Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S699 > S756 > Z16328 > FGC32449 > ~22261318-T-G > BY23069 > Y33315

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B584462
13139355-C-T 10628841-C-T A*
18098741-C-CT 15986861-C-CT 10×TA*
28817003-G-A 26670856-G-A A*
3433314-A-G 3565273-A-G A*
26250750-G-C 24104603-G-C P1_Y1 A*
3110668-G-A 3242627-G-A A*
13139366-A-G 10628852-A-G A*
22595908-C-CT 20434022-C-CT 9×TA*
2918624-T-C 3050583-T-C A*
26066360-G-GT 23920213-G-GT P1_Y1 13×TA*
6216447-C-T 6348406-C-T IR3_Dst A*
58978077-C-T 56831930-C-T A*
13139356-A-G 10628842-A-G A*
13704282-T-A 11548606-T-A BY89111 +
23053146-G-C 20891260-G-C FT257831 YY+
22203602-A-T 20041716-A-T FT257721 YY+
10014624-T-G 10177015-T-G Y+
23261756-C-G 21099870-C-G FT257876 YY+
15732853-G-A 13620973-G-A FT117207 YY+
23873035-A-G 21711149-A-G FT257959 Y+
7661612-T-C 7793571-T-C FT256243 YY+
28458910-TA-T 26312763-TA-T 10×A*
6434688-GA-G 6566647-GA-G *
10622328-CAAA-C 20×A**
24612840-ATTTT-A 22466693-ATTTT-A P3_t2 16×T**
17075313-C-T 14963433-C-T **
5288718-A-G 5420677-A-G **
8002987-G-A 8134946-G-A **
56853568-A-G **
16679306-T-C 14567426-T-C **
20941173-A-AT 18779287-A-AT P4_Dst **
21839968-ATT-A 19678082-ATT-A 12×T**
16245456-TG-T 14133576-TG-T **
15530124-CT-C 13418244-CT-C **
3603491-ATTTTT-A 3735450-ATTTTT-A 24×T**
15181713-A-G 13069799-A-G **
10622214-T-C **
9429480-TAA-T 9591871-TAA-T 18×A**
16356485-A-G 14244605-A-G **
18134772-T-C 16022892-T-C **
20293659-T-TTG 18131773-T-TTG P5_Dst **
6550286-G-GTT 6682245-G-GTT 15×T**
16050952-T-TTC 13939072-T-TTC **
22519061-CATATAT-C 20357175-CATATAT-C **
20746165-T-C 18584279-T-C P4_Prx **
58856089-C-A 56734782-G-T **
18274896-G-A 16163016-G-A P6_Prx **
20293661-T-TG 18131775-T-TG P5_Dst **
19630677-C-A 17518797-C-A P5_Prx **
7217433-TA-T 7349392-TA-T **
16687371-A-AT 14575491-A-AT 9×T**
20028012-G-A 17916132-G-A BY212058 P5_Prx 16×TA**
8314204-G-A 8446163-G-A ***
7150391-C-CA 7282350-C-CA 10×A***
9058720-T-C 9221111-T-C ***
7969316-A-T 8101275-A-T ***
7149832-T-C 7281791-T-C ***
7238938-CTTT-C,CTTTT 7370897-CTTT-C,CTTTT 13×T***
7002184-T-C 7134143-T-C ***
6915796-ATTTTT-A,ATTT 7047755-ATTTTT-A,ATTT 22×T***
6618125-A-G 6750084-A-G ***
10946805-T-A ***
17794282-T-C 15682402-T-C ***
13453229-CA-C,TA 11297553-CA-C,TA ***
18596061-A-AACACACACAC 16484181-A-AACACACACAC 16×AC***
28563637-C-T 26417490-C-T ***
24430021-T-C 22283874-T-C ***
21753216-G-T ***
23480422-A-G 21318536-A-G ***
21691032-A-G 19529146-A-G ***
20865537-T-C 18703651-T-C P4_Dst ***
20123646-G-C 18011766-G-C P5_Dst ***
19436786-GAA-G 17324906-GAA-G ***
18412220-C-A 16300340-C-A P6_Gap ***
13476258-A-T 11320582-A-T ***
17004803-A-T 14892923-A-T ***
16938218-CTTTTT-C,CTTTTTT 14826338-CTTTTT-C,CTTTTTT 19×T***
16933376-A-G 14821496-A-G ***
16682742-T-C 14570862-T-C ***
16305701-G-GGGCA 14193821-G-GGGCA ***
16305696-C-T 14193816-C-T ***
16305691-C-T 14193811-C-T ***
13638574-CAT-C 11482898-CAT-C ***
13563552-G-A 11407876-G-A ***
5521441-T-C 5653400-T-C ***
14852784-C-CT 12740850-C-CT 10×T***
5275971-A-AG 5407930-A-AG ***
22920605-CTTTTT-C 20758719-CTTTTT-C 25×T***
8379349-A-G 8511308-A-G ***
15385860-C-CAA 13273980-C-CAA 14×A***
56871623-T-TAAA 9×A***
13454862-C-T 11299186-C-T ***
17431152-G-GT 15319272-G-GT 10×T***
13470007-G-A 11314331-G-A ***
14825824-CTTTT-C,CTT 12713891-CTTTT-C,CTT 18×T***
13476203-A-G 11320527-A-G ***
17794252-CGTTCTT-C 15682372-CGTTCTT-C ***
4072020-GGAGA-G 4203979-GGAGA-G 13×GA***
13448640-ATTCCATTCCATTCCATTCCATTCCATTCCAT-A,ATCCATTCCATTCCAT 11292964-ATTCCATTCCATTCCATTCCATTCCATTCCAT-A,ATCCATTCCATTCCAT ***
10986943-T-A ***
9836888-GTTTTT-G 9999279-GTTTTT-G 20×T***
13476246-C-T 11320570-C-T ***
5495042-A-AT 5627001-A-AT 10×T***
16293539-ATTT-A 14181659-ATTT-A 16×T***
16778333-CT-C 14666453-CT-C 10×T***
4005057-GTT-G 4137016-GTT-G 13×T***
13875614-CT-C 11754908-CT-C 10×T***
14029897-AATGT-A 11909191-AATGT-A ***
6586715-C-T 6718674-C-T ***
6074690-G-A 6206649-G-A FT52721 ***
2977688-G-A 3109647-G-A FT14758 ***
2960682-G-A 3092641-G-A ***
17323854-TGA-T 15211974-TGA-T ***
22093166-TTGTG-T 19931280-TTGTG-T 22×TG***
11027065-TCTCCA-T ***
14831720-GTTTT-G,GTTT 12719787-GTTTT-G,GTTT 17×T***
4346565-ATTTTTTTT-A,ATT 4478524-ATTTTTTTT-A,ATT 22×T***
3451407-T-C 3583366-T-C ***
3983981-T-A 4115940-T-A ***
3662628-C-T 3794587-C-T ***
3332136-C-A 3464095-C-A ***
3240355-ATT-A,AT 3372314-ATT-A,AT 19×T***
2688524-A-G 2820483-A-G ***
4103175-CTTT-C,CTT 4235134-CTTT-C,CTT 13×T***
3662620-T-C 3794579-T-C ***
21288461-C-CTT 19126575-C-CTT 14×T***
4998922-C-CA 5130881-C-CA 12×A***
5062473-CAA-C,CAAA 5194432-CAA-C,CAAA 21×A***
22241106-T-C 20079220-T-C DYZ19 ***
7131386-A-AC,ACC 7263345-A-AC,ACC 14×C***
13489983-G-T 11334307-G-T ***
13930171-CAAAA-C 11809465-CAAAA-C 21×A***
19146569-CTTTTTT-C,CTTTTT 17034689-CTTTTTT-C,CTTTTT 28×T***
13540253-AACACACAC-A 11384577-AACACACAC-A 23×AC***
13464537-C-G 11308861-C-G ***
13464534-T-A 11308858-T-A ***
15070614-CAAA-C,CAA 12958705-CAAA-C,CAA 20×A***
23086693-A-G 20924807-A-G ***
13469970-G-T 11314294-G-T ***
13476576-G-C 11320900-G-C ***
6607967-A-G 6739926-A-G ***
13931739-CTT-C,CT 11811033-CTT-C,CT 22×T***
13462427-T-G 11306751-T-G ***
13464554-C-A 11308878-C-A ***
13464545-C-A 11308869-C-A ***
15402765-ATT-A,AT 13290885-ATT-A,AT 14×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B5844621469472792239288214288
Used in age calculations1469472792239288214288
Counts of SNPs66
Variant counts last updated 2020-06-25 02:50:53.



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