There are many SNPs in this block that show up in the FGC tested men, but not the BigY tested men. That list of SNPs is: FGC11370, FGC11371, FGC11372, FGC11374, FGC11375, FGC11376, FGC11377, FGC11381, FGC11382, FGC11383, FGC11384, FGC11385, FGC11386, FGC11390, FGC11391, FGC11392, FGC11396, FGC11397, FGC11399, FGC11400, FGC11401, FGC11404, FGC11407, FGC12952, FGC11416 and FGC11418. All of these SNPs except for FGC11416 and FGC11418 show up in the 1000 genomes person, HG00107. Future testing is necessary to determine which of these SNPs belong in this block.

Upstream Blocks:

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z34609 > Z2571 > FGC11380 > FGC11388 (Rox2)

Children:

FGC11414, BY21578, FGC39762, A17453, Y17787, BY166898

Displays:

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The 3 R-FGC11388* men
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The 3 R-FGC11388* men

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The 3 R-FGC11388* men
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The 3 R-FGC11388* men

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Generate a csv format spreadsheet of all downstream mutations.


Just for this block
This block and all downstream blocks
hg19 hg38

Mutations in Block:

NamesRegionUncMcDonald BEDcombBEDPOS-ANC-DER (hg19)POS-ANC-DER (hg38)Notes
FGC11388 Y8837 YY2851690-A-G2983649-A-G
FGC11368 Y8838 YY7674522-G-A7806481-G-A
Y8398 BY741 YY7907577-C-G8039536-C-G
FGC11373 Y8839 YY8515748-A-G8647707-A-G
Z2735 9754791-T-G9917182-T-G
FGC11395 Y8842 YY14861066-C-A12749132-C-A
FGC11394 Y8400 YY16803628-G-A14691748-G-A
17323920-G-GA15212040-G-GA
FGC11398 Y8403 YY18866228-A-G16754348-A-G
FGC11393 Y8405 YY19069867-A-G16957987-A-G
FGC11411 Y8406 YY19116326-T-C17004446-T-C
FGC11369 Y8407 YY19250454-A-G17138574-A-G
21477272-TTCATCATTG-T19315386-TTCATCATTG-T
FGC11378 Y8408 YY21815867-A-G19653981-A-G
FGC11379 Y8409 YY21826155-G-T19664269-G-T
FGC11413 YY21853938-T-C19692052-T-C
FGC11389 Y8840 13825112-G-A11704406-G-A
BY31278 FGC68443 3148382-T-A3280341-T-A
FGC11367 Y8399 YY14545037-A-G12433238-A-G
FGC11387 Y8401 Y17375416-A-G15263536-A-G
FGC68444 BY28846 DYZ19 22228859-T-A20066973-T-A
FGC68442 DYZ19 22223197-G-T20061311-G-T
FGC11374 Y8397 Unc4062768-G-C4194727-G-C
FGC11376 4329664-C-G4461623-C-G
FGC11375 4453520-C-T4585479-C-T
FGC11400 4635950-C-T4767909-C-T
FGC11390 5159399-C-T5291358-C-T
FGC11401 5292940-A-T5424899-A-T
FGC11381 YY6720487-C-T6852446-C-T
FGC11391 YY6744583-G-T6876542-G-T
FGC11392 YY7269305-T-C7401264-T-C
FGC11397 YY7332619-G-A7464578-G-A
FGC11399 Y8176572-G-A8308531-G-A
FGC11370 YY8774622-G-A8906581-G-A
FGC11372 13580439-C-T11424763-C-T
FGC11386 Y14089989-C-T11969283-C-T
FGC11385 Y14422221-G-T12301496-G-T
FGC11404 Y14567377-C-A12455577-C-A
FGC11377 Y8402 YY17492767-T-G15380887-T-G
FGC12952 Y18244628-T-C16132748-T-C
FGC11384 P6_Gap 18406972-C-T16295092-C-T
FGC11382 Y8404 YY18911494-A-T16799614-A-T
FGC11371 YY21658486-T-C19496600-T-C
FGC11396 Y21955753-G-T19793867-G-T
FGC11383 28730867-G-C26584720-G-C
FGC11416 YY23054406-G-A20892520-G-A
FGC11418 Y23225692-C-T21063806-C-T
P2_r1 25211793-C-A23065646-C-A
P2_r2 25501205-G-T23355058-G-T

*Mutations whose exact position can't be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.

For some mutations, their exact position on the tree is uncertain. The mutation may belong further upstream or all downstream branches may not be positive for it. This is often the case for SNPs/INDELs found in FGC kits or 1kG kits in regions not covered by BigY tests.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Data

The data below reveals the progression of changes in the haplotype. These are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are a work in progress, and any suggested modifications are appreciated. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211

Age Analysis - Iain McDonald Method (Work in Progress)

Using the aging method developed by Iain McDonald, the median age of this block is 2793.5 YBP (844 BC). The 95% confidence interval is 1362 BC to 407 BC.
MeasureAge (YBP)
Mean2797.9
Median2793.5
Mode2800.0
Age analysis lasted updated 2017-10-03. Only those men and blocks availble at that time were included in the analysis.
Aging parameters: allBED=16000000 allBED2=11092092 iainBED=10000000 iainBED2=8106579 combBED=8300000 combBED2=8204787 adjNumVars=0