Tree Position

R-U106/S21 > Z2265 > Z381/S263 > S264/Z156 > Z305 > Z307 > S265/Z304 > FGC29253 > S1911 > S1894 > FGC14818 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
42948
24263872-C-T 22117725-C-T P3_b1 A*
28816692-G-C 26670545-G-C A*
20717501-G-T 18555615-G-T P4_Prx A*
26407641-C-A 24261494-C-A P1_Y1 A*
20630892-C-T 18469006-C-T P4_Prx A*
25873087-T-C 23726940-T-C P1_Y1 A*
18370199-G-A 16258319-G-A P6_Prx A*
18287072-A-G 16175192-A-G P6_Prx A*
17924540-T-C 15812660-T-C BY154508 YY+
21749349-G-T 19587463-G-T BY155109 YY+
19452880-GC-G 17341000-GC-G +
19349163-G-A 17237283-G-A BY154878 YY+
18903966-G-A 16792086-G-A BY154750 YY+
18645465-T-C 16533585-T-C BY154682 YY+
16349832-T-G 14237952-T-G BY154097 YY+
16590016-C-T 14478136-C-T BY154159 YY+
22239467-G-T 20077581-G-T BY213951 DYZ19 +
16237394-G-A 14125514-G-A BY154062 YY+
15725355-G-A 13613475-G-A BY153958 YY+
14727654-C-T 12615722-C-T BY153707 YY+
2732976-T-A 2864935-T-A BY152305 YY+
14043257-G-C 11922551-G-C BY153514 YY+
7036167-A-C 7168126-A-C BY152519 YY+
7884956-C-T 8016915-C-T BY152741 YY+
8067772-C-T 8199731-C-T BY152789 YY+
21838904-A-C 19677018-A-C BY155145 Y+
16860441-G-A 14748561-G-A YY+
23427581-G-C 21265695-G-C BY155606 YY+
22471000-T-A 20309114-T-A BY222494 DYZ19 +
23070260-C-T 20908374-C-T BY155502 YY+
23561350-G-A 21399464-G-A BY155644 YY+
23141758-C-T 20979872-C-T Y17059Y58793 YY+
22858247-A-G 20696361-A-G BY155446 YY+
23315719-T-C 21153833-T-C YY*
23315718-T-TC 21153832-T-TC *
14035986-C-A 11915280-C-A **
11004675-C-A **
10956507-T-C **
10977504-C-A **
10988851-ACT-A **
14076115-C-A 11955409-C-A **
11000235-C-A **
11004391-A-T **
13460414-C-A 11304738-C-A **
26089960-A-T 23943813-A-T P1_Y1 **
26014733-A-T 23868586-A-T P1_Y1 **
13483271-G-T 11327595-G-T **
10947251-G-T **
13483284-A-T 11327608-A-T **
13594293-C-A 11438617-C-A **
13693107-T-C 11537431-T-C **
13856315-AT-A 11735609-AT-A **
13966818-C-A 11846112-C-A **
14025918-G-T 11905212-G-T **
22244542-C-T 20082656-C-T DYZ19 **
10835541-C-A **
10888266-C-A **
10682926-T-G **
10632575-C-A **
28546897-C-A 26400750-C-A **
10653445-T-G **
10653509-T-G **
3436452-A-G 3568411-A-G L799 **
10664785-C-G **
10677780-TCTGAA-T **
10677800-C-T **
10745653-C-A **
10888242-C-G **
10746662-C-A **
10757331-A-T **
10774176-AT-A **
10783108-C-A **
26153761-C-T 24007614-C-T P1_Y1 **
10802060-C-A **
10802067-A-ACTAAG **
14270468-G-T 12149762-G-T **
14142435-C-A 12021729-C-A **
14685801-A-C 12573867-A-C **
14383740-T-C 12263036-T-C **
19755996-T-C 17644116-T-C P5_Prx **
18539351-C-T 16427471-C-T **
18769958-T-A 16658078-T-A **
22949922-C-A 20788036-C-A **
19226063-C-A 17114183-C-A **
19304647-C-T 17192767-C-T **
22869759-G-A 20707873-G-A **
19412516-C-A 17300636-C-A **
19558098-C-A 17446218-C-A **
20614921-T-C 18453035-T-C P4_Prx **
18138098-A-T 16026218-A-T **
22834644-C-A 20672758-C-A **
22690862-C-A 20528976-C-A **
21371571-C-A 19209685-C-A **
21617630-T-G 19455744-T-G **
22447019-A-T 20285133-A-T DYZ19 **
22041510-C-A 19879624-C-A **
22274306-T-C 20112420-T-C DYZ19 **
22244506-A-T 20082620-A-T DYZ19 **
18186718-G-T 16074838-G-T **
17915871-A-T 15803991-A-T **
14385101-G-A 12264397-G-A **
16094739-T-C 13982859-T-C **
14512561-A-G 12400766-A-G **
14602674-C-T 12490876-C-T **
22244528-G-A 20082642-G-A DYZ19 **
24465984-C-T 22319837-C-T **
24407388-G-T 22261241-G-T **
15866744-G-A 13754864-G-A **
15927672-A-T 13815792-A-T **
16028897-C-A 13917017-C-A **
21751553-G-A **
17675526-T-C 15563646-T-C **
21751077-G-T **
16422799-T-C 14310919-T-C **
16703595-G-T 14591715-G-T **
16703773-G-T 14591893-G-T **
9870150-C-A 10032541-C-A **
17004574-C-T 14892694-C-T **
17191650-C-A 15079770-C-A **
17420972-C-A 15309092-C-A **
17580928-TA-T 15469048-TA-T **
10632557-G-C **
10662381-C-A **
9471717-G-T 9634108-G-T **
11004439-C-CGT **
13989113-C-A 11868407-C-A **
16640359-C-A 14528479-C-A **
15001334-C-A 12889419-C-A **
10888288-T-A **
10982373-C-A **
10911700-G-A **
10888269-G-T **
13620734-C-A 11465058-C-A **
5888206-A-C 6020165-A-C **
15012733-C-A 12900821-C-A **
11004440-CAT-C **
14561711-C-A 12449912-C-A **
13468173-A-C 11312497-A-C **
10796699-T-A **
15249044-C-T 13137130-C-T **
10834798-G-T **
8806985-T-G 8938944-T-G **
10888229-C-T **
17342954-C-A 15231074-C-A **
15916475-C-A 13804595-C-A **
3660418-G-T 3792377-G-T **
16037406-C-A 13925526-C-A **
3721312-C-A 3853271-C-A **
19914401-C-A 17802521-C-A P5_Prx **
15073435-C-A 12961525-C-A **
17552043-C-A 15440163-C-A **
19914421-C-A 17802541-C-A P5_Prx **
3436453-A-C 3568412-A-C L355 **
22244567-C-T 20082681-C-T FGC69730 DYZ19 **
18165467-T-A 16053587-T-A BY211759 14×TTA**
5710505-C-A 5842464-C-A **
11012310-T-A **
14515648-G-T 12403849-G-T **
10668986-C-A **
13471987-G-A 11316311-G-A **
7645202-A-ATT 7777161-A-ATT 17×T**
7705091-C-A 7837050-C-A **
15161441-C-A 13049527-C-A **
10664827-T-C **
19914397-C-A 17802517-C-A P5_Prx **
28660733-C-A 26514586-C-A **
9730531-G-T 9892922-G-T IR3_Prx **
3330915-C-A 3462874-C-A **
27808479-G-T 25662332-G-T P1_Y2 **
7858385-C-A 7990344-C-A **
11004474-C-A **
23954174-C-A 21808027-C-A **
21863911-C-A 19702025-C-A **
10852043-C-A **
13907726-C-A 11787020-C-A **
9119983-C-A **
56845593-G-A **
16920169-C-A 14808289-C-A **
5200378-G-A 5332337-G-A BY58571 **
3498208-C-A 3630167-C-A **
6699525-C-A 6831484-C-A **
4740814-C-A 4872773-C-A **
7234462-C-A 7366421-C-A **
4805081-C-A 4937040-C-A **
7205569-C-T 7337528-C-T **
4872759-C-A 5004718-C-A **
7152811-A-G 7284770-A-G **
7083105-C-T 7215064-C-T **
7626224-A-G 7758183-A-G **
6989253-G-A 7121212-G-A **
5205137-G-T 5337096-G-T **
5758866-G-A 5890825-G-A **
5824700-G-A 5956659-G-A **
6010305-C-A 6142264-C-A **
6772180-T-G 6904139-T-G **
6428648-A-G 6560607-A-G **
6759270-C-A 6891229-C-A **
7453538-G-T 7585497-G-T IR1_L **
7412839-A-G 7544798-A-G **
3454966-G-T 3586925-G-T **
8676981-C-A 8808940-C-A **
8290862-G-T 8422821-G-T **
14701215-C-A 12589281-C-A **
10820563-C-A **
9639016-C-A 9801407-C-A IR3_Prx **
7132070-C-A 7264029-C-A **
7947151-C-A 8079110-C-A **
15786701-C-A 13674821-C-A **
2728101-C-A 2860060-C-A **
7897241-G-T 8029200-G-T **
6479125-G-A 6611084-G-A **
2850959-T-C 2982918-T-C **
7723688-G-T 7855647-G-T **
2682722-C-A 2814681-C-A **
2850978-G-C 2982937-G-C **
2850967-TGGGC-T 2982926-TGGGC-T **
2850966-C-CAGA 2982925-C-CAGA **
10860876-C-A ***
28661485-ACT-A 26515338-ACT-A ***
10760380-C-A ***
7755442-T-C 7887401-T-C ***
23563689-C-T 21401803-C-T ***
7411603-C-A 7543562-C-A ***
6997004-TA-T,TAA 7128963-TA-T,TAA 12×A***
23441147-C-A 21279261-C-A ***
6910435-CTTT-C,CTTTT 7042394-CTTT-C,CTTTT 16×T***
13478319-C-A 11322643-C-A ***
17352486-C-A 15240606-C-A ***
23126985-A-G 20965099-A-G ***
21185235-C-T 19023349-C-T ***
15076180-C-CTT 12964270-C-CTT 16×T***
18933080-A-G 16821200-A-G ***
22809927-C-A 20648041-C-A ***
13856341-T-C 11735635-T-C ***
13856358-G-C 11735652-G-C ***
9403262-C-A 9565653-C-A ***
19268974-G-GA 17157094-G-GA 9×A***
17547958-C-A 15436078-C-A ***
14102359-TTCTATCTATCTA-T 11981653-TTCTATCTATCTA-T 9×TCTA***
10965536-C-T ***
11665561-G-A ***
11654528-C-T FGC82066 ***
4282389-C-A 4414348-C-A ***
13488839-CGGT-C,CGG 11333163-CGGT-C,CGG ***
10965573-C-CCTCCG ***
10893870-C-A ***
19395634-C-A 17283754-C-A ***
21558872-C-A 19396986-C-A ***
10789214-C-A ***
18725145-C-A 16613265-C-A ***
13856332-G-T 11735626-G-T A18137 ***
20829758-G-T 18667872-G-T P4_Gap ***
28804626-C-T 26658479-C-T ***
21340452-C-A 19178566-C-A ***
5818135-T-C 5950094-T-C ***
10965575-A-AATACG ***
56827676-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 42948915660674913377414536
Used in age calculations915660674913377414536
Counts of SNPs2322
Variant counts last updated 2019-10-10 02:53:08.



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