O'Donnell

BigY2: B292198
MDKA Birth: Ireland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > Z21065 > A195 > A761 > A88 > BY2878 > A89 > BY15518

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B292198
28811080-A-T 26664933-A-T A*
13449736-T-C 11294060-T-C A*
10986893-A-ACTC A*
19899336-A-G 17787456-A-G P5_Prx A*
28793592-A-G 26647445-A-G A*
19816151-T-C 17704271-T-C P5_Prx A*
13448680-A-G 11293004-A-G A*
24309593-A-G 22163446-A-G P3_t1 A*
10986874-T-G A*
28805303-G-A 26659156-G-A A*
28805299-G-T 26659152-G-T A*
28792226-A-G 26646079-A-G A*
13687318-A-C 11531642-A-C A*
28805283-C-T 26659136-C-T A*
28792235-C-G 26646088-C-G A*
13451251-C-G 11295575-C-G A*
28815523-A-G 26669376-A-G A*
28790851-A-C 26644704-A-C A16926 A*
28793523-G-A 26647376-G-A A*
28793519-T-A 26647372-T-A A*
28817947-G-T 26671800-G-T A*
28805205-A-T 26659058-A-T A*
17447212-G-T 15335332-G-T BY162349 YY+
22467402-A-T 20305516-A-T DYZ19 +
7458372-G-A 7590331-G-A BY161181 IR1_L +
17447211-G-C 15335331-G-C BY162348 YY+
7757918-T-C 7889877-T-C BY161234 YY+
16818483-G-C 14706603-G-C BY162211 YY+
2833119-G-A 2965078-G-A BY160948 YY+
14562492-C-T 12450692-C-T BY161805 YY+
14049929-T-C 11929223-T-C BY161702 YY+
16602234-T-A 14490354-T-A A1457 FGC76545 YY+
22804473-A-C 20642587-A-C BY163143 YY+
8509219-AT-A 8641178-AT-A +
22803200-A-G 20641314-A-G BY163142 YY+
19680-T-A +
28764632-G-A 26618485-G-A BY227160 +
22288875-T-A 20126989-T-A DYZ19 *
13450508-CCACTCCACTCCACTT-C,CCACTC 11294832-CCACTCCACTCCACTT-C,CCACTC *
22316041-G-A 20154155-G-A DYZ19 *
22432503-G-A 20270617-G-A DYZ19 *
9564466-TG-T 9726857-TG-T IR3_Prx **
9537699-GTTGTCTGTGT-G 9700090-GTTGTCTGTGT-G IR3_Prx **
9379024-A-G 9541415-A-G **
8673849-C-A 8805808-C-A **
28529730-C-A 26383583-C-A **
8270002-C-A 8401961-C-A **
8140452-C-A 8272411-C-A **
22865256-C-A 20703370-C-A **
28531415-G-A 26385268-G-A **
7717665-T-C 7849624-T-C **
28596698-G-GTTT 26450551-G-GTTT 24×T**
7149820-G-T 7281779-G-T **
7048597-C-A 7180556-C-A **
6720412-T-C 6852371-T-C **
6631776-C-A 6763735-C-A **
9564504-G-T 9726895-G-T IR3_Prx **
10789066-A-G **
9654445-A-C 9816836-A-C IR3_Prx **
10847624-C-A **
10930384-C-T **
10911129-A-G **
10911126-C-G **
10869974-T-TTCAAA **
10869957-C-A **
10868148-C-T **
10843430-C-A **
10023728-T-A 10186119-T-A **
10824349-A-C **
10817419-C-A **
10811675-C-A **
10808717-G-GTTCCC **
28498276-A-T 26352129-A-T **
10796851-C-A **
6522647-C-A 6654606-C-A FT83318 **
6614564-C-A 6746523-C-A **
5745526-C-A 5877485-C-A **
5829235-C-T 5961194-C-T FT49385 **
2744728-T-C 2876687-T-C **
3633075-T-C 3765034-T-C **
3452544-A-T 3584503-A-T **
3123643-C-A 3255602-C-A **
3112235-C-A 3244194-C-A **
2921861-C-A 3053820-C-A **
28685934-C-A 26539787-C-A **
8181175-ATTTTTTTTTTTTTT-A 8313134-ATTTTTTTTTTTTTT-A 38×T**
3778381-G-T 3910340-G-T **
18270364-G-A 16158484-G-A **
28800833-T-G 26654686-T-G **
28818063-A-T 26671916-A-T **
18247237-C-A 16135357-C-A **
16464628-C-A 14352748-C-A **
56843930-G-A **
28655040-C-A 26508893-C-A **
28608336-T-C 26462189-T-C **
5755298-C-A 5887257-C-A **
5189575-C-A 5321534-C-A **
10941083-C-T **
5738948-C-A 5870907-C-A FT55599 **
5696748-C-A 5828707-C-A **
5554066-C-A 5686025-C-A **
5480908-C-CTT 5612867-C-CTT 16×T**
5218476-G-T 5350435-G-T **
5138463-G-A 5270422-G-A A13315FGC75993 **
3851612-T-G 3983571-T-G **
4990512-A-G 5122471-A-G **
4957631-C-A 5089590-C-A **
4587460-C-A 4719419-C-A **
4470865-A-G 4602824-A-G **
4155632-G-T 4287591-G-T **
4072020-G-T 4203979-G-T 13×GA**
3851633-A-C 3983592-A-C **
10939215-A-T **
10954153-TTGCAC-T **
10943760-C-A **
17605021-C-A 15493141-C-A **
18011903-ATAATATAGAGCCAT-A 15900023-ATAATATAGAGCCAT-A P7_Dst **
18011878-C-A 15899998-C-A P7_Dst **
17724420-G-A 15612540-G-A **
17724414-C-T 15612534-C-T **
24270310-G-T 22124163-G-T P3_b1 **
17724410-T-G 15612530-T-G **
24432785-C-T 22286638-C-T **
18790059-TG-T 16678179-TG-T **
24475218-C-T 22329071-C-T **
17381376-G-A 15269496-G-A **
17206446-C-A 15094566-C-A **
17020575-C-A 14908695-C-A **
24627794-C-CG 22481647-C-CG P3_t2 **
16722711-G-T 14610831-G-T **
16006101-G-A 13894221-G-A **
18634741-C-A 16522861-C-A **
19436995-G-T 17325115-G-T **
15749549-GTA-G 13637669-GTA-G **
22205427-C-A 20043541-C-A **
22880806-C-A 20718920-C-A **
23127414-C-G 20965528-C-G 24×A**
22775178-C-A 20613292-C-A **
22537319-G-T 20375433-G-T **
23206815-G-A 21044929-G-A **
22342009-A-T 20180123-A-T DYZ19 **
21771532-C-A 19609646-C-A **
19609596-G-T 17497716-G-T P5_Prx **
20637637-TG-T 18475751-TG-T P4_Prx **
20269691-G-T 18107805-G-T P5_Dst **
20269630-A-T 18107744-A-T P5_Dst **
24023682-A-C 21877535-A-C **
24115149-G-T 21969002-G-T P3_b1 **
24270300-C-A 22124153-C-A P3_b1 **
19682935-C-A 17571055-C-A P5_Prx **
15835265-GA-G 13723385-GA-G 9×A**
15686884-C-A 13575004-C-A **
10951345-C-A **
11007078-C-A **
26352501-C-A 24206354-C-A P1_Y1 **
13468094-G-T 11312418-G-T **
13461732-C-T 11306056-C-T **
11037816-C-T **
11007148-C-T **
11007146-T-A **
11006956-C-A **
11647355-A-G **
10996704-A-G **
10988048-C-A **
10983793-C-A **
10980550-T-C **
10976459-C-A **
10974799-A-C **
22809006-C-A 20647120-C-A **
13696384-G-T 11540708-G-T **
11647417-A-T **
15620456-A-G 13508576-A-G **
14588940-A-C 12477140-A-C **
15490571-C-A 13378691-C-A **
15411339-G-T 13299459-G-T **
15297068-G-C 13185167-G-C **
15041070-TGGG-T 12929160-TGGG-T **
14658327-T-C 12546392-T-C **
14605747-A-G 12493949-A-G **
14566552-C-T 12454752-C-T **
26084974-G-T 23938827-G-T P1_Y1 **
25957952-T-C 23811805-T-C P1_Y1 **
14444899-A-C 12324172-A-C **
14351229-T-G 12230524-T-G **
14225758-C-A 12105052-C-A FT138337 **
14075866-T-G 11955160-T-G **
26078847-C-CTCAT 23932700-C-CTCAT P1_Y1 10×TTAT**
14031720-T-A 11911014-T-A **
11654728-G-T **
28482687-T-C 26336540-T-C CTS12113 **
10892470-CTCCTT-C **
16102015-T-TTG 13990135-T-TTG P8_Prx **
15497972-ATTTT-A 13386092-ATTTT-A 26×T**
10979375-T-G **
10979363-C-CATTAT **
10979347-C-G **
10895863-T-C **
10945723-T-A **
9034619-C-A 9197010-C-A **
14566526-G-A 12454726-G-A **
26085579-C-A 23939432-C-A P1_Y1 **
16561330-C-A 14449450-C-A **
10912904-A-G **
10912892-A-C **
10912888-G-C **
10912878-T-A **
10912866-A-G **
10912824-G-C **
9403097-C-A 9565488-C-A Y88924 **
10899923-A-T **
10656863-A-C **
3955529-C-A 4087488-C-A **
7535899-C-T 7667858-C-T **
24509389-C-A 22363242-C-A **
10997728-C-A **
10771207-AT-A **
15424272-CAA-C 13312392-CAA-C 11×A**
15774956-G-T 13663076-G-T **
16091236-C-A 13979356-C-A **
14266996-C-A 12146290-C-A **
10892497-T-A **
7724519-G-GA 7856478-G-GA 9×A**
16305904-G-A 14194024-G-A **
10875756-C-T **
10875717-TCTCAA-T **
14316230-C-A 12195524-C-A **
13257481-A-G 11101805-A-G **
10843737-C-T **
17770558-C-A 15658678-C-A **
28609589-C-A 26463442-C-A **
9063614-C-A 9226005-C-A **
16344795-T-C 14232915-T-C **
28796813-A-G 26650666-A-G **
10972907-T-C **
10974804-G-A **
6044751-G-T 6176710-G-T **
10062555-GC-A 10224946-GC-A **
10062586-G-A 10224977-G-A **
10062512-T-A 10224903-T-A **
6756908-CA-C 6888867-CA-C 26×A**
10983618-C-T **
13460973-A-G 11305297-A-G **
10062539-A-T 10224930-A-T **
14551563-C-A 12439764-C-A Y131723 **
59002465-CTTCTT-C 56856318-CTTCTT-C **
58998467-T-C 56852320-T-C **
10062563-G-C 10224954-G-C **
18982547-CAA-C 16870667-CAA-C 39×A**
10656853-C-A **
10858447-C-T **
11025491-T-C **
10949335-C-T **
10892485-T-C **
11003378-C-T **
10751631-T-C **
24447029-T-TA 22300882-T-TA 10×A**
13936073-TA-T 11815367-TA-T 9×A**
18959201-C-A 16847321-C-A **
10663049-C-A **
10922194-A-T **
10858475-T-C **
10869979-T-C **
10893824-TCCAC-T **
20974879-CA-C 18812993-CA-C P4_Dst **
11036110-C-G **
11036102-C-A **
24278333-A-AGGG 22132186-A-AGGG P3_b1 **
14986321-G-A 12874389-G-A **
15940211-T-G 13828331-T-G **
17093614-C-A 14981734-C-A **
27447462-GT-G 25301315-GT-G P1_Y2 **
26355360-C-A 24209213-C-A P1_Y1 **
7076155-C-A 7208114-C-A **
5449475-G-T 5581434-G-T **
10922253-C-A **
15940205-G-A 13828325-G-A **
19832329-A-AC 17720449-A-AC P5_Prx **
8673951-C-A 8805910-C-A **
20570286-C-A 18408400-C-A P5_Dst **
3807380-C-CT 3939339-C-CT 9×T**
7535887-CAA-C 7667846-CAA-C **
10892495-C-T **
10786433-T-A **
10919388-G-T **
11003510-G-C **
10974785-C-T **
10940841-CATTGT-C **
22518227-C-A 20356341-C-A **
3877000-C-A 4008959-C-A **
13999987-G-T 11879281-G-T **
7349217-C-A 7481176-C-A **
10868116-T-C **
6226079-C-A 6358038-C-A IR3_Dst **
13496284-G-T 11340608-G-T **
10969005-C-G **
10748065-C-G **
15397119-G-T 13285239-G-T **
10933385-C-A **
10793675-C-A **
14539581-T-C 12427782-T-C **
14539574-G-A 12427775-G-A **
10869964-T-C **
18184577-G-T 16072697-G-T **
10976443-A-C **
11020183-C-T **
10940810-G-A **
10930381-C-T **
16575065-C-A 14463185-C-A **
10656836-T-TC **
11020153-T-G **
2784172-C-A 2916131-C-A **
6130181-C-A 6262140-C-A **
16427325-C-A 14315445-C-A **
19296975-C-A 17185095-C-A **
10940838-C-T **
19146524-C-A 17034644-C-A **
10868114-C-A **
8167168-G-T 8299127-G-T **
11020180-G-T **
19600428-A-T 17488548-A-T P5_Prx **
16177253-C-A 14065373-C-A **
17561386-C-A 15449506-C-A **
10665444-C-A **
16047925-C-A 13936045-C-A **
3091943-C-A 3223902-C-A **
22048540-C-A 19886654-C-A **
10907776-T-A ***
28812502-G-A 26666355-G-A ***
10893831-T-C ***
10893835-A-G ***
56840513-T-A ***
10986837-C-A ***
15157858-C-A 13045945-C-A ***
56837251-T-C ***
8600007-TTC-T 8731966-TTC-T ***
10747019-A-C ***
4071973-G-T 4203932-G-T ***
22857803-C-A 20695917-C-A ***
7974255-C-A 8106214-C-A ***
56844378-G-T ***
10828683-T-A,C ***
59006618-A-G 56860471-A-G ***
7222940-C-A 7354899-C-A ***
14847004-CAAAAA-C 12735070-CAAAAA-C 20×A***
17054898-CAT-C 14943018-CAT-C ***
23623278-C-T 21461392-C-T ***
5412253-C-A 5544212-C-A ***
11004534-G-T ***
8398840-CAAAA-C,CAAA 8530799-CAAAA-C,CAAA 17×A***
11034481-C-A ***
21950218-C-A 19788332-C-A ***
10875797-A-G ***
10875770-C-T ***
11651956-A-G ***
10875800-C-A ***
11018302-C-A ***
10847469-T-C ***
11033312-C-A ***
10683163-C-T ***
11025352-C-A ***
11019780-C-A ***
15967503-CTTTT-C 13855623-CTTTT-C 14×T***
13839756-TAATGGAATGG-T,TAATGG 11719050-TAATGGAATGG-T,TAATGG 11×AATGG***
10786440-G-C ***
10911660-G-A ***
10973107-C-A ***
14785684-C-A 12673754-C-A ***
10755496-T-C ***
10654685-T-C ***
10875757-A-T ***
10786434-T-C ***
10875775-C-T ***
4172271-C-A 4304230-C-A ***
10987803-C-T ***
56734816-A-C ***
18959298-TAAA-T,TAA 16847418-TAAA-T,TAA 23×A***
10956673-C-A ***
24485675-C-CT,CTT 22339528-C-CT,CTT 15×T***
14539225-C-A 12427426-C-A ***
10653963-C-A ***
16424723-G-T 14312843-G-T ***
8816385-A-G 8948344-A-G ***
9111008-C-A ***
10875780-C-T ***
15684243-A-G 13572363-A-G ***
21717859-AAAAT-A 19555973-AAAAT-A 5×AAAT***
10973656-C-A ***
10652890-C-T ***
7256093-GAA-G,GAAA 7388052-GAA-G,GAAA 18×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B292198974635678976787771056
Used in age calculations974635678976787771056
Counts of SNPs1010
Variant counts last updated 2019-11-29 04:19:18.


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