Big Tree: Information for L21/S145


https://www.familytreedna.com/public/R-L21/default.aspx

Lead With SNP: L21/S145.

YSEQ Group 11: If you are R-L21/S145 and have tested with YSEQ, please join YSEQ Group 11.

Upstream Blocks:

R-P312/S116 > Z290 > L21/S145

Children:

A5846, S552

Displays:

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The 3 R-L21/S145* men
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The 3 R-L21/S145* men

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The 3 R-L21/S145* men
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The 3 R-L21/S145* men

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Just for this block
This block and all downstream blocks
hg19 hg38

Mutations in Block:

NamesRegionUncMcDonald BEDcombBEDPositionNotes
L21 S145 M529 YYhg19:Y:15654428-C-G hg38:Y:13542548-C-G
L459 hg19:Y:5275051-C-G hg38:Y:5407010-C-G
FGCLR2132 P1_Y2 hg19:Y:27910109-C-G hg38:Y:25763962-C-G See notes below.
FGCLR2132 P1_Y2
FGCLR2132 P1_Y2
FGCLR2132 P1_Y2

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.


Notes:

hg19:27910109-C-GFGCLR2132
This mutation could be upstream in the Z290 block. The mutation doesn't always show up in BigY 700 results.
In VCF files and other interpretation files, this mutation may appear as any or all of the following possible variants:
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
P1_Y1 - 26052290-G-C 23906143-G-C
-
The exact position of this mutation on the Y chromosome is currently unknown. It could be one of several possibilities, including those listed below:
RegionNamesPOS-ANC-DER (hg19)POS-ANC-DER (hg38)
Z46518
In VCF files and other interpretation files, this mutation may appear as any or all of the following possible variants:
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
Z46518
-
The exact position of this mutation on the Y chromosome is currently unknown. It could be one of several possibilities, including those listed below:
RegionNamesPOS-ANC-DER (hg19)POS-ANC-DER (hg38)
Z46519
In VCF files and other interpretation files, this mutation may appear as any or all of the following possible variants:
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
Z46519
-
The exact position of this mutation on the Y chromosome is currently unknown. It could be one of several possibilities, including those listed below:
RegionNamesPOS-ANC-DER (hg19)POS-ANC-DER (hg38)
Z46527
In VCF files and other interpretation files, this mutation may appear as any or all of the following possible variants:
RegionNamesPOS-REF-ALT (hg19)POS-REF-ALT (hg38)
Z46527

Haplotype Data

The data below reveals the progression of changes in the haplotype. These are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are a work in progress, and any suggested modifications are appreciated. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211

Age Analysis - Iain McDonald Method (Work in Progress)

Using the aging method developed by Iain McDonald, the median age of this block is 4536.09 YBP (2587 BC). The 95% confidence interval is 3185 BC to 2073 BC.
MeasureAge (YBP)
Mean4538.4
Median4536.1
Mode4540.0
Age analysis lasted updated 2017-10-03. Only those men and blocks availble at that time were included in the analysis.
Aging parameters: allBED=21122277 allBED2=15385256 iainBED=10288633 iainBED2=9931852 combBED=8467636 combBED2=8463231 adjNumVars=0