Thorpe

BigY3: B63883, BigY2: B63883
MDKA Birth: United States > New York

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > BY23559 > BY23524

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B63883		BigY2
B63883
5087317-C-T 5219276-C-T A+
5303229-A-G 5435188-A-G FGC69293 A+
5054809-G-A 5186768-G-A A+
25967840-G-A 23821693-G-A P1_Y1 A*A*
26073163-C-T 23927016-C-T P1_Y1 A*A*
7077573-C-A 7209532-C-A YYA*
18115089-C-GT 16003209-C-GT ***A*
19628934-T-C 17517054-T-C P5_Prx A*A*
19905163-T-A 17793283-T-A P5_Prx A*A*
20027508-T-C 17915628-T-C P5_Prx A*A*
24272031-T-C 22125884-T-C P3_b1 A*A*
26366229-T-C 24220082-T-C P1_Y1 A*A*
21003791-G-A 18841905-G-A P4_Dst YA*
23176164-C-A 21014278-C-A YA*
26201181-T-C 24055034-T-C P1_Y1 A*
26290547-T-C 24144400-T-C P1_Y1 A*
26360831-G-T 24214684-G-T P1_Y1 A*
27596207-A-G 25450060-A-G P1_Y2 A*
5393986-G-C 5525945-G-C BY414 8113493-C-AFGC60233 +
2825206-G-T 2957165-G-T BY152324 YY12×T++
2868148-C-T 3000107-C-T BY56925 YY++
6794066-G-T 6926025-G-T BY152464 YY++
6962472-A-C 7094431-A-C BY152505 YY++
7065836-G-A 7197795-G-A BY63135 YY++
7661784-A-G 7793743-A-G BY164637 YY++
8285448-C-T 8417407-C-T BY160404 YY+**
13200166-C-A 11044490-C-A BY84291 ++
14572209-G-A 12460409-G-A BY96524 YY++
15032284-C-T 12920372-C-T BY153785 YY++
15532083-C-T 13420203-C-T BY102309 YY++
15732054-CAT-C 13620174-CAT-C +**
16222973-T-A 14111093-T-A BY154059 YY++
16924550-C-A 14812670-C-A BY165118 YY++
17242377-A-G 15130497-A-G BY154334 YY++
17344393-G-C 15232513-G-C BY114018 YY++
17544377-C-T 15432497-C-T BY154397 YY++
18083273-A-T 15971393-A-T BY154565 YY++
18115210-C-T 16003330-C-T BY159460 YY+
18115215-G-A 16003335-G-A BY159459 YY+
18115227-TCTA-T 16003347-TCTA-T +
21865453-G-GC 19703567-G-GC +***
22037567-G-A 19875681-G-A BY137246 YY+**
22190175-C-T 20028289-C-T BY138339 YY++
22515866-A-T 20353980-A-T BY138616 Y++
22793186-A-G 20631300-A-G YY+**
23160666-G-A 20998780-G-A BY143503 Y++
28773168-C-CAAA 26627021-C-CAAA ++
10746025-T-C FT59720 +
3877480-G-A 4009439-G-A FT52081 +
4211505-A-C 4343464-A-C FT52179 +
5663752-C-T 5795711-C-T FT2658 +
5700362-A-G 5832321-A-G FT2661 +
5993223-G-T 6125182-G-T FT83235 +
6353595-G-A 6485554-G-A FT2710 +
7211281-T-G 7343240-T-G FT2754 YY+
9953329-T-C 10115720-T-C FT59722 Y+
10744865-C-G FT59721 +
11007739-A-C FT59719 +
15585174-ACT-A 13473294-ACT-A +
16295824-T-A 14183944-T-A FT3006 YY+
17244598-C-T 15132718-C-T FT3049 Y+
17433292-T-C 15321412-T-C FT3059 Y+
21583369-G-A 19421483-G-A FT3181 Y+
18115025-G-C 16003145-G-C YY*
18115215-G-GTGTA 16003335-G-GTGTA *
22318628-T-C 20156742-T-C DYZ19 **
20640381-C-T 18478495-C-T P4_Prx *
56868159-A-T *
14658389-T-C 12546454-T-C PR1530 **
23807600-G-A 21645714-G-A **
8691777-G-A 8823736-G-A ZS5070 **
58985287-C-G 56839140-C-G **
7003007-C-T 7134966-C-T FT390165 **
13858454-G-T 11737748-G-T DYZ17 **
28780290-C-T 26634143-C-T **
7002998-G-T 7134957-G-T **
13859380-AC-A 11738674-AC-A DYZ17 **
2752725-C-A 2884684-C-A 18×A**
26834653-A-G 24688506-A-G P1_g2 **
14025955-CAAAG-C 11905249-CAAAG-C 4×AAAG**
10925923-T-C **
10982391-A-C **
10660779-C-CTACTG **
10757412-T-C **
13859375-G-GA 11738669-G-GA DYZ17 **
28741200-TA-T 26595053-TA-T 8×A**
10975759-T-G **
18990399-C-A 16878519-C-A **
13859405-G-A 11738699-G-A DYZ17 **
10754774-C-G **
10754790-C-G **
10754797-T-C **
18614112-C-A 16502232-C-A **
10932465-G-T **
13855552-A-AGTC 11734846-A-AGTC DYZ17 **
14398414-C-A 12277710-C-A **
18997672-C-A 16885792-C-A **
11025416-C-A **
7011586-C-A 7143545-C-A **
10766679-C-A **
10792808-T-C **
10792814-A-T **
8668171-C-A 8800130-C-A **
10975743-C-CTCCTA **
13859395-G-C 11738689-G-C DYZ17 **
19187440-G-T 17075560-G-T **
13457623-A-T 11301947-A-T **
21624672-A-T 19462786-A-T **
21624674-A-G 19462788-A-G **
22775528-C-A 20613642-C-A **
11035281-C-A **
10794195-A-G **
10976158-C-G **
10994214-C-A **
14196501-C-G 12075795-C-G FT192914 **
21412258-G-T 19250372-G-T **
10924380-T-G **
13936477-C-A 11815771-C-A **
11035294-A-T **
10924296-C-G **
10924323-AT-A **
15734322-T-A 13622442-T-A **
10875746-C-T **
14147857-TA-T 12027151-TA-T **
23047646-C-A 20885760-C-A **
10932437-G-C **
10932458-C-T **
10932459-T-A **
10932511-A-T **
6891764-GT-G 7023723-GT-G 10×T**
10668605-CTGCTG-C **
16229922-A-C 14118042-A-C **
10785542-C-A **
11031653-A-C FT440219 **
16757259-A-G 14645379-A-G **
10916017-G-T **
2665356-C-A 2797315-C-A **
9942167-C-A 10104558-C-A **
20379994-G-T 18218108-G-T P5_Dst **
17752067-C-A 15640187-C-A **
17760542-A-G 15648662-A-G **
15657157-C-A 13545277-C-A **
10629109-T-G **
22903713-C-A 20741827-C-A **
24405096-C-A 22258949-C-A **
17444859-C-A 15332979-C-A **
11025466-G-C **
10931045-C-T **
10922456-T-C **
56839138-G-C **
23831289-C-A 21669403-C-A **
17760536-A-G 15648656-A-G **
10754783-T-G **
17863494-T-C 15751614-T-C **
17863498-A-T 15751618-A-T **
17863502-A-G 15751622-A-G **
16757155-C-A 14645275-C-A **
16018368-C-A 13906488-C-A **
10925960-T-C **
22304936-C-A 20143050-C-A DYZ19 **
10766686-T-C **
26047495-C-A 23901348-C-A P1_Y1 **
13809963-C-A 11689257-C-A DYZ17 **
10873603-C-A **
10662724-C-A **
10744269-T-A **
22102557-C-A 19940671-C-A **
6996957-C-A 7128916-C-A **
10826373-C-A **
10826382-A-G **
10826388-G-C **
10826390-T-C **
10826393-C-T **
14147937-C-A 12027231-C-A **
14147873-C-T 12027167-C-T FGC75696 **
21902219-C-A 19740333-C-A **
16297404-C-A 14185524-C-A **
14147906-G-A 12027200-G-A **
17110249-C-A 14998369-C-A **
10785547-C-A **
9333957-A-G 9496348-A-G **
10925925-T-A **
11005554-T-C **
15047568-C-A 12935659-C-A **
7723748-C-A 7855707-C-A **
11025425-A-C **
18256353-C-A 16144473-C-A **
17052984-C-A 14941104-C-A **
10761040-T-G **
11035351-G-C **
11035357-T-C **
6666377-C-A 6798336-C-A **
14147824-T-C 12027118-T-C **
10668656-C-T **
14147927-G-C 12027221-G-C **
14147928-G-A 12027222-G-A **
14147930-G-T 12027224-G-T **
10873598-C-A **
22656340-C-A 20494454-C-A **
21149581-GGTTTT-G 18987695-GGTTTT-G **
10869939-T-C **
14147886-G-A 12027180-G-A **
15863173-GA-G 13751293-GA-G **
10996608-C-A **
10971148-T-A **
10922401-C-A FT436663 **
11035317-C-A **
56763513-A-G **
18161209-A-T 16049329-A-T **
10922386-C-G **
15512642-TAA-T 13400762-TAA-T 13×A**
24468902-C-A 22322755-C-A **
6775420-C-CAAAA 6907379-C-CAAAA 12×A**
10922446-T-A **
10685764-T-G **
11676310-T-A DYZ17 **
10799513-C-G **
15818515-T-C 13706635-T-C **
13487777-A-T 11332101-A-T **
18725003-C-A 16613123-C-A **
20830355-C-A 18668469-C-A P4_Gap **
10999663-C-A **
14363573-G-T 12242868-G-T **
13488676-G-A 11333000-G-A **
14749137-C-A 12637206-C-A **
23276007-C-A 21114121-C-A **
16581309-C-A 14469429-C-A **
14250154-G-T 12129448-G-T **
21482752-C-A 19320866-C-A **
11011315-C-A **
8704199-AT-A 8836158-AT-A **
14255078-C-A 12134372-C-A **
3347503-C-A 3479462-C-A **
16936042-C-A 14824162-C-A **
56858989-C-A **
16465762-A-T 14353882-A-T **
10817506-ATCCAT-A **
10751090-A-G **
15168705-C-A 13056791-C-A **
16757251-T-A 14645371-T-A **
28492330-C-A 26346183-C-A **
10892596-T-TTCATG **
10751101-T-A **
4540363-C-A 4672322-C-A **
10869946-C-A **
56858593-A-C **
15605481-C-A 13493601-C-A **
18942243-C-A 16830363-C-A **
15660930-C-A 13549050-C-A **
13323369-C-A 11167693-C-A **
19066233-C-A 16954353-C-A **
13696274-T-G 11540598-T-G DYZ17 **
16052065-C-A 13940185-C-A **
14298735-C-A 12178029-C-A **
21784235-G-GT **
7234332-C-A 7366291-C-A **
8987553-T-C 9149944-T-C **
11035337-A-T **
10925132-C-A **
21983028-C-A 19821142-C-A **
10774768-C-A **
2842953-C-A 2974912-C-A **
21425145-C-A 19263259-C-A **
10796455-C-A **
7996869-C-A 8128828-C-A **
13292082-T-TC 11136406-T-TC 10×C**
10932485-C-G **
15818531-A-G 13706651-A-G **
17584305-A-G 15472425-A-G **
22950300-C-A 20788414-C-A **
14147949-C-G 12027243-C-G **
18195877-C-A 16083997-C-A **
10935632-C-A **
10952222-T-C **
10661731-C-A **
10629047-C-A **
15412271-T-C 13300391-T-C **
15412273-G-T 13300393-G-T **
2701827-C-A 2833786-C-A **
2752724-T-A 2884683-T-A **
2852710-C-A 2984669-C-A **
3010636-G-T 3142595-G-T **
3206959-A-C 3338918-A-C **
3731941-C-A 3863900-C-A **
3877005-T-A 4008964-T-A FGC1696FGC1696 **
3999176-G-T 4131135-G-T **
4067096-G-T 4199055-G-T **
4123764-G-A 4255723-G-A **
4162005-C-A 4293964-C-A **
4235788-C-A 4367747-C-A **
4352633-C-A 4484592-C-A **
4439624-T-C 4571583-T-C **
5350329-C-A 5482288-C-A **
5942840-T-A 6074799-T-A **
6185699-G-T 6317658-G-T IR3_Dst **
6185714-C-A 6317673-C-A IR3_Dst **
6185722-A-C 6317681-A-C IR3_Dst **
6185724-C-G 6317683-C-G IR3_Dst **
6185754-A-T 6317713-A-T IR3_Dst **
6293357-T-G 6425316-T-G IR3_Dst **
6353996-T-G 6485955-T-G **
6437005-T-G 6568964-T-G **
6492409-A-G 6624368-A-G **
6505482-C-A 6637441-C-A **
6538380-G-T 6670339-G-T **
6688544-C-A 6820503-C-A **
6888461-A-AAC 7020420-A-AAC **
7040335-C-A 7172294-C-A **
7160934-C-T 7292893-C-T **
7195307-C-CAAA 7327266-C-CAAA 16×A**
7238775-C-A 7370734-C-A **
7313166-T-G 7445125-T-G **
7412893-A-G 7544852-A-G **
7635961-C-T 7767920-C-T **
7864369-C-A 7996328-C-A **
8389563-T-G 8521522-T-G **
8389567-T-G 8521526-T-G **
8912944-G-T 9044903-G-T **
9194061-T-G 9356452-T-G **
9194066-A-C 9356457-A-C **
9441352-G-T 9603743-G-T **
9483319-G-T 9645710-G-T **
9493569-G-A 9655960-G-A **
9577160-T-A 9739551-T-A IR3_Prx **
9669779-C-A 9832170-C-A IR3_Prx **
9826280-C-A 9988671-C-A **
9926701-T-G 10089092-T-G **
9996018-C-A 10158409-C-A **
10629028-A-T **
10629033-A-G **
10629040-T-G **
10629095-T-C **
10667717-CT-C **
10686316-C-A **
10744521-T-A **
10751082-T-C **
10751097-T-TCTAGC **
10755222-C-G **
10766688-A-T **
10766691-CCATTT-C **
10774757-T-C **
10780871-A-C **
10791141-C-T **
10794810-A-C **
10804726-C-A **
10816086-T-C **
10834917-A-G **
10843322-C-A **
10846891-TC-T **
10846898-C-CA **
10903553-T-G **
10925909-T-A **
10925913-T-C **
10934940-T-G **
10952928-T-G **
10952944-A-C **
10952950-C-T **
10955318-T-A **
10955329-C-A **
10955331-T-A **
10958488-T-G **
10971059-C-A **
10982562-A-G **
10982574-T-G **
10982575-C-G **
10982611-C-A **
10982627-A-C **
10982630-C-T **
10985337-A-G **
10986496-C-CTCCAT **
10990383-T-G **
11003404-G-A **
11018911-C-A **
11026091-T-A **
11035354-T-G **
11035361-C-A **
11035362-C-T **
11035374-C-T **
13257679-C-A 11102003-C-A **
13637761-G-T 11482085-G-T **
13642332-T-C 11486656-T-C **
13696288-A-G 11540612-A-G DYZ17 **
13696293-GGACCA-G 11540617-GGACCA-G DYZ17 **
13708969-G-T 11553293-G-T DYZ17 **
13896344-C-A 11775638-C-A **
13974169-G-T 11853463-G-T **
14067812-T-C 11947106-T-C **
14071623-C-A 11950917-C-A **
14147839-C-A 12027133-C-A **
14147891-T-C 12027185-T-C **
14147936-C-G 12027230-C-G **
14328772-T-C 12208066-T-C **
14369220-C-A 12248516-C-A **
14424891-G-T 12304166-G-T **
14461389-A-C 12340662-A-C **
14532115-C-T 12420316-C-T **
14635760-T-G 12523829-T-G **
14671717-G-T 12559783-G-T **
14716745-A-G 12604813-A-G **
14722508-A-T 12610576-A-T **
14722521-T-G 12610589-T-G **
14802820-TTACATGGCAGG-T 12690891-TTACATGGCAGG-T **
15235534-T-G 13123620-T-G **
15309808-C-CA 13197913-C-CA **
15323713-G-T 13211831-G-T **
15342434-G-A 13230553-G-A **
15388361-G-A 13276481-G-A FT180325 **
15412272-A-G 13300392-A-G **
15475919-C-A 13364039-C-A **
15546165-C-T 13434285-C-T **
15689065-C-T 13577185-C-T **
15816557-C-T 13704677-C-T **
15969694-C-A 13857814-C-A **
16229915-T-C 14118035-T-C **
16653682-G-T 14541802-G-T **
16922267-G-A 14810387-G-A **
16936101-G-T 14824221-G-T FT369122 **
17086857-C-A 14974977-C-A **
17224225-C-A 15112345-C-A **
17282417-C-A 15170537-C-A **
17434142-C-A 15322262-C-A **
17441331-C-A 15329451-C-A **
17557834-C-A 15445954-C-A **
17584304-A-G 15472424-A-G **
17584319-T-TTTTTA 15472439-T-TTTTTA **
17811971-AT-A 15700091-AT-A **
17863501-C-T 15751621-C-T **
17863507-C-G 15751627-C-G **
18082859-A-T 15970979-A-T **
18262577-A-G 16150697-A-G **
18346456-T-C 16234576-T-C P6_Prx **
18401938-T-C 16290058-T-C P6_Gap **
18405936-C-A 16294056-C-A P6_Gap **
18406205-T-C 16294325-T-C P6_Gap **
18534204-A-ACG 16422324-A-ACG P6_Dst **
18554469-T-G 16442589-T-G **
18554471-T-G 16442591-T-G **
18585808-A-C 16473928-A-C **
18636613-T-TG 16524733-T-TG **
18646706-C-A 16534826-C-A **
18854040-A-G 16742160-A-G **
19087897-T-C 16976017-T-C **
19183992-G-C 17072112-G-C **
19184000-T-G 17072120-T-G **
19183995-ATTTTTT-A 17072115-ATTTTTT-A 12×T**
19300752-T-C 17188872-T-C **
19351990-C-A 17240110-C-A **
19373803-G-A 17261923-G-A **
19415291-C-A 17303411-C-A **
19467028-C-A 17355148-C-A **
19539476-C-T 17427596-C-T **
19775555-G-C 17663675-G-C P5_Prx **
19775560-T-A 17663680-T-A P5_Prx **
19775596-T-A 17663716-T-A P5_Prx **
19775613-T-A 17663733-T-A P5_Prx **
20522910-C-A 18361024-C-A P5_Dst **
20522925-T-G 18361039-T-G P5_Dst **
21082296-AAAAG-A 18920410-AAAAG-A **
21104439-A-AC 18942553-A-AC **
21153497-G-T 18991611-G-T **
21183724-T-A 19021838-T-A **
21266671-C-A 19104785-C-A **
21287029-C-A 19125143-C-A **
21298002-C-A 19136116-C-A **
21329420-C-A 19167534-C-A **
21346267-T-G 19184381-T-G **
21514162-C-A 19352276-C-A **
21614635-G-A 19452749-G-A **
21617557-C-A 19455671-C-A **
21653484-C-A 19491598-C-A **
21654119-A-T 19492233-A-T **
21700451-T-G 19538565-T-G **
21785988-CA-C 19624102-CA-C **
22125578-C-A 19963692-C-A **
22146249-G-T 19984363-G-T **
22170975-A-G 20009089-A-G **
22199499-C-A 20037613-C-A **
22304931-C-A 20143045-C-A DYZ19 **
22304949-G-T 20143063-G-T DYZ19 **
22304955-C-A 20143069-C-A DYZ19 **
22304972-C-A 20143086-C-A DYZ19 **
22304991-G-T 20143105-G-T DYZ19 **
22577942-C-A 20416056-C-A **
22622981-C-T 20461095-C-T **
22804186-C-G 20642300-C-G **
22950297-T-A 20788411-T-A **
22996515-C-CT 20834629-C-CT **
23044176-G-A 20882290-G-A **
23048159-C-A 20886273-C-A **
23189985-G-T 21028099-G-T **
23434382-C-A 21272496-C-A **
23446950-C-A 21285064-C-A **
23493591-G-T 21331705-G-T **
23537037-A-G 21375151-A-G **
23610149-C-A 21448263-C-A **
24267361-G-A 22121214-G-A P3_b1 **
24459402-A-T 22313255-A-T ****
24511295-C-A 22365148-C-A **
24633192-G-T 22487045-G-T P3_t2 **
24729754-T-A 22583607-T-A P3_b2 **
26325244-G-A 24179097-G-A FT59718 P1_Y1 ****
27246132-A-C 25099985-A-C P1_g3 **
27791897-C-A 25645750-C-A P1_Y2 **
27822271-C-A 25676124-C-A P1_Y2 **
28479825-T-A 26333678-T-A **
28496480-C-A 26350333-C-A **
28778938-G-A 26632791-G-A **
28798379-T-G 26652232-T-G **
56822474-T-C **
56834976-C-T **
56841900-C-A **
56842339-A-T **
56848788-A-T **
22445777-C-A 20283891-C-A DYZ19 **
4428154-A-G 4560113-A-G **
5088049-T-C 5220008-T-C **
5303965-T-G 5435924-T-G **
5303995-A-G 5435954-A-G **
9654428-GAGAAGGGAGGGAGGGA-G 9816819-GAGAAGGGAGGGAGGGA-G IR3_Prx **
9766409-T-C 9928800-T-C **
14301962-A-G 12181256-A-G **
21351804-C-A 19189918-C-A **
25530004-C-A 23383857-C-A P1_gr1 **
25934593-T-G 23788446-T-G BY196748 P1_Y1 **
18679925-CAAAAAAA-C 16568045-CAAAAAAA-C 25×A***
18837739-A-AT 16725859-A-AT 10×T***
15032032-C-A 12920120-C-A ***
15358761-GAA-G 13246880-GAAA-G 26×A***
10892579-A-C ***
10682489-T-A ***
7608540-TA-T,TAA 7740499-TA-T,TAA 17×A***
21927914-CT-C 19766028-CT-C 10×T***
2810366-ATTTTTTTT-A 2942325-ATTTTTTTT-A 23×T***
18959214-CAAAA-C,CAA 16847334-CAAAA-C,CAA 27×A***
16298455-G-A 14186575-G-A ***
16599739-T-TA 14487859-T-TA 10×A***
13488762-C-A 11333086-C-A ***
22783105-C-A 20621219-C-A ***
18931198-C-A 16819318-C-A ***
21172514-G-GA 19010628-G-GA 9×A***
10989154-C-A,T ***
13228152-TG-T 11072476-TG-T ***
15341872-C-T 13229991-C-T FT30002 ***
10693153-C-A ***
18606854-G-GTT 16494974-G-GTT 13×T***
19410889-C-A 17299009-C-A ***
14969276-C-A 12857351-C-A ***
4235941-C-A 4367900-C-A ***
6385540-TA-T 6517499-TA-T 8×A***
2841104-CTTTT-C,CTTT 2973063-CTTTT-C,CTTT 17×T***
2843323-C-A 2975282-C-A ***
2864176-C-A 2996135-C-A ***
4243184-T-A 4375143-T-A ***
6979829-C-A 7111788-C-A ***
7258503-C-A 7390462-C-A ***
7311179-A-G 7443138-A-G ***
7534761-T-C 7666720-T-C ***
7662109-C-A 7794068-C-A ***
7986839-T-C 8118798-T-C ***
8024938-C-T 8156897-C-T FTA30354 ***
8151761-C-A 8283720-C-A ***
8272815-T-A 8404774-T-A ***
8431283-C-A 8563242-C-A ***
8721113-T-C 8853072-T-C ***
8832242-C-T 8964201-C-T ***
8878964-T-C 9010923-T-C ***
9396413-C-A 9558804-C-A ***
9776395-C-A 9938786-C-A ***
9895535-G-T 10057926-G-T ***
9908342-G-A 10070733-G-A ***
10755246-C-A ***
10799529-T-C ***
10934867-C-G ***
10948116-C-A ***
13228152-T-A 11072476-T-A ***
13361214-T-C 11205538-T-C ***
11655191-G-A DYZ17 ***
14012927-G-T 11892221-G-T ***
14470835-G-T 12350104-G-T ***
14516669-C-A 12404870-C-A ***
15200300-C-A 13088386-C-A ***
15281220-C-A 13169319-C-A ***
15478728-C-A 13366848-C-A ***
15515314-C-A 13403434-C-A ***
15761383-G-A 13649503-G-A ***
15951426-G-A 13839546-G-A ***
17302875-G-GA 15190995-G-GA 9×A***
17865773-T-C 15753893-T-C ***
18770109-C-A 16658229-C-A ***
18978659-T-C 16866779-T-C ***
19391087-CTT-C 17279207-CTT-C 11×T***
21603219-C-A 19441333-C-A ***
21885383-T-C 19723497-T-C ***
21948695-C-A 19786809-C-A ***
22093706-C-A 19931820-C-A ***
22654631-C-A 20492745-C-A ***
23418940-C-A 21257054-C-A ***
23577937-C-A 21416051-C-A ***
23617707-G-T 21455821-G-T ***
24439617-G-T 22293470-G-T ***
24492038-AT-A 22345891-AT-A 9×T***
27829131-C-A 25682984-C-A P1_Y2 ***
28441661-C-A 26295514-C-A P1_gr2 ***
11036222-T-A ***
13468472-C-A,G 11312796-C-A,G ***
3266316-T-C 3398275-T-C ***
5162084-T-C 5294043-T-C ***
5493439-T-C 5625398-T-C ***
8379143-CCTTCTTT-C,CCTTTCTTT 8511102-CCTTCTTT-C,CCTTTCTTT ***
14123505-C-T 12002799-C-T ***
14135591-T-C 12014885-T-C ***
16687923-T-C 14576043-T-C ***
16999811-T-C 14887931-T-C ***
17297387-T-C 15185507-T-C ***
18115188-TCTATCTATGTATCTATCTATGCATCTGTCTATCTATCATCTA-T,TCTATCTATGTATCTATCTATCTATCTATCAT 16003308-TCTATCTATGTATCTATCTATGCATCTGTCTATCTATCATCTA-T,TCTATCTATGTATCTATCTATCTATCTATCAT ***
21170319-GTT-G,GTTT 19008433-GTT-G,GTTT 14×T***
21417207-G-A 19255321-G-A ***
23019392-A-G 20857506-A-G ***
23315713-CTT-C,CTTT 21153827-CTT-C,CTTT 20×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.