Big Tree: Information for FGC11388
Rox2https://sites.google.com/site/rox2cluster/
Lead With SNP: FGC11388.
Upstream Blocks:
Children:
Displays:
Mutations in Block:
| Names | Region | Unc | McDonald BED | combBED | POS-ANC-DER (hg19) | POS-ANC-DER (hg38) | Notes |
|---|---|---|---|---|---|---|---|
| FGC11388 Y8837 | Y | Y | 2851690-A-G | 2983649-A-G | |||
| FGC11368 Y8838 | Y | Y | 7674522-G-A | 7806481-G-A | |||
| Y8398 BY741 | Y | Y | 7907577-C-G | 8039536-C-G | |||
| FGC11373 Y8839 | Y | Y | 8515748-A-G | 8647707-A-G | |||
| Z2735 | 9754791-T-G | 9917182-T-G | |||||
| FGC11395 Y8842 | Y | Y | 14861066-C-A | 12749132-C-A | |||
| FGC11394 Y8400 | Y | Y | 16803628-G-A | 14691748-G-A | |||
| 17323920-G-GA | 15212040-G-GA | ||||||
| FGC11398 Y8403 | Y | Y | 18866228-A-G | 16754348-A-G | |||
| FGC11393 Y8405 | Y | Y | 19069867-A-G | 16957987-A-G | |||
| FGC11411 Y8406 | Y | Y | 19116326-T-C | 17004446-T-C | |||
| FGC11369 Y8407 | Y | Y | 19250454-A-G | 17138574-A-G | |||
| 21477272-TTCATCATTG-T | 19315386-TTCATCATTG-T | ||||||
| FGC11378 Y8408 | Y | Y | 21815867-A-G | 19653981-A-G | |||
| FGC11379 Y8409 | Y | Y | 21826155-G-T | 19664269-G-T | |||
| FGC11413 | Y | Y | 21853938-T-C | 19692052-T-C | |||
| FGC11389 Y8840 | 13825112-G-A | 11704406-G-A | |||||
| BY31278 FGC68443 | 3148382-T-A | 3280341-T-A | |||||
| FGC11367 Y8399 | Y | Y | 14545037-A-G | 12433238-A-G | |||
| FGC11387 Y8401 | Y | 17375416-A-G | 15263536-A-G | ||||
| FGC68444 BY28846 | DYZ19 | 22228859-T-A | 20066973-T-A | ||||
| FGC68442 | DYZ19 | 22223197-G-T | 20061311-G-T | ||||
| FGC11374 Y8397 | Unc† | 4062768-G-C | 4194727-G-C | ||||
| FGC11376 | 4329664-C-G | 4461623-C-G | |||||
| FGC11375 | 4453520-C-T | 4585479-C-T | |||||
| FGC11400 | 4635950-C-T | 4767909-C-T | |||||
| FGC11390 | 5159399-C-T | 5291358-C-T | |||||
| FGC11401 | 5292940-A-T | 5424899-A-T | |||||
| FGC11381 | Y | Y | 6720487-C-T | 6852446-C-T | |||
| FGC11391 | Y | Y | 6744583-G-T | 6876542-G-T | |||
| FGC11392 | Y | Y | 7269305-T-C | 7401264-T-C | |||
| FGC11397 | Y | Y | 7332619-G-A | 7464578-G-A | |||
| FGC11399 | Y | 8176572-G-A | 8308531-G-A | ||||
| FGC11370 | Y | Y | 8774622-G-A | 8906581-G-A | |||
| FGC11372 | 13580439-C-T | 11424763-C-T | |||||
| FGC11386 | Y | 14089989-C-T | 11969283-C-T | ||||
| FGC11385 | Y | 14422221-G-T | 12301496-G-T | ||||
| FGC11404 | Y | 14567377-C-A | 12455577-C-A | ||||
| FGC11377 Y8402 | Y | Y | 17492767-T-G | 15380887-T-G | |||
| FGC12952 | Y | 18244628-T-C | 16132748-T-C | ||||
| FGC11384 | P6_Gap | 18406972-C-T | 16295092-C-T | ||||
| FGC11382 Y8404 | Y | Y | 18911494-A-T | 16799614-A-T | |||
| FGC11371 | Y | Y | 21658486-T-C | 19496600-T-C | |||
| FGC11396 | Y | 21955753-G-T | 19793867-G-T | ||||
| FGC11383 | 28730867-G-C | 26584720-G-C | |||||
| FGC11416 | Y | Y | 23054406-G-A | 20892520-G-A | |||
| FGC11418 | Y | 23225692-C-T | 21063806-C-T | ||||
| P2_r1 | 25211793-C-A | 23065646-C-A | |||||
| P2_r2 | 25501205-G-T | 23355058-G-T |
*Mutations whose exact position can't be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.
†For some mutations, their exact position on the tree is uncertain. The mutation may belong further upstream or all downstream branches may not be positive for it. This is often the case for SNPs/INDELs found in FGC kits or 1kG kits in regions not covered by BigY tests.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.