Big Tree: Information for L513/S215/DF1
Lead With SNP: L513/S215/DF1.
Upstream Blocks:
Children:
Displays:
Mutations in Block:
Names | Region | Unc | McDonald BED | combBED | POS-ANC-DER (hg19) | POS-ANC-DER (hg38) | Notes |
---|---|---|---|---|---|---|---|
DF1 L513 S215 | Y | Y | 7340450-C-T | 7472409-C-T | |||
CTS5396 S5196 | Y | Y | 16250226-T-C | 14138346-T-C | |||
S5197 | DYZ19 | 22438184-C-G | 20276298-C-G | ||||
S5191 | P4_Gap | 20832490-T-G | 18670604-T-G | ||||
S469 Z250 | Y | 7001743-G-T | 7133702-G-T | ||||
S5194 | Y | Y | 18151746-C-A | 16039866-C-A | |||
S279 Z249 | 5818205-T-C | 5950164-T-C | |||||
g1 | 25033955-CT-C | 22887808-CT-C |
*Mutations whose exact position can't be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin, The Russian Journal of Genetic Genealogy (Русская версия), Vol 6, No 2 (2014)/Vol 7, No 1 (2015).
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Repeats in Block:
Region | POS-ANC-DER | Names | Count and Motif | Notes |
---|
*Repeats whose exact position can not be determined precisely from NGS tests, such as those in palindromes, are shown with a pink background.
Haplotype Data
The data below reveals the progression of changes in the haplotype. These are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are a work in progress, and any suggested modifications are appreciated. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.
DYS393 | DYS390 | DYS19 | DYS391 | DYS385 | DYS426 | DYS388 | DYS439 | DYS389i | DYS392 | DYS389ii | DYS458 | DYS459 | DYS455 | DYS454 | DYS447 | DYS437 | DYS448 | DYS449 | DYS464 | DYS460 | Y-GATA-H4 | YCAII | DYS456 | DYS607 | DYS576 | DYS570 | CDY | DYS442 | DYS438 | DYS531 | DYS578 | DYF395S1 | DYS590 | DYS537 | DYS641 | DYS472 | DYF406S1 | DYS511 | DYS425 | DYS413 | DYS557 | DYS594 | DYS436 | DYS490 | DYS534 | DYS450 | DYS444 | DYS481 | DYS520 | DYS446 | DYS617 | DYS568 | DYS487 | DYS572 | DYS640 | DYS492 | DYS565 | DYS710 | DYS485 | DYS632 | DYS495 | DYS540 | DYS714 | DYS716 | DYS717 | DYS505 | DYS556 | DYS549 | DYS589 | DYS522 | DYS494 | DYS533 | DYS636 | DYS575 | DYS638 | DYS462 | DYS452 | DYS445 | Y-GATA-A10 | DYS463 | DYS441 | Y-GGAAT-1B07 | DYS525 | DYS712 | DYS593 | DYS650 | DYS532 | DYS715 | DYS504 | DYS513 | DYS561 | DYS552 | DYS726 | DYS635 | DYS587 | DYS643 | DYS497 | DYS510 | DYS434 | DYS461 | DYS435 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P312/S116 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 33 | 15 | 9 | 16 | 12 | 26 | 26 | 19 | 12 | 11 | 13 | 12 | 10 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 |
L21/S145 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 35 | 15 | 9 | 16 | 12 | 25 | 26 | 19 | 12 | 11 | 13 | 12 | 11 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 |
The data below are the haplotypes of the immediate descendent blocks and men. There is one row for each downstream block or man who directly descends from this block. Coloring shows the mutations relative to the most immediate available upstream haplotype.
DYS393 | DYS390 | DYS19 | DYS391 | DYS385 | DYS426 | DYS388 | DYS439 | DYS389i | DYS392 | DYS389ii | DYS458 | DYS459 | DYS455 | DYS454 | DYS447 | DYS437 | DYS448 | DYS449 | DYS464 | DYS460 | Y-GATA-H4 | YCAII | DYS456 | DYS607 | DYS576 | DYS570 | CDY | DYS442 | DYS438 | DYS531 | DYS578 | DYF395S1 | DYS590 | DYS537 | DYS641 | DYS472 | DYF406S1 | DYS511 | DYS425 | DYS413 | DYS557 | DYS594 | DYS436 | DYS490 | DYS534 | DYS450 | DYS444 | DYS481 | DYS520 | DYS446 | DYS617 | DYS568 | DYS487 | DYS572 | DYS640 | DYS492 | DYS565 | DYS710 | DYS485 | DYS632 | DYS495 | DYS540 | DYS714 | DYS716 | DYS717 | DYS505 | DYS556 | DYS549 | DYS589 | DYS522 | DYS494 | DYS533 | DYS636 | DYS575 | DYS638 | DYS462 | DYS452 | DYS445 | Y-GATA-A10 | DYS463 | DYS441 | Y-GGAAT-1B07 | DYS525 | DYS712 | DYS593 | DYS650 | DYS532 | DYS715 | DYS504 | DYS513 | DYS561 | DYS552 | DYS726 | DYS635 | DYS587 | DYS643 | DYS497 | DYS510 | DYS434 | DYS461 | DYS435 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
210379 | 13 | 24 | 14 | 11 | 12-14 | 12 | 12 | 11 | 13 | 13 | 29 | 17 | 9-9 | 11 | 11 | 25 | 15 | 19 | 29 | 14-15-17-17 | 11 | 10 | 19-23 | 14 | 16 | 19 | 18 | 37-39 | 12 | 12 | 9 | 9 | 15-16 | 8 | 10 | 10 | 8 | 11 | 10 | 12 | 22-23 | 16 | 10 | 12 | 12 | 16 | 8 | 12 | 22 | 20 | 13 | 13 | 11 | 13 | 11 | 11 | 12 | 12 | 34 | 15 | 9 | 16 | 12 | 25 | 26 | 20 | 12 | 11 | 13 | 12 | 11 | 9 | 13 | 11 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 12 | 10 | 10 | 20 | 15 | 18 | 13 | 24 | 16 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 |
Age Analysis - Iain McDonald Method (Work in Progress)
Using the aging method developed by Iain McDonald, the median age of this block is 3557.25 YBP (1608 BC). The 95% confidence interval is 2150 BC to 1143 BC.Measure | Age (YBP) |
---|---|
Mean | 3560.5 |
Median | 3557.2 |
Mode | 3560.0 |
Aging parameters: allBED=16000000 allBED2=16000000 iainBED=10000000 iainBED2=10000000 combBED=8300000 combBED2=8300000 adjNumVars=0