19350933-A-G 17239053-A-G YY+
19518735-A-G 17406855-A-G YY+
19519188-C-T 17407308-C-T YY+
22098189-T-C 19936303-T-C BY137597 YY+
22263144-G-C 20101258-G-C BY52221 DYZ19 +
22422387-GG-C 20260501-GG-C DYZ19 +
22422414-A-C 20260528-A-C BY37345 DYZ19 +
22467756-C-T 20305870-C-T FT458850 DYZ19 +
22486834-T-C 20324948-T-C BY224861 DYZ19 +
22557723-C-T 20395837-C-T YY+
22609344-G-T 20447458-G-T YY+
22893309-C-A 20731423-C-A BY225954 YY+
22906295-G-A 20744409-G-A YY+
9403-C-G +
9405-G-T +
9413-C-T +
21477198-CCTTCTTCTTCTT-C 19315312-CCTTCTTCTTCTT-C 9×CTT*
22508509-C-T 20346623-C-T DYZ19 *
8531044-GAA-G,GA 8663003-GAA-G,GA 14×A*
9617955-C-A 9780346-C-A IR3_Prx *
14105058-A-AAAACAAAC 11984352-A-AAAACAAAC 7×AAAC*
20105742-TTATCTATCTATC-T,TTATCTATC 17993862-TTATCTATCTATC-T,TTATCTATC P5_Dst 14×TATC*
22289101-G-T 20127215-G-T DYZ19 *
13723134-T-A 11567458-T-A **
19319880-A-C 17208000-A-C S7897BY13072 **
4236219-T-A 4368178-T-A PF3593 **
10977116-C-T **
10755383-ACTCC-A **
10755404-T-C **
10755433-A-G **
10755366-C-T **
10880340-T-A **
13320118-C-A 11164442-C-A **
14115903-G-T 11995197-G-T Y40293 **
22598668-C-A 20436782-C-A **
56728112-C-G **
11018168-C-A **
10666963-C-G **
10678023-T-TTTCCACTCCACTCCA **
28462053-C-A 26315906-C-A **
10855793-G-T **
10832449-T-A **
10832450-C-T **
13859856-A-C 11739150-A-C **
56841468-G-T **
3627547-C-A 3759506-C-A **
10872461-C-A **
10796647-C-T **
10880320-T-A **
7436339-C-A 7568298-C-A **
10880369-C-T **
11649159-C-A **
15556979-T-A 13445099-T-A **
18165738-C-A 16053858-C-A **
7063680-C-A 7195639-C-A **
9623646-A-AT 9786037-A-AT IR3_Prx **
9944155-G-T 10106546-G-T **
10821842-C-A **
9451275-C-A 9613666-C-A **
10764700-G-T **
26167730-A-ATG 24021583-A-ATG P1_Y1 **
11653969-C-A **
10782443-C-A **
4439530-C-A 4571489-C-A **
10786056-T-C **
10759994-C-CTGGT **
10947702-C-G **
11017533-C-A **
11025284-A-C **
6010261-C-A 6142220-C-A **
18281899-T-A 16170019-T-A P6_Prx **
11003682-C-A **
13723135-A-C 11567459-A-C **
5059600-C-A 5191559-C-A **
19705379-G-A 17593499-G-A P5_Prx **
3110183-C-A 3242142-C-A **
3410595-G-T 3542554-G-T **
4135798-C-A 4267757-C-A **
4717132-G-T 4849091-G-T **
5062211-T-A 5194170-T-A **
7062672-T-A 7194631-T-A **
8850241-G-T 8982200-G-T **
8860169-C-T 8992128-C-T BY10787 **
9171588-G-C 9333979-G-C **
9513199-T-A 9675590-T-A **
10659635-T-C **
10660797-T-TGCCAC **
10667442-C-A **
10857814-C-A **
10880304-T-TTCCAA **
10949201-T-C **
10995352-C-T **
11025277-C-G **
13717723-T-A 11562047-T-A **
11652899-G-A **
13872259-C-T 11751553-C-T FT239444 **
14168225-A-G 12047519-A-G **
15748050-C-A 13636170-C-A **
15860273-G-A 13748393-G-A FT239796 **
15866132-C-CA 13754252-C-CA **
16001482-G-T 13889602-G-T **
16053597-TGG-T 13941717-TGG-T **
16620046-G-T 14508166-G-T FT204851 **
17826278-A-G 15714398-A-G **
19394065-T-TC 17282185-T-TC **
19429704-T-A 17317824-T-A **
19705259-T-C 17593379-T-C P5_Prx **
22461433-G-A 20299547-G-A DYZ19 **
23143436-G-T 20981550-G-T **
26730229-G-T 24584082-G-T P1_g2 **
27756178-A-T 25610031-A-T P1_Y2 **
28460549-C-A 26314402-C-A **
28800310-T-C 26654163-T-C FT268575 **
10928-C-T **
32088-T-C **
13447159-C-T 11291483-C-T ***
9654352-T-TAGAA 9816743-T-TAGAA IR3_Prx 10×AGAA***
20128497-G-A 18016617-G-A P5_Dst ***
21202610-C-A 19040724-C-A ***
13481354-T-A 11325678-T-A ***
22488058-G-C 20326172-G-C DYZ19 ***
24600442-C-CTCTTTCTTTCTT 22454295-C-CTCTTTCTTTCTT P3_t2 18×TCTT***
3720177-G-GCC 3852136-G-GCC 8×C***
13862358-T-A 11741652-T-A ***
14826570-A-T 12714637-A-T ***
22189253-G-A 20027367-G-A ***
17302232-T-C 15190352-T-C ***
21318470-T-C 19156584-T-C ***
7165262-C-A 7297221-C-A ***
10682548-A-T ***
17128529-C-A 15016649-C-A ***
10987845-A-T ***
15468704-C-T 13356824-C-T ***
16308520-C-T 14196640-C-T ***
17675524-G-A 15563644-G-A ***
28786675-AATG-A 26640528-AATG-A ***
11643738-G-A ***
10971919-T-C ***
10971924-T-A ***
13228281-C-A 11072605-C-A ***
18923961-C-A 16812081-C-A ***
13447122-C-CATTGT 11291446-C-CATTGT ***
17843091-ATTTT-A,ATT 15731211-ATTTT-A,ATT 18×T***
10821916-C-G ***
13447158-A-T 11291482-A-T ***
14319448-GATAT-G 12198742-GATAT-G 8×AT***
16692064-T-A 14580184-T-A ***
16505958-C-T 14394078-C-T ***
23802428-C-T 21640542-C-T ***
13294227-C-A 11138551-C-A ***
16768530-T-A 14656650-T-A ***
6855339-C-CTTT 6987298-C-CTTT 15×T***
21153396-T-C 18991510-T-C ***
10958330-A-G ***
16003856-C-A 13891976-C-A ***
10821889-C-CTCCATTTAAA ***
6293362-TG-G,TT 6425321-TG-G,TT IR3_Dst ***
17674174-G-T 15562294-G-T ***
24870878-T-C 22724731-T-C IR1_R ***
6347798-G-A 6479757-G-A ***
10657306-A-T ***
6120234-CATATAT-C,CATAT 6252193-CATATAT-C,CATAT 14×AT***
10934756-T-G ***
17871677-C-A 15759797-C-A ***
13446699-T-TCATTCCATTCCATTCCATTC 11291023-T-TCATTCCATTCCATTCCATTC ***
13488911-C-A 11333235-C-A ***
10987231-C-T ***
10987233-A-G ***
10657325-C-A ***
23200618-C-A 21038732-C-A ***
21239006-C-A 19077120-C-A ***
19449428-GAAAAAAAA-G 17337548-GAAAAAAAA-G 23×A***
10657311-A-T ***
10657329-C-A ***
17547551-C-A 15435671-C-A ***
14504038-C-A 12392243-C-A ***
56832103-C-A ***
25885848-A-G 23739701-A-G P1_Y1 ***
9465138-CTGTGTG-C,CTG 9627529-CTGTGTG-C,CTG 15×TG***
2815052-C-A 2947011-C-A ***
3012698-T-C 3144657-T-C ***
4862496-C-G 4994455-C-G ***
7106504-G-T 7238463-G-T ***
7166636-ATATA-A,ATAT 7298595-ATATA-A,ATAT ***
7448654-C-A 7580613-C-A IR1_L ***
8911857-A-G 9043816-A-G ***
9908180-C-A 10070571-C-A ***
10657321-A-G ***
10754955-TC-T,TCTATTC ***
10796678-A-ATTCT ***
10821904-C-G,T ***
11024924-C-A ***
13862359-T-C 11741653-T-C ***
14377882-T-C 12257178-T-C ***
13208774-GA-G ***
16275600-A-T 14163720-A-T ***
16629248-A-G 14517368-A-G ***
16707501-G-A 14595621-G-A ***
17500569-C-A 15388689-C-A ***
17794234-CTCTTTCTTTCTTTCTTTCGT-C,CTCTTTCTTTCTTTCTTTCTT 15682354-CTCTTTCTTTCTTTCTTTCGT-C,CTCTTTCTTTCTTTCTTTCTT 4×TCTT***
21996254-T-C 19834368-T-C ***
23789451-C-T 21627565-C-T ***
25885852-A-AAAGAAAGGAAGG 23739705-A-AAAGAAAGGAAGG P1_Y1 7×AAGG***
27810382-A-G 25664235-A-G P1_Y2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.