Tree Position

R-P312/S116 > Z40481 > FGC84729 > DF99/S11987 > FGC16982 > S23540 > FGC16979 > FGC16997 > FGC17003

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
FB8X3
5117777-A-G 5249736-A-G FGC16992 +
13490937-C-T 11335261-C-T FGC17007 +
3770505-C-A 3902464-C-A FGC16985 +
3814092-G-C 3946051-G-C FGC16986 +
5322092-A-G 5454051-A-G FGC16993 +
5691438-A-T 5823397-A-T FGC16994 +
4486061-TG-T 4618020-TG-T +
7942931-A-G 8074890-A-G FGC17000 YY+
7974123-G-A 8106082-G-A FGC17001 YY+
3044658-CT-C 3176617-CT-C +
13132270-A-G 10621756-A-G FGC17005 +
13426756-T-G 11271080-T-G FGC17006 +
9472117-C-T 9634508-C-T FGC17004 +
14009605-G-A 11888899-G-A FGC17010 YY+
21108961-C-G 18947075-C-G FGC17030 Y+
14690754-C-A 12578820-C-A FGC17013 Y+
15759084-T-A 13647204-T-A FGC17021 Y+
17175159-C-A 15063279-C-A FGC17025 YY+
14256190-A-T 12135484-A-T FGC17012 Y+
8002604-G-A 8134563-G-A FGC17002 YY*
19029742-A-G 16917862-A-G FGC17028 Y*
4644268-C-G 4776227-C-G FGC16989 *
4644523-G-T 4776482-G-T FGC16990 *
22365766-C-G 20203880-C-G DYZ19 **
22693660-A-C 20531774-A-C Y43905 **
4275205-G-A 4407164-G-A **
22222422-A-G 20060536-A-G DYZ19 **
7461099-C-G 7593058-C-G IR1_L **
7142509-G-A 7274468-G-A **
7461074-C-G 7593033-C-G IR1_L **
7461149-C-G 7593108-C-G IR1_L **
9304399-G-A 9466790-G-A **
13218966-C-CAAAA 11063290-C-CAAAA 21×A**
15247723-G-T 13135809-G-T **
3137645-G-A 3269604-G-A **
16757043-A-ATTT 14645163-A-ATTT 27×T**
24264513-CTTTT-C 22118366-CTTTT-C P3_b1 18×T**
28336668-C-CAAAAAAA 26190521-C-CAAAAAAA P1_b4 31×A**
26228689-C-CTTTTTTTTTT 24082542-C-CTTTTTTTTTT P1_Y1 27×T**
22421067-CT-GTG 20259181-CT-GTG DYZ19 ***
58836452-CG-AT 56754418-CG-AT ***
58847228-T-A 56743643-A-T ***
58847227-T-A 56743644-A-T ***
28253491-C-CAAAAAAAAAA 26107344-C-CAAAAAAAAAA P1_b4 32×A***
28266695-GGGGCCAGGGCCCGGCTCT-G 26120548-GGGGCCAGGGCCCGGCTCT-G P1_b4 ***
58834345-TG-T 56756524-AC-A ***
58844639-T-C 56746232-A-G ***
58836442-GACTCT-AATTTG 56754424-AGAGTC-CAAATT ***
58836461-C-T 56754410-G-A ***
58848437-C-G 56742434-G-C ***
58846430-TATTCCATTCCATTCA-T 56744424-TTTGAATGGAATGGAA-T ***
58836447-T-G 56754424-A-C ***
58836446-C-T 56754425-G-A ***
58836427-C-A 56754444-G-T ***
58836406-T-C 56754465-A-G ***
58824858-G-T 56766013-C-A ***
28791397-G-T 26645250-G-T ***
28058722-C-A 25912575-C-A P1_Y2 ***
28058640-G-A 25912493-G-A P1_Y2 ***
58847870-T-C 56743001-A-G ***
27413477-ATCCTC-A 25267330-ATCCTC-A P1_g3 ***
58848446-A-T 56742425-T-A ***
58904199-T-G 56686672-A-C ***
27282363-CTGGTACAAG-TTGGGACCTA 25136216-CTGGTACAAG-TTGGGACCTA P1_g3 ***
15733879-C-CAA 13621999-C-CAA 25×A***
13256865-T-TTTG 11101189-T-TTTG ***
58913135-G-T 56677736-C-A ***
58909090-G-C 56681781-C-G ***
58909085-T-C 56681786-A-G ***
58908660-G-C 56682211-C-G ***
58904212-A-G 56686659-T-C ***
58904162-T-G 56686709-A-C ***
27282398-A-G 25136251-A-G P1_g3 ***
27282385-CATGTCAA-TATGCCAG 25136238-CATGTCAA-TATGCCAG P1_g3 ***
58877024-A-G 56713847-T-C ***
58876996-T-A 56713875-A-T ***
58872935-T-C 56717936-A-G ***
58866263-T-C 56724608-A-G ***
27413474-GC-G 25267327-GC-G P1_g3 ***
58866262-A-C 56724609-T-G ***
58859243-A-T 56731628-T-A ***
58848465-G-C 56742406-C-G ***
27367796-A-T 25221649-A-T P1_g3 ***
27282392-A-G 25136245-A-G P1_g3 ***
3587292-C-CTTTTTTT 3719251-C-CTTTTTTT 22×T***
22503954-T-A 20342068-T-A DYZ19 ***
24618792-C-G 22472645-C-G P3_t2 ***
24618786-G-A 22472639-G-A P3_t2 ***
24583326-G-A 22437179-G-A P3_t2 ***
24023674-A-T 21877527-A-T ***
23714317-G-A 21552431-G-A ***
23110419-G-T 20948533-G-T ***
58909164-AGCGGA-G 56681702-TCCGCT-C ***
22505120-T-A 20343234-T-A DYZ19 ***
22504562-A-C 20342676-A-C DYZ19 ***
22495804-A-T 20333918-A-T DYZ19 ***
24649926-A-T 22503779-A-T P3_b2 ***
22486267-G-C 20324381-G-C DYZ19 ***
22481279-C-T 20319393-C-T DYZ19 ***
22421955-C-T 20260069-C-T DYZ19 ***
22420878-A-T 20258992-A-T DYZ19 ***
22420856-T-A 20258970-T-A DYZ19 ***
22420854-A-T 20258968-A-T DYZ19 ***
22420761-T-G 20258875-T-G DYZ19 ***
22420754-A-T 20258868-A-T DYZ19 ***
19668782-T-TAAAAAA 17556902-T-TAAAAAA P5_Prx 33×A***
24618802-T-C 22472655-T-C P3_t2 ***
25567713-C-T 23421566-C-T P1_gr1 ***
27282389-T-C 25136242-T-C P1_g3 ***
27282348-C-T 25136201-C-T P1_g3 ***
27282385-C-T 25136238-C-T P1_g3 ***
27282372-G-A 25136225-G-A P1_g3 ***
27282371-A-T 25136224-A-T P1_g3 ***
27282370-A-C 25136223-A-C P1_g3 ***
27282367-T-G 25136220-T-G P1_g3 ***
27282363-C-T 25136216-C-T P1_g3 ***
58877007-TTT-CTC 56713862-AAA-GAG ***
27282349-A-C 25136202-A-C P1_g3 ***
58877015-GAC-CAT 56713854-GTC-ATG ***
27282347-A-T 25136200-A-T P1_g3 ***
25651212-G-A 23505065-G-A P1_b3 ***
27282345-A-C 25136198-A-C P1_g3 ***
27282342-A-T 25136195-A-T P1_g3 ***
27282340-G-C 25136193-G-C P1_g3 ***
27282336-G-T 25136189-G-T P1_g3 ***
27281219-A-T 25135072-A-T P1_g3 ***
26921998-T-C 24775851-T-C P1_r3 ***
26310816-G-T 24164669-G-T P1_Y1 ***
26114870-G-T 23968723-G-T P1_Y1 ***
26114868-A-C 23968721-A-C P1_Y1 ***
26114867-G-T 23968720-G-T P1_Y1 ***
3205858-C-CAAA 3337817-C-CAAA 15×A***
27282355-AGGAAC-A 25136208-AGGAAC-A P1_g3 ***
3838601-C-CGTTTTTT 3970560-C-CGTTTTTT 31×T***
20544893-GGATTCTGT-AGCCTCTAG 18383007-GGATTCTGT-AGCCTCTAG P5_Dst ***
22231970-CCTACAT-GCTTCATGG 20070084-CCTACAT-GCTTCATGG DYZ19 ***
22231965-C-CT 20070079-C-CT DYZ19 ***
22231958-TAAAGG-T 20070072-TAAAGG-T DYZ19 ***
22226551-CTTTAAGT-TTTCAAGG 20064665-CTTTAAGT-TTTCAAGG DYZ19 ***
21922080-CAAAAAAA-C 19760194-CAAAAAAA-C 23×A***
21464536-C-CAAAAAA 19302650-C-CAAAAAA 19×A***
20637582-TATATATAT-GATAGATAG 18475696-TATATATAT-GATAGATAG P4_Prx ***
20574360-GG-AA 18412474-GG-AA P5_Dst ***
20368162-ATATCTGTGAAGGGGT-GAATATGCAAAGAAAC 18206276-ATATCTGTGAAGGGGT-GAATATGCAAAGAAAC P5_Dst ***
22231993-ACC-A 20070107-ACC-A DYZ19 ***
20368153-TTTTC-CTTTT 18206267-TTTTC-CTTTT P5_Dst ***
20294372-GT-G 18132486-GT-G P5_Dst ***
20294371-TGT-AG 18132485-TGT-AG P5_Dst ***
20116664-A-AAGCT 18004784-A-AAGCT P5_Dst ***
19918178-TTTCCTTCT-ATTACTTTA 17806298-TTTCCTTCT-ATTACTTTA P5_Prx ***
19918169-TACCCTT-GA 17806289-TACCCTT-GA P5_Prx ***
19918164-T-TA 17806284-T-TA P5_Prx ***
19918158-TCCTA-T 17806278-TCCTA-T P5_Prx ***
19918141-CATTTGACTTCGTC-AATCAGTCTAGT 17806261-CATTTGACTTCGTC-AATCAGTCTAGT P5_Prx ***
22231982-AAGTGAG-CTCACTT 20070096-AAGTGAG-CTCACTT DYZ19 ***
22235037-AGATGG-TGAAGA 20073151-AGATGG-TGAAGA DYZ19 ***
19744991-ATTTTTTTT-A 17633111-ATTTTTTTT-A P5_Prx 23×T***
22307195-GT-CG 20145309-GT-CG DYZ19 ***
22366759-ATTGTTTCTC-TTTTTTCCTT 20204873-ATTGTTTCTC-TTTTTTCCTT DYZ19 ***
22365758-GT-G 20203872-GT-G DYZ19 ***
22360131-TTTTT-GTTTG 20198245-TTTTT-GTTTG DYZ19 ***
22359958-CGAA-AGAC 20198072-CGAA-AGAC DYZ19 ***
22359945-AG-CT 20198059-AG-CT DYZ19 ***
22344872-ACTC-G 20182986-ACTC-G DYZ19 ***
22329844-CT-AA 20167958-CT-AA DYZ19 ***
22324973-GTCT-AAAA 20163087-GTCT-AAAA DYZ19 ***
22309404-AAACTGTAGAC-TGGCTGCAGAA 20147518-AAACTGTAGAC-TGGCTGCAGAA DYZ19 ***
22297340-CACTTAACGTTG-GAAGAAAC 20135454-CACTTAACGTTG-GAAGAAAC DYZ19 ***
22236546-TGAAC-GGAAT 20074660-TGAAC-GGAAT DYZ19 ***
22297330-AGTGTTAC-A 20135444-AGTGTTAC-A DYZ19 ***
22297318-ACCTTTACGGT-A 20135432-ACCTTTACGGT-A DYZ19 ***
22297315-CA-C 20135429-CA-C DYZ19 ***
22289494-CTAACA-GTTCCT 20127608-CTAACA-GTTCCT DYZ19 ***
22289475-AC-GT 20127589-AC-GT DYZ19 ***
22267245-TT-GG 20105359-TT-GG DYZ19 ***
22245099-ACATA-GCACT 20083213-ACATA-GCACT DYZ19 ***
22236781-CCGA-GG 20074895-CCGA-GG DYZ19 ***
22236762-CT-AG 20074876-CT-AG DYZ19 ***
19918095-GA-AT 17806215-GA-AT P5_Prx ***
19528524-CAAAAA-C 17416644-CAAAAA-C 18×A***
22367068-CTTCCTTAATGA-TTTCAAGAATTG 20205182-CTTCCTTAATGA-TTTCAAGAATTG DYZ19 ***
25592896-CTCTC-ATATA 23446749-CTCTC-ATATA P1_gr1 ***
24023663-CACA-TACG 21877516-CACA-TACG ***
24408991-A-ACCCCC 22262844-A-ACCCCC 14×C***
6929131-GC-T 7061090-GC-T ***
22420497-C-T 20258611-C-T DYZ19 ***
24618779-T-TG 22472632-T-TG P3_t2 ***
25317070-TAAAAAAAAA-T 23170923-TAAAAAAAAA-T P2_r1 21×A***
5999363-C-CAAAAAAA 6131322-C-CAAAAAAA 20×A***
5512875-C-CAAAAAAA 5644834-C-CAAAAAAA 22×A***
5453891-C-CTTTTT 5585850-C-CTTTTT 19×T***
26114867-GATG-TCTT 23968720-GATG-TCTT P1_Y1 ***
23831252-C-CTTT 21669366-C-CTTT 26×T***
26124427-C-CAAAAAAA 23978280-C-CAAAAAAA P1_Y1 31×A***
5344507-AATTTCTTTC-TTTTTTTTTT 5476466-AATTTCTTTC-TTTTTTTTTT ***
5130497-G-GT 5262456-G-GT 24×T***
26386490-A-AAAAAAAAGAAAAT 24240343-A-AAAAAAAAGAAAAT P1_Y1 ***
26437169-C-CAAA 24291022-C-CAAA P1_Y1 28×A***
27282328-TTCCTG-T 25136181-TTCCTG-T P1_g3 ***
27282336-GG-TGTT 25136189-GG-TGTT P1_g3 ***
4377969-C-TT 4509928-C-TT 19×T***
27282340-GCACTAAACATG-TTTCCTCTCATTCTGTC 25136193-GCACTAAACATG-TTTCCTCTCATTCTGTC P1_g3 ***
7033238-TACA-AAC 7165197-TACA-AAC ***
22949878-CTTTTTTT-C 20787992-CTTTTTTT-C 23×T***
19411884-AACATGGT-GACAGAGC 17300004-AACATGGT-GACAGAGC ***
13467153-CT-C 11311477-CT-C ***
19231319-C-CTTTTTT 17119439-C-CTTTTTT 24×T***
19202763-TAC-AAA 17090883-TAC-AAA ***
18362512-ACTAGG-GCAAAA 16250632-ACTAGG-GCAAAA P6_Prx ***
17130400-CTTTT-C 15018520-CTTTT-C 21×T***
15865946-C-CTT 13754066-C-CTT 37×T***
15374441-G-GTTTTTTTT 13262561-G-GTTTTTTTT 20×T***
15294129-TGCTAT-AAAGCAGG 13182228-TGCTAT-AAAGCAGG ***
14425195-CAAA-C 12304470-CAAA-C 15×A***
13475908-TT-AG 11320232-TT-AG ***
13257299-TTT-ATA 11101623-TTT-ATA ***
7534643-C-CAAAAA 7666602-C-CAAAAA 17×A***
13242241-C-CTTTTTT 11086565-C-CTTTTTT 21×T***
22457192-GTGGTCTTC-ATGGACTTG 20295306-GTGGTCTTC-ATGGACTTG DYZ19 ***
13104555-A-ATCT 10594041-A-ATCT ***
9943885-ATTA-TTTG 10106276-ATTA-TTTG ***
9438099-C-CTTTTTT 9600490-C-CTTTTTT 30×T***
9343983-CTGTGCCG-C 9506374-CTGTGCCG-C ***
9216146-GGAGCGCAAGCCCCACCTAGACCGCA-G 9378537-GGAGCGCAAGCCCCACCTAGACCGCA-G ***
8535204-G-GTTTTT 8667163-G-GTTTTT 19×T***
22739716-C-CAAAA 20577830-C-CAAAA 24×A***
22420751-T-C 20258865-T-C DYZ19 ***
22324785-A-T 20162899-A-T DYZ19 ***
22367055-G-A 20205169-G-A DYZ19 ***
13484531-A-T 11328855-A-T ***
22367102-T-G 20205216-T-G DYZ19 ***
22367094-A-G 20205208-A-G DYZ19 ***
22324765-A-C 20162879-A-C DYZ19 ***
20574355-G-A 18412469-G-A P5_Dst ***
58823348-ATTCA-GATC 56767519-TGAAT-GATC ***
22352889-C-A 20191003-C-A DYZ19 ***
20368176-G-A 18206290-G-A P5_Dst ***
58874506-A-G 56716365-T-C ***
22354889-C-T 20193003-C-T DYZ19 ***
9190971-A-AAC 9353362-A-AAC 18×AC***
22365862-C-A 20203976-C-A DYZ19 ***
13140964-CATTT-C 10630450-CATTT-C ***
7269610-C-CTTTT 7401569-C-CTTTT 22×T***
22364783-G-A 20202897-G-A DYZ19 ***
20574409-C-T 18412523-C-T P5_Dst ***
20574391-A-G 18412505-A-G P5_Dst ***
20574379-T-C 18412493-T-C P5_Dst ***
13485180-A-G 11329504-A-G ***
22420853-T-G 20258967-T-G DYZ19 ***
22364494-G-A 20202608-G-A DYZ19 ***
22226668-T-C 20064782-T-C DYZ19 ***
22292962-TG-GT 20131076-TG-GT DYZ19 ***
9403521-G-GTTTTT 9565912-G-GTTTTT 21×T***
22265856-GT-TA 20103970-GT-TA DYZ19 ***
22226630-C-A 20064744-C-A DYZ19 ***
10094729-C-G 10257120-C-G ***
22351197-T-G 20189311-T-G DYZ19 ***
21556919-C-CTTTT 19395033-C-CTTTT 23×T***
22232094-AGCT-CACG 20070208-AGCT-CACG DYZ19 ***
58833107-G-C 56757764-C-G ***
22354954-CC-GG 20193068-CC-GG DYZ19 ***
58848445-T-C 56742426-A-G ***
22354955-C-G 20193069-C-G DYZ19 ***
22250468-CA-C 20088582-CA-C DYZ19 ***
22328421-T-G 20166535-T-G DYZ19 ***
22496009-G-A 20334123-G-A DYZ19 ***
13467129-C-A 11311453-C-A ***
13734082-T-G 11578406-T-G ***
13697725-G-A 11542049-G-A ***
22505135-CG-AA 20343249-CG-AA DYZ19 ***
22505127-AG-CT 20343241-AG-CT DYZ19 ***
22248286-ACAA-GCAG 20086400-ACAA-GCAG DYZ19 ***
58866260-G-T 56724611-C-A ***
13203955-CATCATTATGG-GATAATGACGGT 11048279-CATCATTATGG-GATAATGACGGT ***
13203843-ACC-GTG 11048167-ACC-GTG ***
59007963-A-ACAAACAAACAAAC 56861816-A-ACAAACAAACAAAC ***
22354884-A-G 20192998-A-G DYZ19 ***
22226649-A-T 20064763-A-T DYZ19 ***
14491320-G-C 12379517-C-. ***
20368170-G-A 18206284-G-A P5_Dst ***
20368169-T-C 18206283-T-C P5_Dst ***
20368166-C-A 18206280-C-A P5_Dst ***
20368163-T-A 18206277-T-A P5_Dst ***
20368162-A-G 18206276-A-G P5_Dst ***
20368157-C-T 18206271-C-T P5_Dst ***
20368153-T-C 18206267-T-C P5_Dst ***
20367933-G-C 18206047-G-C P5_Dst ***
20367892-C-T 18206006-C-T P5_Dst ***
22421679-CCAGTCC-GCAGACA 20259793-CCAGTCC-GCAGACA DYZ19 ***
20368175-G-A 18206289-G-A P5_Dst ***
22481701-G-T 20319815-G-T DYZ19 ***
22421711-A-G 20259825-A-G DYZ19 ***
22420728-T-G 20258842-T-G DYZ19 ***
22352905-G-T 20191019-G-T DYZ19 ***
2729648-C-CTTTT 2861607-C-CTTTT 25×T***
58908655-T-C 56682216-A-G ***
58877000-A-C 56713871-T-G ***
22349359-A-T 20187473-A-T DYZ19 ***
22332813-C-A 20170927-C-A DYZ19 ***
20368174-G-A 18206288-G-A P5_Dst ***
20368177-T-C 18206291-T-C P5_Dst ***
58868604-C-T 56722267-G-A ***
22366594-C-G 20204708-C-G DYZ19 ***
22366782-A-T 20204896-A-T DYZ19 ***
22273676-A-T 20111790-A-T DYZ19 ***
22309544-GTGGT-CTGGG 20147658-GTGGT-CTGGG DYZ19 ***
22309523-AGAA-CTAG 20147637-AGAA-CTAG DYZ19 ***
22309498-CAGGA-AAGGT 20147612-CAGGA-AAGGT DYZ19 ***
13484523-T-G 11328847-T-G ***
20367939-TCT-AC 18206053-TCT-AC P5_Dst ***
58844840-C-A 56746031-G-T ***
22426403-G-T 20264517-G-T DYZ19 ***
22366557-G-T 20204671-G-T DYZ19 ***
20368186-T-G 18206300-T-G P5_Dst ***
22292969-T-A 20131083-T-A DYZ19 ***
20368196-GT-G 18206310-GT-G P5_Dst ***
20368186-TACCAA-GCCCGT 18206300-TACCAA-GCCCGT P5_Dst ***
20367923-ATCTA-TTCTC 18206037-ATCTA-TTCTC P5_Dst ***
20367899-AACA-GACT 18206013-AACA-GACT P5_Dst ***
22241419-C-A 20079533-C-A DYZ19 ***
20368200-A-T 18206314-A-T P5_Dst ***
20368191-A-T 18206305-A-T P5_Dst ***
20368190-A-G 18206304-A-G P5_Dst ***
20368187-A-C 18206301-A-C P5_Dst ***
22226636-A-C 20064750-A-C ZS5238 DYZ19 ***
58836414-G-T 56754457-C-A ***
22366738-T-A 20204852-T-A DYZ19 ***
22223429-G-T 20061543-G-T DYZ19 ***
22245087-T-G 20083201-T-G DYZ19 ***
22245080-A-C 20083194-A-C DYZ19 ***
22236485-A-T 20074599-A-T DYZ19 ***
22232313-G-A 20070427-G-A DYZ19 ***
22231957-G-C 20070071-G-C DYZ19 ***
22227834-T-A 20065948-T-A DYZ19 ***
22227794-T-G 20065908-T-G DYZ19 ***
22226575-T-C 20064689-T-C DYZ19 ***
22226566-A-C 20064680-A-C FGC49773 DYZ19 ***
21170602-G-T 19008716-G-T ***
22273608-G-C 20111722-G-C DYZ19 ***
20704442-C-A 18542556-C-A P4_Prx ***
20574344-A-T 18412458-A-T P5_Dst ***
20294377-A-G 18132491-A-G P5_Dst ***
20202720-C-T 18040834-C-T P5_Dst ***
20202718-A-T 18040832-A-T P5_Dst ***
20116662-A-C 18004782-A-C P5_Dst ***
20011818-T-C 17899938-T-C P5_Prx ***
20011796-C-A 17899916-C-A P5_Prx ***
20011727-G-A 17899847-G-A P5_Prx ***
22265946-C-T 20104060-C-T DYZ19 ***
22291970-T-G 20130084-T-G DYZ19 ***
19918189-T-A 17806309-T-A P5_Prx ***
22329834-G-A 20167948-G-A DYZ19 ***
22365684-T-A 20203798-T-A DYZ19 ***
22360038-C-G 20198152-C-G DYZ19 ***
22356849-G-T 20194963-G-T DYZ19 ***
22352356-C-T 20190470-C-T DYZ19 ***
22352349-C-G 20190463-C-G DYZ19 ***
22349448-G-A 20187562-G-A DYZ19 ***
22342828-G-A 20180942-G-A DYZ19 ***
22332853-A-T 20170967-A-T DYZ19 ***
22330022-T-C 20168136-T-C DYZ19 ***
22324979-T-C 20163093-T-C DYZ19 ***
22292230-C-A 20130344-C-A DYZ19 ***
22324806-G-T 20162920-G-T DYZ19 ***
22226585-G-C 20064699-G-C DYZ19 ***
22324778-A-G 20162892-A-G DYZ19 ***
22324759-A-T 20162873-A-T DYZ19 ***
22309426-G-A 20147540-G-A DYZ19 ***
22309414-C-A 20147528-C-A DYZ19 ***
22297311-G-C 20135425-G-C DYZ19 ***
22292963-G-T 20131077-G-T DYZ19 ***
22292962-T-G 20131076-T-G DYZ19 ***
22292719-G-A 20130833-G-A DYZ19 ***
20011707-G-A 17899827-G-A P5_Prx ***
19793920-G-C 17682040-G-C P5_Prx ***
13475896-A-G 11320220-A-G ***
7481792-A-T 7613751-A-T IR1_L ***
10094739-G-A 10257130-G-A ***
10090653-A-C 10253044-A-C ***
10089916-T-A 10252307-T-A ***
10084452-G-T 10246843-G-T ***
10059006-A-T 10221397-A-T ***
10047237-C-A 10209628-C-A ***
9781755-C-A 9944146-C-A ***
9191036-C-A 9353427-C-A ***
7497138-A-T 7629097-A-T IR1_L ***
7461124-C-G 7593083-C-G IR1_L ***
10094805-G-A 10257196-G-A ***
6388612-C-A 6520571-C-A ***
6299851-T-A 6431810-T-A IR3_Dst ***
6299845-A-C 6431804-A-C IR3_Dst ***
4860930-C-T 4992889-C-T ***
4021380-G-A 4153339-G-A ***
3403260-C-A 3535219-C-A ***
22426393-C-T 20264507-C-T DYZ19 ***
10101396-T-C 10263787-T-C ***
25288792-C-A 23142645-C-A P2_r1 ***
19702973-C-A 17591093-C-A P5_Prx ***
10094799-T-C 10257190-T-C ***
13114388-T-A 10603874-T-A ***
19793915-G-C 17682035-G-C P5_Prx ***
13734791-G-A 11579115-G-A ***
19793913-A-G 17682033-A-G P5_Prx ***
19793908-C-A 17682028-C-A P5_Prx ***
19793903-G-A 17682023-G-A P5_Prx ***
19702982-G-A 17591102-G-A P5_Prx ***
19702979-C-T 17591099-C-T P5_Prx ***
18008636-A-G 15896756-A-G P7_Dst ***
15294057-T-C 13182156-T-C ***
13876555-G-A 11755849-G-A ***
13734801-G-A 11579125-G-A ***
13580611-C-T 11424935-C-T ***
13126081-T-A 10615567-T-A ***
13548665-T-A 11392989-T-A ***
13484598-T-A 11328922-T-A ***
13484562-A-C 11328886-A-C ***
13484537-G-A 11328861-G-A ***
13319707-C-T 11164031-C-T ***
13276381-C-T 11120705-C-T ***
13257299-T-A 11101623-T-A ***
13222711-A-T 11067035-A-T ***
13126110-G-T 10615596-G-T ***
13126099-C-T 10615585-C-T ***
26204619-G-GGTTTTTTAAAA 24058472-G-GGTTTTTTAAAA P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: FB8X3*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs105
Variant counts last updated 2019-10-28 02:36:13.

* BED data not available. Using default values.


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