Fisk

BigY3: IN76274

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > A16 > A276 > A14 > BY13089 > Y81604

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
IN76274
hg19:Y:58979155-G-A hg38:Y:56833008-G-A A*
hg38:Y:56834602-C-G A*
hg19:Y:16107182-C-T hg38:Y:13995302-C-T P8_Prx A*
hg38:Y:56832275-T-C A*
hg19:Y:19582143-G-A hg38:Y:17470263-G-A P5_Prx YA*
hg19:Y:19597726-A-G hg38:Y:17485846-A-G P5_Prx YA*
hg19:Y:19616652-A-G hg38:Y:17504772-A-G P5_Prx YA*
hg19:Y:19683034-C-T hg38:Y:17571154-C-T P5_Prx A*
hg19:Y:19712918-T-G hg38:Y:17601038-T-G P5_Prx A*
hg19:Y:20488205-T-G hg38:Y:18326319-T-G P5_Dst A*
hg19:Y:20635738-A-T hg38:Y:18473852-A-T P4_Prx A*
hg19:Y:20722996-T-C hg38:Y:18561110-T-C P4_Prx A*
hg19:Y:20775331-A-C hg38:Y:18613445-A-C P4_Prx A*
hg19:Y:22231438-T-A hg38:Y:20069552-T-A DYZ19 A*
hg19:Y:22252814-T-C hg38:Y:20090928-T-C DYZ19 A*
hg19:Y:22305441-A-T hg38:Y:20143555-A-T DYZ19 A*
hg19:Y:22313103-G-T hg38:Y:20151217-G-T DYZ19 A*
hg19:Y:23180551-C-T hg38:Y:21018665-C-T YA*
hg19:Y:24342125-A-G hg38:Y:22195978-A-G P3_t1 A*
hg19:Y:26126087-G-C hg38:Y:23979940-G-C P1_Y1 A*
hg19:Y:26126347-C-G hg38:Y:23980200-C-G P1_Y1 A*
hg19:Y:7685265-C-T hg38:Y:7817224-C-T FT263688 YY+
hg19:Y:15888711-A-AT hg38:Y:13776831-A-AT 8×T+
hg38:Y:10790209-C-T FT431304 +
hg38:Y:11012304-A-T FT393647 +
hg38:Y:11012319-A-C FT393649 +
hg19:Y:22462109-G-A hg38:Y:20300223-G-A BY44880 DYZ19 +
hg19:Y:18602141-C-T hg38:Y:16490261-C-T BY122500 YY+
hg19:Y:3080000-G-A hg38:Y:3211959-G-A FT183320 +
hg19:Y:3680265-G-T hg38:Y:3812224-G-T +
hg19:Y:4233118-A-G hg38:Y:4365077-A-G FT55474 +
hg19:Y:4839717-CAA-C hg38:Y:4971676-CAA-C +
hg19:Y:5055379-A-G hg38:Y:5187338-A-G FT263350 +
hg19:Y:6187157-A-G hg38:Y:6319116-A-G FT184816 IR3_Dst +
hg19:Y:6460074-T-C hg38:Y:6592033-T-C FT184871 +
hg19:Y:7852023-G-A hg38:Y:7983982-G-A FT185390 YY+
hg19:Y:8083595-T-C hg38:Y:8215554-T-C FT185491 YY+
hg19:Y:8987081-T-C hg38:Y:9149472-T-C FT185875 +
hg19:Y:9397973-T-C hg38:Y:9560364-T-C FT185951 YY+
hg19:Y:9983172-G-A hg38:Y:10145563-G-A FT225392 Y+
hg19:Y:10016615-G-A hg38:Y:10179006-G-A FT225391 Y+
hg38:Y:10791564-A-T FT225390 +
hg38:Y:10821307-C-T FT432691 +
hg38:Y:10869218-G-A FT225389 +
hg38:Y:10902391-T-G FT436017 +
hg38:Y:11657352-CGAATGGAATG-C DYZ17 +
hg19:Y:14004369-G-T hg38:Y:11883663-G-T FT186227 YY+
hg19:Y:14234655-G-T hg38:Y:12113949-G-T FT263987 YY+
hg19:Y:14601556-G-C hg38:Y:12489758-G-C FT186592 YY+
hg19:Y:14888023-C-T hg38:Y:12776089-C-T FT186684 YY+
hg19:Y:15006285-C-T hg38:Y:12894370-C-T FT264096 YY+
hg19:Y:15373021-G-C hg38:Y:13261141-G-C FT264140 YY+
hg19:Y:16043151-T-C hg38:Y:13931271-T-C FT187173 YY+
hg19:Y:16560588-T-A hg38:Y:14448708-T-A FT187365 YY+
hg19:Y:16960667-AACAC-A hg38:Y:14848787-AACAC-A +
hg19:Y:17447430-A-G hg38:Y:15335550-A-G FT187729 YY+
hg19:Y:17608207-G-T hg38:Y:15496327-G-T FT187807 YY+
hg19:Y:17665001-C-T hg38:Y:15553121-C-T FT187829 YY+
hg19:Y:18558028-A-C hg38:Y:16446148-A-C FT188157 YY+
hg19:Y:19246302-C-T hg38:Y:17134422-C-T FT188483 YY+
hg19:Y:19436802-GAA-G hg38:Y:17324922-GAA-G +
hg19:Y:19454576-G-T hg38:Y:17342696-G-T FT264647 YY+
hg19:Y:21549380-G-T hg38:Y:19387494-G-T FT264734 YY+
hg19:Y:22235987-TC-T hg38:Y:20074101-TC-T DYZ19 +
hg19:Y:22460481-T-A hg38:Y:20298595-T-A FT457683 DYZ19 +
hg19:Y:22963792-A-G hg38:Y:20801906-A-G FT189263 YY+
hg19:Y:23781909-G-A hg38:Y:21620023-G-A FT189545 Y+
hg19:Y:24458255-G-A hg38:Y:22312108-G-A FT264985 Y+
hg19:Y:20931891-A-G hg38:Y:18770005-A-G FGC7685 P4_Dst *
hg19:Y:5393984-CTG-C hg38:Y:5525943-CTG-C 12×TG*
hg19:Y:7128621-CGTGTGTGTGTGTGT-C hg38:Y:7260580-CGTGTGTGTGTGTGT-C 23×GT*
hg19:Y:17242978-T-TACAC hg38:Y:15131098-T-TACAC 18×AC*
hg19:Y:6149871-TACACAC-T,TAC hg38:Y:6281830-TACACAC-T,TAC IR3_Dst 17×AC*
hg19:Y:6401985-G-A hg38:Y:6533944-G-A *
hg38:Y:56860701-AC-A *
hg19:Y:6024502-A-G hg38:Y:6156461-A-G *
hg38:Y:10890088-T-TTCCAC *
hg19:Y:22253919-T-C hg38:Y:20092033-T-C DYZ19 *
hg19:Y:22254446-T-C hg38:Y:20092560-T-C DYZ19 *
hg19:Y:28808567-G-A hg38:Y:26662420-G-A **
hg19:Y:6124389-A-G hg38:Y:6256348-A-G **
hg19:Y:28345688-C-CAT hg38:Y:26199541-C-CAT P1_gr2 **
hg19:Y:20489738-T-TTC hg38:Y:18327852-T-TTC P5_Dst **
hg19:Y:8057171-A-G hg38:Y:8189130-A-G FT2800 **
hg19:Y:16648115-GTTTT-G hg38:Y:14536235-GTTTT-G 29×T**
hg19:Y:21253589-A-AT hg38:Y:19091703-A-AT **
hg19:Y:16996654-CTTT-C hg38:Y:14884774-CTTT-C 15×T**
hg19:Y:3303128-T-C hg38:Y:3435087-T-C FT183416 **
hg19:Y:4227480-T-C hg38:Y:4359439-T-C **
hg19:Y:4897409-T-C hg38:Y:5029368-T-C **
hg19:Y:17123868-G-A hg38:Y:15011988-G-A **
hg19:Y:17636326-T-C hg38:Y:15524446-T-C **
hg19:Y:21116013-C-T hg38:Y:18954127-C-T FT188658 **
hg19:Y:22461614-T-TA hg38:Y:20299728-T-TA DYZ19 **
hg19:Y:22693537-T-C hg38:Y:20531651-T-C **
hg19:Y:23601486-T-G hg38:Y:21439600-T-G **
hg19:Y:17278285-A-C hg38:Y:15166405-A-C ***
hg19:Y:20712287-T-C hg38:Y:18550401-T-C BY26414 P4_Prx 16×AC***
hg19:Y:3298982-C-T hg38:Y:3430941-C-T ***
hg19:Y:13458834-GCCATT-G hg38:Y:11303158-GCCATT-G 4×CCATT***
hg19:Y:23254488-AAAAT-A hg38:Y:21092602-AAAAT-A 6×AAAT***
hg19:Y:28522376-CTTTTT-C hg38:Y:26376229-CTTTTT-C 18×T***
hg19:Y:2971164-C-T hg38:Y:3103123-C-T ***
hg19:Y:13480377-C-A hg38:Y:11324701-C-A A17123 ***
hg19:Y:2833178-CTTTTT-C hg38:Y:2965137-CTTTTT-C 19×T***
hg19:Y:6046307-T-TA hg38:Y:6178266-T-TA 10×A***
hg19:Y:13480376-G-C hg38:Y:11324700-G-C A17122 ***
hg19:Y:7310571-C-CTT hg38:Y:7442530-C-CTT 21×T***
hg38:Y:10942659-C-T ***
hg19:Y:13705364-T-A hg38:Y:11549688-T-A DYZ17 ***
hg19:Y:13705366-G-C hg38:Y:11549690-G-C DYZ17 ***
hg19:Y:28818172-G-C hg38:Y:26672025-G-C ***
hg19:Y:5399016-ATTT-A hg38:Y:5530975-ATTT-A 18×T***
hg19:Y:13705270-C-T hg38:Y:11549594-C-T FT449099 DYZ17 ***
hg19:Y:15171321-C-T hg38:Y:13059407-C-T ***
hg19:Y:15171322-A-G hg38:Y:13059408-A-G ***
hg19:Y:22949878-CTTTTTT-C hg38:Y:20787992-CTTTTTT-C 23×T***
hg19:Y:21409505-T-A hg38:Y:19247619-T-A ***
hg19:Y:14019453-T-C hg38:Y:11898747-T-C ***
hg19:Y:7018027-ATTT-A,AT hg38:Y:7149986-ATTT-A,AT 24×T***
hg19:Y:3873186-C-CAAA hg38:Y:4005145-C-CAAA 15×A***
hg19:Y:3240677-A-T hg38:Y:3372636-A-T ***
hg19:Y:4346564-TA-T hg38:Y:4478523-TA-T ***
hg19:Y:5223309-A-AC hg38:Y:5355268-A-AC ***
hg38:Y:10914632-T-A ***
hg19:Y:13468171-A-G hg38:Y:11312495-A-G ***
hg19:Y:13476474-T-C hg38:Y:11320798-T-C ***
hg19:Y:13705300-C-A,T hg38:Y:11549624-C-A,T DYZ17 ***
hg19:Y:16364149-A-T hg38:Y:14252269-A-T ***
hg19:Y:16909178-C-CT,CTT hg38:Y:14797298-C-CT,CTT 16×T***
hg19:Y:17129987-T-A hg38:Y:15018107-T-A ***
hg19:Y:17158968-CTTT-C,CT hg38:Y:15047088-CTTT-C,CT 26×T***
hg19:Y:18039392-TTTTTGC-T,TTTGC hg38:Y:15927512-TTTTTGC-T,TTTGC ***
hg19:Y:18147529-TTTTTTTTTG-T hg38:Y:16035649-TTTTTTTTTG-T ***
hg19:Y:22101027-A-C hg38:Y:19939141-A-C ***
hg19:Y:22189233-AC-A,AA hg38:Y:20027347-AC-A,AA ***
hg19:Y:28808588-T-A,G hg38:Y:26662441-T-A,G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN762741497827993923738293334
Used in age calculations1497827993923738293334
Counts of SNPs2723
Variant counts last updated 2025-05-19 03:10:28.


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