Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5625 > L226 > FGC5660 > Z17669 > A10950 > DC29 > DC31 > DC30 > DC189

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC2
XE54K
14664356-T-C 12552422-T-C FGC79631 YY+
22458344-G-C 20296458-G-C BY43881 FGC79634 DYZ19 +
13297839-C-T 11142163-C-T FGC79629 +
23030641-C-A 20868755-C-A FGC79635 YY+
18715441-A-G 16603561-A-G FGC79633 YY+
5210401-C-T 5342360-C-T FGC79626 +
29396-T-G FGC76931 +
17343950-A-G 15232070-A-G FGC79632 YY+
8292-T-G FGCLR226 +
24880-A-C FGCLR159 *
23606-G-T FGCLR34 *
23468-G-A FGCLR33 *
14991276-G-. 12879361-A-G A18824 *
59011617-TTATC-T 56865470-TTATC-T **
59024664-T-C 56878517-T-C **
13529834-C-CA 11374158-C-CA **
5036583-CATATATATAT-C 5168542-CATATATATAT-C 27×AT**
27327235-G-A 25181088-G-A P1_g3 **
4650472-G-GAT 4782431-G-GAT 24×AT**
59024657-C-T 56878510-C-T **
10957767-N-A **
10908520-N-A **
10674059-N-T **
58970661-C-CT 56824514-C-CT **
58974960-CCATTG-C 56828813-CCATTG-C **
59001365-TATA-T 56855218-TATA-T **
56853606-G-T **
10669738-N-T **
35936-G-C FGC77603 **
30520-C-A FGCLR36 **
27093-T-G **
27049-G-T FGC77613 **
58971672-C-T 56825525-C-T **
58999713-C-A 56853566-C-A **
35882-G-A FGC77175 **
27104-T-C **
16996801-G-A 14884921-G-A **
15799114-CCCTTCCTTCCTTCCTT-C 13687234-CCCTTCCTTCCTTCCTT-C 14×CCTT**
6010535-A-T 6142494-A-T **
9111869-N-G **
22289284-T-G 20127398-T-G DYZ19 **
59027472-T-TAAAA 56881325-T-TAAAA 11×A**
59011613-C-T 56865466-C-T **
31965-T-G **
31954-G-A **
19126436-C-CAAAAAAAAA 17014556-C-CAAAAAAAAA 25×A**
10694196-N-T **
7264500-G-A 7396459-G-A **
58862366-T-G 56728505-A-C **
59027563-C-CG 56881416-C-CG **
58998532-A-G 56852385-A-G **
22503027-A-G 20341141-A-G DYZ19 **
15121328-C-A 13009415-C-A ***
15291374-A-C 13179473-A-C ***
20617830-A-C 18455944-A-C P4_Prx ***
20569719-C-T 18407833-C-T P5_Dst ***
17699252-G-A 15587372-G-A ***
20015292-T-G 17903412-T-G P5_Prx ***
15630611-T-C 13518731-T-C ***
19721422-G-A 17609542-G-A P5_Prx ***
17955338-C-A 15843458-C-A ***
19559347-T-A 17447467-T-A ***
18007337-T-C 15895457-T-C P7_Gap ***
18845659-A-G 16733779-A-G ***
19029610-G-T 16917730-G-T ***
16709815-G-A 14597935-G-A ***
18539335-A-G 16427455-A-G ***
15804142-A-G 13692262-A-G ***
19015514-G-C 16903634-G-C ***
19015502-G-A 16903622-G-A ***
17155414-A-G 15043534-A-G ***
15889443-G-T 13777563-G-T ***
16410688-A-T 14298808-A-T ***
18969045-T-C 16857165-T-C ***
16710272-C-T 14598392-C-T ***
16684752-T-C 14572872-T-C ***
17697551-T-C 15585671-T-C ***
13745270-G-C 11589594-G-C ***
15121309-A-C 13009396-A-C ***
9910161-G-T 10072552-G-T ***
10862578-C-T ***
10862570-A-C ***
10862562-T-A ***
10862555-G-C ***
10809667-T-C ***
10756803-A-T ***
10694194-N-G ***
10616542-C-T ***
9910017-G-A 10072408-G-A ***
10862615-T-C ***
9909984-C-G 10072375-C-G ***
9909976-T-A 10072367-T-A ***
9654086-A-G 9816477-A-G IR3_Prx ***
9580227-T-C 9742618-T-C IR3_Prx ***
9502396-C-A 9664787-C-A ***
9402942-T-C 9565333-T-C ***
8712463-A-C 8844422-A-C ***
7574751-T-C 7706710-T-C ***
10862612-T-C ***
10925605-G-A ***
15116685-G-T 13004772-G-T ***
13733950-T-C 11578274-T-C ***
14464472-C-G 12343745-C-G ***
14261194-T-G 12140488-T-G ***
14213479-G-A 12092773-G-A ***
14198731-A-C 12078025-A-C ***
14111071-C-A 11990365-C-A ***
14111044-G-T 11990338-G-T ***
21276695-A-G 19114809-A-G ***
14058004-C-T 11937298-C-T ***
13459316-C-T 11303640-C-T ***
10926353-C-T ***
13458591-C-G 11302915-C-G ***
13453135-A-G 11297459-A-G ***
13382454-G-T 11226778-G-T ***
13242523-C-T 11086847-C-T ***
13242515-T-G 11086839-T-G ***
13242500-C-T 11086824-C-T ***
11033828-T-A ***
11021447-C-T ***
21275988-A-C 19114102-A-C ***
22359445-T-C 20197559-T-C DYZ19 ***
21420614-C-A 19258728-C-A ***
13451160-CTCTATTC-TTA 11295484-CTCTATTC-TTA ***
10754776-ATTCTAT-TC ***
10744351-TGCAGA-CCCAGG ***
10691342-TACTCCA-CACTCCT ***
10668339-GC-CCAATCCACTCCACTCA ***
10653756-CTC-TTG ***
9910107-TCA-CCT 10072498-TCA-CCT ***
9910081-GT-AA 10072472-GT-AA ***
4790634-G-GAA 4922593-G-GAA 14×A***
2930319-GTTTTT-G 3062278-GTTTTT-G 26×T***
17678621-CTTTTTTT-C 15566741-CTTTTTTT-C 26×T***
10862612-TTCT-CTCC ***
56835849-CACTCCATTCCAATCCGTGC-ACTCCATTCCAATCCATGT ***
56873103-A-T ***
56869153-G-A ***
56862459-T-G ***
56852078-A-G ***
56852048-T-A ***
56828462-A-G ***
56746835-C-G ***
56737302-T-A ***
10862570-AC-CA ***
10925574-TACTCT-CACTTC ***
56721596-G-T ***
18017108-G-GATATAT 15905228-G-GATATAT 22×AT***
56827798-CTAG-TTAA ***
56826846-CGATTCCATTCCATTCAATTCC-AGATTAG ***
28553992-CAAAAAAAAA-C 26407845-CAAAAAAAAA-C 28×A***
28253524-CC-AA 26107377-CC-AA P1_b4 ***
22359611-TGAAT-CATAG 20197725-TGAAT-CATAG DYZ19 ***
22341533-AG-GC 20179647-AG-GC DYZ19 ***
22259637-CA-TC 20097751-CA-TC DYZ19 ***
21608032-TAAAAAAAA-T 19446146-TAAAAAAAA-T 46×A***
21367865-T-TAC 19205979-T-TAC ***
17323445-A-AGG 15211565-A-AGG ***
10964764-ATCT-CTCC ***
16344414-T-TTCTTCG 14232534-T-TTCTTCG ***
11653101-NN-GA ***
13531753-CAAAAAAA-C 11376077-CAAAAAAA-C 23×A***
13459316-CATTGCATTC-TATTCCACTT 11303640-CATTGCATTC-TATTCCACTT ***
13453220-ATTCCAA-CTTCTGT 11297544-ATTCCAA-CTTCTGT ***
13452815-ACAT-CCAC 11297139-ACAT-CCAC ***
13446502-TTGG-CTGA 11290826-TTGG-CTGA ***
11033828-TTCC-ATCA ***
11027142-GAATCTCC-CAACCTCT ***
10965676-TGAGCA-GGAGTG ***
56724472-T-A ***
56721595-G-T ***
21475176-G-T 19313290-G-T ***
22364751-G-A 20202865-G-A DYZ19 ***
24862279-T-G 22716132-T-G P3_b2 ***
24668503-C-A 22522356-C-A P3_b2 ***
23564460-G-A 21402574-G-A ***
23564452-A-T 21402566-A-T ***
23230174-G-A 21068288-G-A ***
23087520-T-C 20925634-T-C ***
22988466-C-T 20826580-C-T ***
22512384-C-T 20350498-C-T BY225855 DYZ19 ***
22481226-C-G 20319340-C-G DYZ19 ***
22364743-G-A 20202857-G-A DYZ19 ***
24942636-C-A 22796489-C-A g1 ***
22341509-A-C 20179623-A-C DYZ19 ***
22341463-C-T 20179577-C-T DYZ19 ***
22341437-T-G 20179551-T-G DYZ19 ***
22324985-T-C 20163099-T-C DYZ19 ***
22283470-G-T 20121584-G-T DYZ19 ***
22268769-A-T 20106883-A-T DYZ19 ***
22268531-C-T 20106645-C-T DYZ19 ***
22259637-C-T 20097751-C-T DYZ19 ***
21965110-A-C 19803224-A-C ***
24862327-T-G 22716180-T-G P3_b2 ***
25181231-G-T 23035084-G-T g1 ***
56721406-G-T ***
26956605-G-T 24810458-G-T P1_r3 ***
56715545-T-A ***
56714175-T-G ***
56714076-G-T ***
56714065-T-G ***
56676383-G-C ***
28819331-G-A 26673184-G-A ***
27822612-G-C 25676465-G-C P1_Y2 ***
27585732-T-C 25439585-T-C P1_Y2 ***
27328010-T-A 25181863-T-A P1_g3 ***
26724545-G-A 24578398-G-A P1_g2 ***
25241027-A-G 23094880-A-G P2_r1 ***
26713714-A-C 24567567-A-C P1_g2 ***
26707044-C-A 24560897-C-A P1_g2 ***
26707020-C-A 24560873-C-A P1_g2 ***
26707004-C-A 24560857-C-A P1_g2 ***
26706986-C-A 24560839-C-A P1_g2 ***
26480325-G-A 24334178-G-A P1_Y1 ***
26454504-C-T 24308357-C-T P1_Y1 ***
26405078-G-A 24258931-G-A P1_Y1 ***
25956060-T-A 23809913-T-A P1_Y1 ***
25625922-C-T 23479775-C-T P1_b3 ***
7574745-A-G 7706704-A-G ***
21805280-NN-TC ***
7296874-C-T 7428833-C-T ***
59013265-G-T 56867118-G-T ***
59019529-CACACACACACACACACACACACAA-C 56873382-CACACACACACACACACACACACAA-C ***
59019460-G-A 56873313-G-A ***
59018716-G-A 56872569-G-A ***
59018698-C-T 56872551-C-T ***
59018689-C-A 56872542-C-A ***
59018641-G-A 56872494-G-A ***
59017340-G-T 56871193-G-T ***
59013267-C-T 56867120-C-T ***
59012162-G-A 56866015-G-A ***
59020900-T-C 56874753-T-C ***
59009432-G-T 56863285-G-T ***
58974623-G-T 56828476-G-T ***
13453663-C-T 11297987-C-T ***
9216148-A-AG 9378539-A-AG ***
7359770-T-A 7491729-T-A ***
22229643-AGGAA-TGGAG 20067757-AGGAA-TGGAG DYZ19 ***
22446667-TGA-ATT 20284781-TGA-ATT DYZ19 ***
9218519-TGTTTGTG-AGTT 9380910-TGTTTGTG-AGTT ***
59020455-A-G 56874308-A-G ***
22287125-AA-GT 20125239-AA-GT DYZ19 ***
22264032-GT-G 20102146-GT-G DYZ19 ***
25207898-T-A 23061751-T-A P2_r1 ***
13707692-TGC-GGA 11552016-TGC-GGA ***
23695838-A-C 21533952-A-C ***
58872496-C-T 56718375-G-A ***
58974618-G-T 56828471-G-T ***
26991056-G-T 24844909-G-T P1_r4 ***
58862295-A-G 56728576-T-C ***
13713471-GTG-CTC 11557795-GTG-CTC ***
22989187-T-G 20827301-T-G ***
13745206-ATTCG-GTTCA 11589530-ATTCG-GTTCA ***
27583000-C-CT 25436853-C-CT P1_Y2 22×T***
59008766-ATCTTT-CTC 56862619-ATCTTT-CTC ***
22260713-C-T 20098827-C-T DYZ19 ***
28253588-T-C 26107441-T-C P1_b4 ***
59002250-CAAA-C 56856103-CAAA-C 14×A***
3822962-GAT-G 3954921-GAT-G 26×AT***
13329879-A-AAT 11174203-A-AAT 25×AT***
22259630-A-C 20097744-A-C BY19200BY19217 DYZ19 ***
58853569-ATTCCA-T 56737297-TGGAAT-A ***
13453204-CAC-GAT 11297528-CAC-GAT ***
14111039-A-C 11990333-A-C ***
22367932-G-T 20206046-G-T DYZ19 ***
59023728-TT-GC 56877581-TT-GC ***
58972169-GTT-TTG 56826022-GTT-TTG ***
24387569-T-C 22241422-T-C ***
59016927-CA-TG 56870780-CA-TG ***
59014273-C-CATT 56868126-C-CATT ***
22260697-G-A 20098811-G-A DYZ19 ***
59014546-G-T 56868399-G-T ***
13529856-GGCG-TGCA 11374180-GGCG-TGCA ***
58876856-A-G 56714015-T-C ***
22435192-G-C 20273306-G-C DYZ19 ***
28253566-T-A 26107419-T-A P1_b4 ***
13745150-G-T 11589474-G-T ***
58971672-CGT-TGC 56825525-CGT-TGC ***
22236806-C-A 20074920-C-A DYZ19 ***
22359444-C-A 20197558-C-A DYZ19 ***
22229609-T-C 20067723-T-C DYZ19 ***
13868464-C-A 11747758-C-A ***
13448640-ATTCCATTCCATTCCATTCCATTCCAT-A 11292964-ATTCCATTCCATTCCATTCCATTCCAT-A ***
22512362-G-A 20350476-G-A Z9711 DYZ19 ***
22260699-G-T 20098813-G-T DYZ19 ***
22490692-C-G 20328806-C-G DYZ19 ***
58998482-C-T 56852335-C-T ***
13745182-A-C 11589506-A-C ***
28369982-T-TTA 26223835-T-TTA P1_gr2 17×TA***
13529859-G-A 11374183-G-A ***
25207901-G-A 23061754-G-A P2_r1 ***
59024202-A-C 56878055-A-C ***
59023633-G-T 56877486-G-T ***
58998489-G-GA 56852342-G-GA ***
28628398-T-TTA 26482251-T-TTA 17×TA***
17081284-TATAA-T 14969404-TATAA-T ***
13563647-C-G 11407971-C-G ***
13542965-A-AAAT 11387289-A-AAAT ***
13242525-T-C 11086849-T-C ***
13745188-C-A 11589512-C-A ***
22481210-G-C 20319324-G-C DYZ19 ***
58977909-TG-CT 56831762-TG-CT ***
22229665-AC-TG 20067779-AC-TG DYZ19 ***
24895633-G-A 22749486-G-A g1 17×A***
28794959-TG-T 26648812-TG-T ***
22367929-C-G 20206043-C-G DYZ19 ***
58858790-C-A 56732081-G-T ***
13233319-GAAAA-G 11077643-GAAAA-G 17×A***
13529856-G-T 11374180-G-T ***
13448943-GCACGA-CCACGC 11293267-GCACGA-CCACGC ***
24446852-AATATATAT-A 22300705-AATATATAT-A 15×AT***
6127609-C-T 6259568-C-T ***
10871219-N-T ***
10756821-GCTC-ACTA ***
10756695-CTTCC-ATTCA ***
10694193-NNN-GGC ***
10691150-AA-TC ***
9116370-NN-GT ***
15612-AA-TC ***
13413-TAC-GGT ***
11660375-N-T ***
10694195-N-C ***
10909100-NN-TC ***
10694193-N-G ***
9116371-N-T ***
9116370-N-G ***
14875-T-G ***
14874-G-A ***
14873-A-T ***
11021346-CCTCTCTACTG-C ***
13459325-C-T 11303649-C-T ***
10908476-GG-AC ***
10910829-CTGA-TG ***
22592425-G-T 20430539-G-T ***
36453-T-G FGC77518 ***
4500479-T-G 4632438-T-G ***
4421391-C-T 4553350-C-T ***
4421048-C-T 4553007-C-T ***
4289954-C-T 4421913-C-T ***
4289924-A-G 4421883-A-G ***
4289917-C-T 4421876-C-T ***
3612091-C-T 3744050-C-T ***
3315577-C-T 3447536-C-T ***
31930-A-G ***
10961383-CTCCACTCC-TTCCTCTCT ***
31923-C-T ***
27221-T-C ***
7451267-T-G 7583226-T-G IR1_L ***
56830309-ATG-TTA ***
58914506-C-T 56676365-G-A ***
12514212-AAAAAA-TTATAT ***
11654119-A-AATTC ***
11654113-GGTGGGAG-AATTCA ***
13451185-CTCCTTT-TTC 11295509-CTCCTTT-TTC ***
5094042-CTT-C 5226001-CTT-C 27×T***
56853683-C-T ***
58865770-C-T 56725101-G-A ***
9910076-G-C 10072467-G-C ***
15131865-TCCTC-T 13019952-TCCTC-T 5×CCTC***
9910130-G-T 10072521-G-T ***
9910129-T-G 10072520-T-G ***
9910127-T-C 10072518-T-C ***
9910109-A-T 10072500-A-T ***
9910107-T-C 10072498-T-C ***
9910082-T-A 10072473-T-A ***
9910081-G-A 10072472-G-A ***
9910063-G-A 10072454-G-A ***
22259638-A-C 20097752-A-C DYZ19 ***
9910047-T-G 10072438-T-G ***
9910039-A-T 10072430-A-T ***
9910031-A-G 10072422-A-G ***
9910007-C-G 10072398-C-G ***
9910057-A-C 10072448-A-C ***
7717741-TTTCT-CTTCC 7849700-TTTCT-CTTCC ***
13450521-CTTCACTCCAC-ATCCATCCCAT 11294845-CTTCACTCCAC-ATCCATCCCAT ***
58869123-A-T 56721748-T-A ***
8232951-CTAGCAGTT-C 8364910-CTAGCAGTT-C ***
21913034-C-A 19751148-C-A ***
22489873-C-T 20327987-C-T DYZ19 ***
10862571-C-A ***
11654120-G-A ***
10849636-AACACTACACTACACT-A ***
15379889-G-A 13268009-G-A ***
10925615-C-T ***
4949181-G-GT 5081140-G-GT 12×T***
56678071-A-T ***
11031280-A-C ***
10925604-T-C ***
11021454-C-G ***
22715144-T-TA 20553258-T-TA 23×A***
26997329-C-T 24851182-C-T P1_r4 ***
10985246-T-A ***
14331131-CTTTT-C 12210425-CTTTT-C 25×T***
56750026-G-T ***
23802080-C-T 21640194-C-T ***
25246447-CTT-C 23100300-CTT-C P2_r1 41×T***
10925610-G-A ***
28799-C-G FGC80640 ***
26906643-C-A 24760496-C-A P1_r3 ***
5493431-CTTTTTT-C 5625390-CTTTTTT-C 24×T***
56828129-TAT-CATTAAATTCGAA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: XE54K1613826795928738408382
Used in age calculations1613826795928738408382
Counts of SNPs44
Variant counts last updated 2019-10-28 04:26:58.



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