Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > ZZ63 > Y10968 > A6706 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B13084
20847845-A-G 18685959-A-G P4_Dst A+
4967591-C-T 5099550-C-T A+
56833454-A-G A*
20678452-C-A 18516566-C-A P4_Prx A*
25575541-A-C 23429394-A-C P1_gr1 A*
24260803-G-A 22114656-G-A P3_b1 A*
6209430-G-A 6341389-G-A IR3_Dst A*
19913166-T-C 17801286-T-C P5_Prx A*
20006761-C-T 17894881-C-T P5_Prx A*
8498444-A-G 8630403-A-G FT19917 YY+
7887387-G-A 8019346-G-A BY205963 YY+
7029856-C-T 7161815-C-T FT18891 Y+
7681782-C-T 7813741-C-T FGC12125 YY+
9883467-C-G 10045858-C-G BY206464 YY+
5967415-G-A 6099374-G-A FT18211 +
5753434-A-T 5885393-A-T FT17970 +
8852757-T-C 8984716-T-C FT20188 YY+
16612793-C-A 14500913-C-A FT22856 YY+
9975212-G-A 10137603-G-A Y+
10816750-T-G +
16860560-A-G 14748680-A-G FT23044 YY+
5562556-A-G 5694515-A-G BY205602 +
16037743-A-T 13925863-A-T BY207137 YY+
15724682-G-C 13612802-G-C BY207070 YY+
15566644-C-A 13454764-C-A BY207022 YY+
13694417-C-A 11538741-C-A BY198747 +
14202989-C-T 12082283-C-T FT21145 YY+
14731400-T-C 12619468-T-C FT21592 YY+
5685507-C-A 5817466-C-A FT17893 +
17112983-C-T 15001103-C-T FT23236 YY+
5502542-C-G 5634501-C-G FT17641 +
18900529-T-C 16788649-T-C YY+
23798772-C-T 21636886-C-T F3547 Y+
23280194-A-G 21118308-A-G FT26548 YY+
22476635-G-A 20314749-G-A DYZ19 +
22293656-G-T 20131770-G-T BY216401 DYZ19 +
21504255-A-T 19342369-A-T Z43021 YY+
22002596-T-G 19840710-T-G BY208409 YY+
19510622-A-C 17398742-A-C FT25037 YY+
19262463-G-A 17150583-G-A FT24831 YY+
14835100-GA-G 12723167-GA-G +
17044632-A-G 14932752-A-G BY207414 YY+
18177125-C-T 16065245-C-T FT24134 YY+
17653418-G-A 15541538-G-A FT23680 YY+
2963078-G-C 3095037-G-C FT14747 +
3021634-G-A 3153593-G-A FT14816 +
17497390-G-A 15385510-G-A YY+
3306727-T-C 3438686-T-C FT15142 +
4130662-G-A 4262621-G-A FT16112 +
4240282-C-T 4372241-C-T FT16243 +
15284113-G-T 13172212-G-T FT21913 Y+
18531112-A-G 16419232-A-G P6_Dst *
22316947-T-G 20155061-T-G DYZ19 *
10983043-C-CTCCAT *
24295863-CTTTT-C 22149716-CTTTT-C P3_t1 17×T**
25908937-A-ATC 23762790-A-ATC P1_Y1 **
22526581-G-GA 20364695-G-GA BY1542 8×A**
7277048-G-GAA 7409007-G-GAA 12×A**
22624041-C-G 20462155-C-G **
20801514-C-A 18639628-C-A P4_Prx **
21336730-A-G 19174844-A-G **
15862987-C-A 13751107-C-A **
20869274-G-T 18707388-G-T P4_Dst 8×T**
18135874-C-A 16023994-C-A **
13482190-T-A 11326514-T-A **
13465767-C-G 11310091-C-G **
16863515-G-GT 14751635-G-GT **
3124097-C-T 3256056-C-T **
21371283-C-CT 19209397-C-CT 10×T***
28498866-T-TA,TAA 26352719-T-TA,TAA 13×A***
13459258-T-C 11303582-T-C ***
16336897-G-T 14225017-G-T 23×T***
5275954-CAAAAA-C 5407913-CAAAAA-C 27×A***
22345461-G-T 20183575-G-T DYZ19 ***
22335111-C-A 20173225-C-A DYZ19 ***
22230607-A-G 20068721-A-G DYZ19 ***
13476567-C-T 11320891-C-T ***
8914172-C-CATTATT 9046131-C-CATTATT 13×ATT***
4323244-A-G 4455203-A-G ***
13482120-C-A 11326444-C-A ***
13487359-A-T 11331683-A-T ***
5059186-C-G 5191145-C-G ***
28534940-CTT-C,CT 26388793-CTT-C,CT 18×T***
7179734-GTT-G,GT 7311693-GTT-G,GT 25×T***
24388535-C-CTA 22242388-C-CTA ***
13482138-C-G 11326462-C-G ***
13489615-ACCCACCCCCACCACCACCCA-A,ACACCCCCACCCCAAACC 11333939-ACCCACCCCCACCACCACCCA-A,ACACCCCCACCCCAAACC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B130841514559594869738356310
Used in age calculations1514559594869738356310
Counts of SNPs2624
Variant counts last updated 2020-06-09 03:04:56.



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