Donahue

BigY3: 541766, BigY2: 541766

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > FGC84010 > A541 > S1121 > Z16251 > A1134 > 23642701-T-TA > A804 > A802

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
541766		BigY2
541766
5459014-G-A 5590973-G-A A*
13690152-A-T 11534476-A-T DYZ17 A*
10794271-C-G A*
19575034-T-C 17463154-T-C P5_Prx YA*
17376508-C-T 15264628-C-T Y609 Y+
7652123-C-T 7784082-C-T BY66558 YY++
14439632-A-G 12318905-A-G FT96461 Y+**
15670072-A-G 13558192-A-G FT96597 Y+**
16715702-G-A 14603822-G-A BY109590 YY++
19201912-C-G 17090032-C-G BY127190 YY++
22460354-A-T 20298468-A-T BY220518 DYZ19 ++
22978363-T-A 20816477-T-A FT97220 YY+**
23045277-A-G 20883391-A-G YY+**
23975866-G-C 21829719-G-C BY148931 Y++
4667032-T-C 4798991-T-C FT95449 +
14857153-A-G 12745219-A-G FT96526 YY+
28512425-C-T 26366278-C-T FT97338 +
6001188-T-C 6133147-T-C **
22288266-T-C 20126380-T-C DYZ19 **
4043583-C-A 4175542-C-A *
19522057-T-G 17410177-T-G M222Z2984 AM01911 **
9482683-T-TA 9645074-T-TA 10×A**
21159055-A-C 18997169-A-C **
58829353-C-T 56761518-G-A **
58829355-A-C 56761516-T-G **
6867680-G-GTTTT 6999639-G-GTTTT 18×T**
16893727-C-A 14781847-C-A CTS6437 **
18931179-GT-G 16819299-GT-G 12×T**
8143474-TCTCC-T 8275433-TCTCC-T **
14328849-C-T 12208143-C-T Z11801 M8744 **
16021486-G-A 13909606-G-A FT336547 **
4957816-G-T 5089775-G-T **
8238235-G-T 8370194-G-T **
6753409-A-G 6885368-A-G M8965 **
19377338-AAAAG-A 17265458-AAAAG-A 4×AAAG**
13542316-C-A 11386640-C-A **
6645556-C-A 6777515-C-A **
11029678-A-C **
14743500-C-A 12631569-C-A **
28724387-G-A 26578240-G-A **
10683003-G-A **
10683011-C-A **
10683018-T-G **
10683039-A-T **
10683052-CGATTC-A **
10683063-A-C **
10683064-A-T **
10683070-C-T **
10683072-A-C **
10683075-C-A **
10683113-C-A **
10683125-C-A **
18615932-CTTTT-C 16504052-CTTTT-C 27×T**
10671709-C-A **
10683152-C-T FT428893 **
7608523-C-A 7740482-C-A **
16192704-C-A 14080824-C-A **
11037134-T-TA **
15277054-C-A 13165143-C-A **
10753246-A-T **
27585941-C-A 25439794-C-A P1_Y2 **
9511393-G-T 9673784-G-T **
10845674-TCCATTC-T **
16476375-C-G 14364495-C-G **
10659506-C-A **
10797739-C-G **
10797750-T-G **
10911665-G-A **
15324081-C-A 13212199-C-A **
10796167-C-T FT431573 **
10974010-T-A **
19418205-T-TA 17306325-T-TA 9×A**
20332148-C-G 18170262-C-G P5_Dst **
14310843-C-A 12190137-C-A **
10962554-C-A **
13480462-T-C 11324786-T-C **
10911678-T-A **
3640801-C-A 3772760-C-A **
16102033-GT-G 13990153-GT-G P8_Prx **
2840138-C-A 2972097-C-A **
28687573-C-A 26541426-C-A **
10911631-C-A **
10911634-A-G **
10911648-T-A **
10911649-G-A FT436326 **
10911650-T-C **
10911651-C-A **
17596395-T-TAA 15484515-T-TAA 15×A**
24751204-G-T 22605057-G-T P3_b2 **
22335244-G-T 20173358-G-T DYZ19 **
11029744-T-A **
13487804-C-A 11332128-C-A **
9453973-C-A 9616364-C-A **
9847289-A-ATT 10009680-A-ATT 28×T**
10989440-C-T **
10989445-C-G **
10924296-C-G **
10940255-C-A **
13461566-C-T 11305890-C-T **
21368410-C-A 19206524-C-A **
28585791-C-A 26439644-C-A **
10953235-C-T **
18263606-C-A 16151726-C-A **
13317983-C-A 11162307-C-A A17120 **
10883746-G-T **
10671721-A-C **
14937028-AT-A 12825093-AT-A 9×T**
7217438-A-C 7349397-A-C **
22800663-C-A 20638777-C-A **
20799445-T-A 18637559-T-A P4_Prx **
16050000-C-A 13938120-C-A **
16180340-C-A 14068460-C-A **
17789788-CT-C 15677908-CT-C 9×T**
15842384-TA-T 13730504-TA-T 10×A**
10953209-A-C **
56728168-G-T **
4957178-C-A 5089137-C-A **
15957075-C-A 13845195-C-A **
6983745-C-A 7115704-C-A **
5586667-G-T 5718626-G-T **
21238701-C-A 19076815-C-A **
17042968-C-A 14931088-C-A **
10764901-C-A **
10935628-A-T **
10970656-T-A **
9967088-C-A 10129479-C-A **
7306374-C-A 7438333-C-A **
10693572-C-A **
56728181-T-A **
10753211-A-ACTTCT **
10753225-C-CT **
10753230-CA-T **
10976938-C-T **
7323057-C-A 7455016-C-A **
22549982-C-A 20388096-C-A **
18648653-C-A 16536773-C-A **
10924315-T-A **
14526821-C-A 12415022-C-A **
10691950-C-A **
10975758-T-C **
10899951-C-CGGAAG **
7969969-T-G 8101928-T-G **
14479467-C-A 12358736-C-A **
15229498-C-A 13117584-C-A **
15947206-C-A 13835326-C-A **
14800023-C-A 12688094-C-A **
19677421-G-T 17565541-G-T P5_Prx **
16749725-G-T 14637845-G-T 16×T**
17602430-A-T 15490550-A-T **
15386430-T-C 13274550-T-C **
6791150-C-A 6923109-C-A **
18188076-C-A 16076196-C-A **
21809966-C-A 19648080-C-A **
10935638-A-G **
10985250-A-T **
8274118-C-A 8406077-C-A **
22772814-T-TA 20610928-T-TA 9×A**
11025830-C-A **
15986752-C-A 13874872-C-A **
18384293-C-A 16272413-C-A P6_Gap **
15816306-T-C 13704426-T-C **
14520726-C-A 12408927-C-A **
11014584-G-T **
7159179-C-A 7291138-C-A **
8878956-G-T 9010915-G-T **
16279610-C-A 14167730-C-A **
10997733-C-G **
22865233-C-A 20703347-C-A **
14700231-G-A 12588297-G-A **
14700238-A-G 12588304-A-G **
6667385-C-A 6799344-C-A **
10941721-C-A **
17014362-C-A 14902482-C-A **
14827815-C-A 12715882-C-A **
7701193-C-A 7833152-C-A **
15733667-C-A 13621787-C-A **
10876011-C-A **
56846946-C-A **
10801417-C-A **
2859654-C-A 2991613-C-A **
7362659-C-A 7494618-C-A **
18783879-C-A 16671999-C-A **
14821877-C-A 12709944-C-A 11×A**
20641611-GA-G 18479725-GA-G P4_Prx **
17739799-C-A 15627919-C-A **
4442921-C-A 4574880-C-A **
10755119-T-C **
7103014-C-A 7234973-C-A **
5367889-G-T 5499848-G-T **
4174913-C-A 4306872-C-A **
4936639-C-A 5068598-C-A **
15324912-C-A 13213030-C-A **
15774307-G-T 13662427-G-T **
15280423-C-A 13168522-C-A **
9441706-C-A 9604097-C-A **
14518413-C-A 12406614-C-A **
14700237-C-T 12588303-C-T **
16551157-C-A 14439277-C-A **
6764664-C-A 6896623-C-A **
14225392-C-A 12104686-C-A **
13871895-C-A 11751189-C-A **
21751663-C-A 19589777-C-A **
2840132-C-A 2972091-C-A **
19365498-C-A 17253618-C-A **
2960122-G-T 3092081-G-T **
3164133-C-T 3296092-C-T **
3490308-G-T 3622267-G-T **
4632877-G-T 4764836-G-T **
4638372-G-T 4770331-G-T **
4920248-G-T 5052207-G-T **
5336351-G-T 5468310-G-T **
5551175-C-A 5683134-C-A **
5560467-C-A 5692426-C-A **
5586665-C-A 5718624-C-A **
5586706-G-T 5718665-G-T **
5586711-G-T 5718670-G-T **
5586712-G-T 5718671-G-T **
5775385-C-A 5907344-C-A **
5861257-C-A 5993216-C-A **
6132379-T-A 6264338-T-A **
6286894-G-C 6418853-G-C IR3_Dst **
6395688-T-C 6527647-T-C **
6410118-G-T 6542077-G-T **
6542577-C-A 6674536-C-A **
6780869-TCAA-T 6912828-TCAA-T **
6808167-G-T 6940126-G-T **
6891964-C-A 7023923-C-A **
7044061-A-G 7176020-A-G **
7113631-A-G 7245590-A-G **
7125961-G-T 7257920-G-T **
7172325-C-T 7304284-C-T **
7209148-C-A 7341107-C-A **
7347907-A-G 7479866-A-G **
7374825-A-G 7506784-A-G **
7416804-C-A 7548763-C-A **
7469815-C-A 7601774-C-A IR1_L **
7566247-T-A 7698206-T-A **
7717849-A-T 7849808-A-T **
7725762-TTAGGTTC-T 7857721-TTAGGTTC-T **
7974415-C-A 8106374-C-A **
7979521-G-A 8111480-G-A **
8042128-C-A 8174087-C-A **
8070068-C-A 8202027-C-A **
8080752-A-T 8212711-A-T **
8080762-G-A 8212721-G-A **
8129281-G-T 8261240-G-T **
8151410-A-G 8283369-A-G 10×T**
8705843-C-A 8837802-C-A **
8717053-T-G 8849012-T-G **
8776413-C-A 8908372-C-A **
8776649-T-C 8908608-T-C **
9075804-T-C 9238195-T-C **
9577427-T-C 9739818-T-C IR3_Prx **
9926361-C-G 10088752-C-G **
10008124-C-A 10170515-C-A **
10627969-A-G **
10660352-C-A **
10671725-T-G **
10782515-A-G **
10786614-T-A **
10815307-A-G **
10839698-GTTCC-G **
10840227-C-T **
10842326-C-T **
10845644-TCC-T **
10847292-C-A **
10859866-C-T **
10861708-G-T **
10868744-A-T **
10870135-G-A **
10892275-C-A **
10899588-G-A FT150310 **
10953196-A-ACACCTATTACATTC **
10953212-C-A **
10991265-C-CATTTGGGTTA **
10997729-C-G **
11005510-C-CCAT **
11007827-G-T **
11016945-C-A **
13202073-G-T 11046397-G-T **
13263150-C-A 11107474-C-A **
13294630-G-T 11138954-G-T **
13328537-T-A 11172861-T-A **
13409410-C-A 11253734-C-A **
13603650-C-A 11447974-C-A **
11664068-A-T DYZ17 **
11664083-A-T DYZ17 **
11675457-G-T DYZ17 **
13919375-A-T 11798669-A-T **
13921670-T-A 11800964-T-A **
14006771-A-G 11886065-A-G FGC69840 **
14102508-C-A 11981802-C-A **
14106889-G-T 11986183-G-T **
14191179-G-A 12070473-G-A **
14220406-C-A 12099700-C-A **
14328850-A-G 12208144-A-G **
14339852-C-A 12219147-C-A **
14341201-A-C 12220496-A-C **
14341206-G-C 12220501-G-C **
14341212-C-A 12220507-C-A **
14341216-A-G 12220511-A-G **
14418999-C-A 12298274-C-A **
14504673-G-A 12392878-G-A **
14505182-C-A 12393387-C-A **
14507723-G-T 12395928-G-T **
14563963-C-A 12452163-C-A **
14649602-G-A 12537667-G-A **
14698582-A-T 12586648-A-T **
14886261-G-A 12774327-G-A **
14945737-C-A 12833811-C-A **
14951516-T-G 12839590-T-G **
15047688-C-A 12935779-C-A **
15060867-C-A 12948959-C-A **
15109894-T-G 12997981-T-G **
15230215-C-A 13118301-C-A **
15230220-A-G 13118306-A-G **
15274555-A-G 13162644-A-G **
15698195-C-A 13586315-C-A **
15731445-C-A 13619565-C-A **
15740025-C-A 13628145-C-A **
16019255-G-T 13907375-G-T **
16027219-G-A 13915339-G-A **
16033506-T-G 13921626-T-G **
16050066-G-T 13938186-G-T **
16213508-T-C 14101628-T-C **
16280993-C-A 14169113-C-A **
16283295-C-A 14171415-C-A **
16329041-C-A 14217161-C-A **
16407028-TA-T 14295148-TA-T **
16616081-C-A 14504201-C-A **
16631736-C-A 14519856-C-A **
16713184-A-G 14601304-A-G **
16775584-A-G 14663704-A-G **
16867628-C-A 14755748-C-A **
16923192-T-G 14811312-T-G **
16926075-C-T 14814195-C-T **
16948445-G-A 14836565-G-A **
17188448-C-A 15076568-C-A **
17208315-C-A 15096435-C-A **
17246834-C-A 15134954-C-A **
17320039-A-C 15208159-A-C **
17415267-C-A 15303387-C-A **
17421014-T-C 15309134-T-C **
17517061-C-A 15405181-C-A **
17739101-C-A 15627221-C-A **
17807396-A-T 15695516-A-T **
17840552-C-A 15728672-C-A **
18603458-C-A 16491578-C-A **
18636092-G-T 16524212-G-T **
18643952-C-A 16532072-C-A **
18682573-C-A 16570693-C-A **
18707731-C-A 16595851-C-A **
18751972-G-T 16640092-G-T **
18795177-C-A 16683297-C-A **
18843993-A-G 16732113-A-G **
18910854-C-A 16798974-C-A **
19055118-T-C 16943238-T-C **
19184503-T-C 17072623-T-C **
19228040-C-A 17116160-C-A **
19263095-C-A 17151215-C-A **
19283095-T-C 17171215-T-C **
19388525-T-A 17276645-T-A **
19395105-T-A 17283225-T-A **
19395106-G-C 17283226-G-C **
19411816-G-T 17299936-G-T **
19548334-C-A 17436454-C-A **
19720840-G-T 17608960-G-T P5_Prx **
19720852-T-A 17608972-T-A P5_Prx **
19997029-G-C 17885149-G-C P5_Prx **
19997048-T-A 17885168-T-A P5_Prx **
19997061-T-A 17885181-T-A P5_Prx **
19997073-T-A 17885193-T-A P5_Prx **
19997079-T-A 17885199-T-A P5_Prx **
19997080-G-C 17885200-G-C P5_Prx **
19997086-T-A 17885206-T-A P5_Prx **
19997092-T-A 17885212-T-A P5_Prx **
19997095-G-C 17885215-G-C P5_Prx **
19997107-G-C 17885227-G-C P5_Prx **
19997110-T-A 17885230-T-A P5_Prx **
20107300-A-AAG 17995420-A-AAG P5_Dst **
20981935-AAAAAGG-CCACCCC 18820049-AAAAAGG-CCACCCC P4_Dst **
21035998-T-C 18874112-T-C **
21079576-C-A 18917690-C-A **
21082348-G-T 18920462-G-T 4×GGAA**
21140085-G-A 18978199-G-A **
21156870-C-A 18994984-C-A **
21287065-G-A 19125179-G-A **
21288124-C-A 19126238-C-A **
21478037-C-A 19316151-C-A **
21545784-C-A 19383898-C-A **
21624152-C-A 19462266-C-A **
21713869-G-T 19551983-G-T **
21833891-G-T 19672005-G-T **
21875839-G-T 19713953-G-T **
21902778-A-G 19740892-A-G **
22043483-A-T 19881597-A-T **
22063132-T-C 19901246-T-C **
22179293-C-A 20017407-C-A **
22200403-A-G 20038517-A-G **
22207616-A-T 20045730-A-T **
22300564-C-A 20138678-C-A DYZ19 **
22316247-T-C 20154361-T-C DYZ19 **
22562660-C-A 20400774-C-A **
22811174-C-A 20649288-C-A **
22870704-C-A 20708818-C-A **
23023088-T-A 20861202-T-A **
23089683-A-T 20927797-A-T **
23368850-C-T 21206964-C-T **
23387508-T-A 21225622-T-A **
23419609-G-T 21257723-G-T **
23508542-C-A 21346656-C-A **
23610184-C-A 21448298-C-A **
24399923-T-C 22253776-T-C **
24431795-A-T 22285648-A-T **
24603241-A-T 22457094-A-T P3_t2 **
24881346-G-T 22735199-G-T g1 **
25968128-A-T 23821981-A-T P1_Y1 **
26247985-G-T 24101838-G-T P1_Y1 **
27797290-A-T 25651143-A-T P1_Y2 **
27797292-A-T 25651145-A-T P1_Y2 **
27797324-A-T 25651177-A-T P1_Y2 **
27797327-A-T 25651180-A-T P1_Y2 **
28497401-C-A 26351254-C-A **
28552340-G-T 26406193-G-T **
28623131-C-A 26476984-C-A **
9950470-G-T 10112861-G-T **
10080171-C-T 10242562-C-T **
17081225-A-T 14969345-A-T **
20621392-G-T 18459506-G-T P4_Prx **
20713670-C-A 18551784-C-A P4_Prx **
24602219-T-AA 22456072-T-AA P3_t2 **
27829083-G-T 25682936-G-T P1_Y2 **
7921535-G-GT 8053494-G-GT 9×T***
13489206-C-A 11333530-C-A ***
28784434-T-A 26638287-T-A ***
10764586-A-G ***
15904149-CAAAA-C 13792269-CAAAA-C 20×A***
11022954-C-A ***
2777828-TAAA-T,TAA 2909787-TAAA-T,TAA 15×A***
28786679-GAA-G 26640532-GAA-G ***
7165183-AT-A 7297142-AT-A 8×T***
10685726-C-A ***
5785654-TAAA-T 5917613-TAAA-T 24×A***
10845668-TTCCA-T ***
22833571-AATT-A 20671685-AATT-A 5×ATT***
22752519-CAAA-C 20590633-CAAA-C 16×A***
2860458-GTTT-G 2992417-GTTT-G 18×T***
15422098-CAAA-C,CAA 13310218-CAAA-C,CAA 20×A***
19333229-ATTTT-A 17221349-ATTTT-A 21×T***
8549032-GTTTT-G 8680991-GTTTT-G 23×T***
8649749-C-A 8781708-C-A ***
7970860-CT-C,CTT 8102819-CT-C,CTT 12×T***
13474645-A-G 11318969-A-G ***
28369979-ATT-A 26223832-ATT-A P1_gr2 ***
10892474-T-A ***
8287966-GA-G 8419925-GA-G 9×A***
11028303-T-G ***
13489491-G-A,T 11333815-G-A,T ***
7000468-C-A 7132427-C-A ***
11020274-A-T ***
14482948-C-A 12362217-C-A ***
4302143-C-A 4434102-C-A ***
6667819-CT-C 6799778-CT-C 9×T***
10843666-C-G ***
10843678-C-G ***
11002098-C-A ***
13865739-C-A 11745033-C-A DYZ17 ***
23377719-C-A 21215833-C-A ***
21542036-C-A 19380150-C-A ***
7977580-C-A 8109539-C-A ***
27263213-G-T 25117066-G-T P1_g3 ***
8902141-G-T 9034100-G-T ***
17278273-CGAAAGAAAGAAA-C,CGAAA 15166393-CGAAAGAAAGAAA-C,CGAAA 16×GAAA***
19565634-TAAA-T 17453754-TAAA-T 14×A***
14407169-CT-C,CTT 12286467-CT-C,CTT 16×T***
11655538-C-A DYZ17 ***
6776497-CAAAA-C,CAA 6908456-CAAAA-C,CAA 28×A***
16939825-G-T 14827945-G-T ***
24500297-C-A 22354150-C-A ***
2651303-CAA-C,CAAA 2783262-CAA-C,CAAA 16×A***
19106779-C-A 16994899-C-A ***
3599168-C-A 3731127-C-A ***
13202908-C-A 11047232-C-A BY84323 ***
17238197-C-A 15126317-C-A ***
11015169-ATATCC-A,CTATCC ***
15940510-A-AT 13828630-A-AT 9×T***
14822318-C-A 12710385-C-A ***
7001658-C-CT 7133617-C-CT 11×T***
15366043-G-T 13254163-G-T ***
10876957-C-A ***
22201016-C-A 20039130-C-A ***
2783236-G-GA 2915195-G-GA 9×A***
4271980-C-A 4403939-C-A ***
7215073-C-A 7347032-C-A ***
7230347-C-A 7362306-C-A ***
7519021-C-T 7650980-C-T ***
8341231-C-A 8473190-C-A ***
8676899-C-A 8808858-C-A ***
8689321-C-A 8821280-C-A ***
9020439-CTGTG-C 9182830-CTGTG-C 10×TG***
9900492-A-AAT 10062883-A-AAT ***
10010942-G-T 10173333-G-T ***
10662258-T-A ***
10687599-C-G ***
10764548-TTCAC-T,TT ***
10778868-G-T ***
10791140-G-T ***
10807204-A-G ***
10969430-C-A ***
13255589-C-T 11099913-C-T ***
13927575-C-A 11806869-C-A ***
13938994-C-T 11818288-C-T ***
14092050-C-A 11971344-C-A ***
14278235-C-A 12157529-C-A ***
14454387-C-A 12333660-C-A ***
14464804-C-A 12344077-C-A ***
14720564-G-A 12608632-G-A ***
15209500-C-A 13097586-C-A ***
15425420-C-A 13313540-C-A ***
15843497-C-A 13731617-C-A ***
16333749-C-A 14221869-C-A ***
16375114-C-A 14263234-C-A ***
16520584-C-A 14408704-C-A ***
16594535-A-G 14482655-A-G ***
16612805-ATTT-A,ATT 14500925-ATTT-A,ATT 16×T***
16829466-C-A 14717586-C-A ***
16856846-C-A 14744966-C-A ***
16913443-A-G 14801563-A-G ***
17475310-C-A 15363430-C-A ***
18007973-A-G 15896093-A-G P7_Gap ***
18336231-CAAAT-C 16224351-CAAAT-C P6_Prx 4×AAAT***
18559727-CAA-C 16447847-CAA-C 10×A***
18572066-T-C 16460186-T-C ***
18635177-C-A 16523297-C-A ***
18646626-T-C 16534746-T-C ***
18694663-C-A 16582783-C-A ***
18709885-C-A 16598005-C-A ***
18915668-C-A 16803788-C-A ***
19308481-A-G 17196601-A-G ***
21220475-C-G 19058589-C-G ***
21398027-C-A 19236141-C-A ***
21723795-T-A 19561909-T-A ***
23262359-C-T 21100473-C-T ***
23284476-C-A 21122590-C-A ***
23452003-A-G 21290117-A-G ***
23560719-C-A 21398833-C-A ***
23997775-G-T 21851628-G-T ***
24420846-A-G 22274699-A-G ***
28594092-C-A 26447945-C-A ***
28649439-C-A 26503292-C-A ***
28760643-G-A 26614496-G-A ***
3394337-CTTTTT-C 3526296-CTTTTT-C 21×T***
4446635-TAAAA-T 4578594-TAAAA-T 27×A***
9806703-C-T 9969094-C-T ***
13448668-CCATT-C 11292992-CCATT-C ***
6597314-C-A 6729273-C-A ***
7285562-A-G 7417521-A-G ***
10654580-A-T ***
10654597-T-C ***
15380958-T-A 13269078-T-A ***
15424283-AG-A 13312403-AG-A ***
15834295-A-G 13722415-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.