Tree Position

A0-T-YP2191 > P305[A1] > L413/PF1409/V31 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2647 > L460 > M436 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
92257
19615883-G-A 17504003-G-A P5_Prx YA*
19620231-C-A 17508351-C-A P5_Prx YA*
13489605-C-A 11333929-C-A A*
19712015-C-T 17600135-C-T P5_Prx A*
19788175-A-G 17676295-A-G P5_Prx A*
18353116-G-GTA 16241236-G-GTA P6_Prx 8×TAA*
20644295-T-A 18482409-T-A P4_Prx A*
25893578-T-C 23747431-T-C P1_Y1 A*
6264134-G-T 6396093-G-T IR3_Dst A*
26244112-C-T 24097965-C-T P1_Y1 A*
19668983-A-C 17557103-A-C BY13926 P5_Prx A*
8696094-C-CA 8828053-C-CA 12×AA*
22467618-C-A 20305732-C-A BY14017 DYZ19 +
22752053-T-G 20590167-T-G YY+
22506605-G-A 20344719-G-A DYZ19 +
21258489-C-A 19096603-C-A YY+
21692998-T-C 19531112-T-C BY25385 YY+
16761721-G-T 14649841-G-T YY+
8237715-C-A 8369674-C-A YY+
13806561-AGAATGGAATGGAATG-A 11685855-AGAATGGAATGGAATG-A 7×GAATG+
13845030-G-T 11724324-G-T +
13864971-G-A 11744265-G-A BY14650 +
14345343-A-G 12224638-A-G YY+
22953153-C-T 20791267-C-T BY14656 YY+
22511254-A-C 20349368-A-C BY50653 DYZ19 +
8317468-G-T 8449427-G-T YY+
9388556-C-T 9550947-C-T BY79099 Y+
9791977-C-T 9954368-C-T Y+
28789005-T-A 26642858-T-A +
16454546-T-C 14342666-T-C YY+
17393212-C-T 15281332-C-T YY+
2705623-G-GA 2837582-G-GA +
8491250-G-A 8623209-G-A YY+
17110113-A-C 14998233-A-C YY+
8421355-C-T 8553314-C-T BY14648 YY+
13581-T-C +
22486678-G-C 20324792-G-C DYZ19 *
19885520-A-C 17773640-A-C P5_Prx *
2739932-G-GT 2871891-G-GT 10×T*
16365135-A-AATAGATAGATAGATAG 14253255-A-AATAGATAGATAGATAG 9×ATAG*
13458668-TTCCATTCCAT-T,TTCCACTCCAC 11302992-TTCCATTCCAT-T,TTCCACTCCAC *
17275038-A-G 15163158-A-G BY172318 YY*
21203553-A-AT,ATT 19041667-A-AT,ATT 13×T*
6750194-C-A 6882153-C-A **
6444836-C-CTATA 6576795-C-CTATA 12×TA**
2773707-AAAAT-A 2905666-AAAAT-A **
5664252-C-A 5796211-C-A **
6116914-A-T 6248873-A-T **
4046758-G-T 4178717-G-T **
5335004-C-A 5466963-C-A **
3274847-G-T 3406806-G-T **
5253863-C-A 5385822-C-A **
4954128-G-T 5086087-G-T **
4931937-G-T 5063896-G-T **
4428026-C-A 4559985-C-A **
4262372-G-T 4394331-G-T **
3777988-T-A 3909947-T-A **
6773554-T-G 6905513-T-G **
4046905-G-T 4178864-G-T **
4046829-G-T 4178788-G-T **
26248920-T-TA 24102773-T-TA P1_Y1 15×A**
7425284-GAA-G 7557243-GAA-G 10×A**
6978470-C-A 7110429-C-A **
8017063-T-C 8149022-T-C **
10693791-C-A **
10687609-C-CCATTT **
10683662-T-G **
10661188-A-G **
9962351-T-A 10124742-T-A **
9864791-G-A 10027182-G-A **
9812333-T-C 9974724-T-C **
9725140-T-A 9887531-T-A IR3_Prx **
9044132-A-G 9206523-A-G **
8379073-C-A 8511032-C-A **
8172744-G-T 8304703-G-T **
7938133-C-A 8070092-C-A **
7053327-C-A 7185286-C-A **
7935811-G-A 8067770-G-A **
7866733-GA-G 7998692-GA-G **
7708757-C-A 7840716-C-A **
7670979-T-A 7802938-T-A **
7651346-T-G 7783305-T-G **
7470075-G-T 7602034-G-T IR1_L **
7355958-C-A 7487917-C-A **
7309992-G-A 7441951-G-A **
7269801-T-G 7401760-T-G **
7269795-T-G 7401754-T-G **
7063909-C-A 7195868-C-A **
13927496-C-A 11806790-C-A **
14714679-T-C 12602746-T-C **
14630296-C-A 12518365-C-A **
7702730-C-A 7834689-C-A **
10658390-ATCTAC-A **
10789741-C-A **
6971713-C-T 7103672-C-T **
10660223-G-T **
10844829-G-T **
6775358-C-A 6907317-C-A **
23823456-C-A 21661570-C-A **
11021351-CTACTG-C **
10926601-C-G **
10679159-C-T **
26463093-A-T 24316946-A-T P1_Y1 **
19479726-TGTGC-T 17367846-TGTGC-T **
10991727-C-T **
6490670-C-A 6622629-C-A **
14716789-G-T 12604857-G-T **
10798684-C-CTCCAT **
4969947-G-T 5101906-G-T **
10809022-G-A **
10679176-G-A **
16084175-G-T 13972295-G-T **
10679164-A-C **
21818140-C-A 19656254-C-A **
19128538-C-A 17016658-C-A **
10764604-C-G **
28155853-G-T 26009706-G-T P1_b4 **
8151692-C-A 8283651-C-A **
18087017-C-A 15975137-C-A **
7397568-C-A 7529527-C-A **
10869992-C-CAACCA **
13894237-C-A 11773531-C-A **
16745310-A-C 14633430-A-C **
10939440-C-A **
3012548-G-T 3144507-G-T **
10773333-C-A **
14912146-C-A 12800213-C-A **
10744716-C-A **
23434460-C-A 21272574-C-A **
28497276-C-A 26351129-C-A **
19938644-A-C 17826764-A-C P5_Prx **
10754893-A-ATTCTT **
8753774-CT-C 8885733-CT-C **
17912967-C-A 15801087-C-A **
13878625-G-T 11757919-G-T **
14238410-GC-G 12117704-GC-G **
10809055-C-T **
7358158-C-A 7490117-C-A **
3374282-G-T 3506241-G-T **
10809047-C-G **
14568295-C-A 12456495-C-A **
13962187-C-A 11841481-C-A **
17749333-C-A 15637453-C-A **
10805137-C-A **
13582867-C-A 11427191-C-A **
10764595-C-A **
14471863-C-A 12351132-C-A **
19129097-C-A 17017217-C-A **
22517179-CA-C 20355293-CA-C **
7579878-G-T 7711837-G-T **
10744788-C-A **
11029847-C-T **
10767877-A-C **
19071385-T-G 16959505-T-G **
21193647-C-A 19031761-C-A **
21111649-C-A 18949763-C-A **
20909264-G-T 18747378-G-T P4_Dst **
20712287-TACACACAC-T 18550401-TACACACAC-T P4_Prx 16×AC**
20000427-C-A 17888547-C-A P5_Prx **
19529304-G-T 17417424-G-T **
19464930-C-A 17353050-C-A **
19433248-T-C 17321368-T-C **
19367464-C-A 17255584-C-A **
19274708-G-T 17162828-G-T **
19250328-GC-G 17138448-GC-G **
18996548-G-A 16884668-G-A **
21234646-G-T 19072760-G-T **
18930008-A-G 16818128-A-G **
18902090-G-A 16790210-G-A **
18765054-T-C 16653174-T-C **
18524463-C-T 16412583-C-T P6_Dst **
18511641-T-A 16399761-T-A P6_Dst **
18511575-T-C 16399695-T-C P6_Dst **
18239545-C-A 16127665-C-A **
18075466-T-C 15963586-T-C **
18008681-T-TG 15896801-T-TG P7_Dst **
17928902-G-T 15817022-G-T **
17927474-C-T 15815594-C-T **
17405852-C-A 15293972-C-A **
21194368-T-C 19032482-T-C **
21394768-A-G 19232882-A-G **
17253921-C-T 15142041-C-T **
23810551-G-T 21648665-G-T **
13456-T-C **
56839613-G-T **
56838492-G-T **
28727883-C-T 26581736-C-T **
28660922-C-A 26514775-C-A **
28593832-A-G 26447685-A-G **
28532923-C-A 26386776-C-A **
28483870-CA-C 26337723-CA-C **
28475003-A-T 26328856-A-T **
28474988-T-A 26328841-T-A **
26454725-C-A 24308578-C-A P1_Y1 **
24406339-G-T 22260192-G-T **
23777667-C-A 21615781-C-A **
21468730-C-A 19306844-C-A **
23774842-C-A 21612956-C-A **
23269593-C-A 21107707-C-A **
22885061-G-T 20723175-G-T **
22835213-C-A 20673327-C-A **
22366254-C-A 20204368-C-A DYZ19 **
22315801-T-C 20153915-T-C BY41309 DYZ19 **
22306971-C-A 20145085-C-A DYZ19 **
22278325-C-T 20116439-C-T BY14015 DYZ19 **
22085578-C-A 19923692-C-A **
21703281-C-A 19541395-C-A **
21665585-C-T 19503699-C-T **
21551405-G-T 19389519-G-T **
17283420-G-A 15171540-G-A **
17188081-ACCCAATAATTAATTTATATGTATGAT-A 15076201-ACCCAATAATTAATTTATATGTATGAT-A **
10802470-G-A **
11022439-A-G **
13485480-G-C 11329804-G-C **
13456109-C-A 11300433-C-A **
13341182-C-A 11185506-C-A **
13291810-T-G 11136134-T-G **
13290993-A-C 11135317-A-C **
13241515-G-T 11085839-G-T **
11030268-G-T **
11029858-C-T **
15406727-C-A 13294847-C-A **
11029837-T-C **
11026102-C-A **
10998730-G-A **
13545415-A-G 11389739-A-G **
10965620-A-G **
10965614-C-T **
10952270-C-T **
10886320-C-A **
10877790-T-TTAAAC **
10872737-T-G **
10865414-C-A **
10860331-C-A **
10856048-T-TCACTC **
10827040-A-G **
10819941-A-C **
10816249-G-C **
13509207-G-T 11353531-G-T **
13705519-T-G 11549843-T-G **
17147473-C-A 15035593-C-A **
15279387-C-T 13167486-C-T **
16778059-C-A 14666179-C-A **
16475016-G-T 14363136-G-T **
16455218-C-T 14343338-C-T **
16308987-T-A 14197107-T-A **
16270447-C-A 14158567-C-A **
16177275-C-A 14065395-C-A **
16033829-C-A 13921949-C-A **
15816453-G-A 13704573-G-A **
15612365-C-A 13500485-C-A **
15527801-C-A 13415921-C-A **
15482755-C-G 13370875-C-G **
15332393-A-G 13220511-A-G **
15248201-T-G 13136287-T-G **
13713473-G-A 11557797-G-A BY50609 **
15104812-G-A 12992900-G-A **
15070509-G-T 12958600-G-T **
15059912-T-G 12948004-T-G **
14627281-C-A 12515349-C-A **
14423213-C-A 12302488-C-A **
14361570-T-G 12240865-T-G **
14191189-G-A 12070483-G-A **
14068442-G-A 11947736-G-A **
14068435-C-T 11947729-C-T **
14068429-G-C 11947723-G-C **
13932794-G-T 11812088-G-T **
13805241-G-T 11684535-G-T **
10967513-C-A **
10869977-C-G **
23676-T-G **
22965741-T-G 20803855-T-G **
10995795-A-T **
10995791-C-G **
10926704-A-ACGCCG **
10926684-AT-A **
10926673-CATTCCGTTG-C **
56839513-A-G **
10972585-C-A **
18045371-CTTTT-C 15933491-CTTTT-C 18×T**
16598977-G-T 14487097-G-T **
10950559-T-C **
13859449-C-A 11738743-C-A **
10808995-T-C **
11026067-G-A **
10995846-C-A **
2740497-G-T 2872456-G-T **
10679183-A-T **
10799640-C-G **
10799599-C-CTGTTCCATTA **
10764633-T-A **
10764624-C-G **
10764584-C-T **
10764576-A-AT **
10764574-C-CCCCT **
10973633-G-A **
23260658-C-A 21098772-C-A **
15059922-C-G 12948014-C-G **
10978777-C-A **
10995811-C-A **
10995851-C-A **
17675541-GAAAA-G 15563661-GAAAA-G 20×A**
10679113-A-T **
10926652-C-A **
10926651-T-A **
13963904-C-A 11843198-C-A **
10763313-C-G **
10809024-ATTCCG-A **
13457642-G-GA 11301966-G-GA **
13457639-C-A 11301963-C-A **
9571870-GT-G 9734261-GT-G IR3_Prx **
10816257-A-C **
10678187-T-C **
21428676-C-A 19266790-C-A **
10796129-T-C **
8703659-A-ATT 8835618-A-ATT 18×T**
5859022-C-A 5990981-C-A **
21627120-CA-C 19465234-CA-C 9×A**
28679437-C-A 26533290-C-A **
56850346-CA-C **
56850343-G-T **
56850321-T-A **
10973666-C-T **
22529817-C-A 20367931-C-A **
11036120-TTCTCC-T **
10763280-C-T **
10763277-A-C **
15491882-C-T 13380002-C-T **
10986420-A-C **
13213975-T-G 11058299-T-G **
10683667-T-C **
10895858-T-C BY83967 **
10895831-C-A **
13457678-A-C 11302002-A-C **
20459067-C-A 18297181-C-A P5_Dst **
10755422-CA-C **
11022398-A-T **
11022342-T-C **
11001866-T-C **
10995856-T-C **
19059747-CTT-C 16947867-CTT-C 25×T**
10764617-C-T **
13466443-C-A 11310767-C-A **
19389717-TAA-T 17277837-TAA-T 17×A**
58982754-C-T 56836607-C-T **
13707392-A-C 11551716-A-C **
18867339-CTTT-C 16755459-CTTT-C 24×T**
6757820-CA-C 6889779-CA-C 13×A**
13566948-CAT-C 11411272-CAT-C 12×AT**
10663412-T-TTACTG **
58976506-A-T 56830359-A-T F14112 **
17946635-CTTTT-C 15834755-CTTTT-C 20×T**
4388469-CA-C 4520428-CA-C 14×A**
58996467-T-C 56850320-T-C **
13697987-G-T 11542311-G-T **
2892542-ATTTTTT-A 3024501-ATTTTTT-A 18×T**
28474965-C-CA 26328818-C-CA 18×A**
2758842-C-CA 2890801-C-CA 19×A**
17648009-CAAAAAA-C 15536129-CAAAAAA-C 17×A**
13453289-C-A 11297613-C-A **
19346418-C-T 17234538-C-T **
26089917-CT-C 23943770-CT-C P1_Y1 10×T**
13457638-T-A 11301962-T-A **
10964224-T-C **
10940308-A-T **
10895826-C-A **
8751257-C-A 8883216-C-A **
10796672-C-A **
13466431-C-T 11310755-C-T **
10950539-C-T **
10950535-A-T **
15128201-C-G 13016288-C-G **
13447129-T-C 11291453-T-C **
10799630-C-T **
14614589-C-A 12502787-C-A **
10980257-C-T **
14558607-C-A 12446808-C-A **
17030992-CAAA-C 14919112-CAAA-C 19×A**
10801673-A-C **
10801669-T-G **
7205000-C-A 7336959-C-A **
11026904-C-T **
10764611-A-T **
2753863-C-A 2885822-C-A **
3131314-C-T 3263273-C-T **
10804028-A-C **
10804023-C-G **
10804018-C-T **
11013914-C-A **
11013913-C-A **
10799432-C-T **
10980268-T-A **
10980267-T-C **
10980252-T-C **
11026906-C-T **
11026095-T-C **
5022007-GAAA-G 5153966-GAAA-G 16×A**
7301572-C-A 7433531-C-A **
8144989-G-T 8276948-G-T **
11026061-T-A **
13620382-C-A 11464706-C-A **
8736431-T-C 8868390-T-C **
10849634-A-ACT **
17367637-C-A 15255757-C-A **
6971711-T-C 7103670-T-C **
10995863-C-A **
10682541-C-T **
8016933-C-A 8148892-C-A **
6971715-T-A 7103674-T-A **
10815306-C-A **
7240778-C-A 7372737-C-A **
9730627-C-A 9893018-C-A IR3_Prx **
18060223-C-A 15948343-C-A **
10679161-G-C **
10744822-C-A **
10961456-CA-C **
10991723-T-A **
13803335-C-A 11682629-C-A **
15210718-C-A 13098804-C-A **
10808992-C-G **
10889229-A-C **
10795761-C-A **
2690693-C-A 2822652-C-A **
21556945-C-CTT 19395059-C-CTT **
17181531-C-A 15069651-C-A **
14807836-C-A 12695907-C-A **
2708780-C-A 2840739-C-A **
7655210-TA-T 7787169-TA-T 8×A**
10973674-A-T **
10956705-G-T **
10746678-C-A **
10973678-C-A **
10679129-T-C **
10869976-C-A **
13488223-C-T 11332547-C-T **
10791212-TTTCCA-T **
13896338-C-A 11775632-C-A **
17199546-A-AT 15087666-A-AT 9×T**
10849637-A-ATTC **
22430108-C-G 20268222-C-G DYZ19 **
11022006-T-C **
3621367-G-T 3753326-G-T **
10895863-T-C **
10645921-C-A **
17632569-A-T 15520689-A-T **
10899233-C-A **
10967523-C-T **
21195767-C-A 19033881-C-A **
11022807-A-G **
16530917-C-A 14419037-C-A **
10749136-C-A **
16430083-C-A 14318203-C-A **
13486636-A-C 11330960-A-C **
19126390-C-A 17014510-C-A **
22660698-C-A 20498812-C-A **
20809530-C-A 18647644-C-A P4_Gap **
11647924-G-T **
11647910-G-A **
10865426-C-A **
10946621-T-A **
11647886-C-G **
3366998-A-G 3498957-A-G **
10827044-T-C **
15070495-G-A 12958586-G-A **
22337687-C-G 20175801-C-G DYZ19 **
15047493-C-T 12935584-C-T **
15070501-G-A 12958592-G-A **
14592592-CATT-C 12480792-CATT-C 6×ATT**
10657084-G-T **
10679129-TTCAATTCCAA-T **
15325006-TTAAA-T 13213124-TTAAA-T 7×TAAA**
20489521-C-A 18327635-C-A P5_Dst **
11022040-C-A **
11022022-A-ACTCTATGCTG **
13235485-C-A 11079809-C-A **
5625589-C-A 5757548-C-A **
10796151-C-A **
10796120-TC-T **
10691082-G-T **
16432944-C-A 14321064-C-A **
13486608-A-G 11330932-A-G **
26099788-C-T 23953641-C-T P1_Y1 **
23438812-C-A 21276926-C-A **
8611886-CAA-C 8743845-CAA-C 14×A***
11018797-C-A ***
16371118-ATT-A 14259238-ATT-A 15×T***
8550844-T-A 8682803-T-A 17×A***
16908451-TAA-T,TA 14796571-TAA-T,TA 21×A***
9449038-C-A 9611429-C-A ***
21285391-C-A 19123505-C-A ***
23393717-C-A 21231831-C-A ***
15212249-C-A 13100335-C-A ***
58972156-T-C,G 56826009-T-C,G ***
14827211-T-TA 12715278-T-TA 10×A***
10935555-T-G ***
19489453-C-CA 17377573-C-CA 11×A***
17729366-C-A 15617486-C-A ***
13488241-C-T 11332565-C-T ***
4136641-TACAC-T 4268600-TACAC-T 20×AC***
17564912-GAAAA-G 15453032-GAAAA-G 16×A***
9702867-AACAC-A,AAC 9865258-AACAC-A,AAC IR3_Prx 19×AC***
24604575-G-T 22458428-G-T P3_t2 ***
24003053-G-T 21856906-G-T ***
6891764-G-GT 7023723-G-GT 10×T***
23791072-C-A 21629186-C-A ***
13488324-C-T 11332648-C-T BY86201 ***
8549032-GTT-G 8680991-GTT-G 23×T***
13488273-C-A 11332597-C-A ***
13488328-C-G 11332652-C-G ***
13488341-C-T 11332665-C-T ***
28657098-C-A 26510951-C-A ***
22723386-CAAAA-C,CAAA 20561500-CAAAA-C,CAAA 17×A***
8843536-ATTTT-A 8975495-ATTTT-A 23×T***
17050099-C-CT 14938219-C-CT 15×T***
58977875-T-C 56831728-T-C ***
58976059-C-G 56829912-C-G ***
14766406-CTTT-C 12654475-CTTT-C 13×T***
56834779-G-A,C 4×CATTC***
18244424-T-TA 16132544-T-TA 11×A***
21572228-G-GA,GAA 19410342-G-GA,GAA 14×A***
21566094-A-G 19404208-A-G ***
6863818-C-CT 6995777-C-CT 21×T***
7434095-G-T 7566054-G-T ***
22659330-C-A 20497444-C-A ***
56851026-C-A ***
14233811-C-A 12113105-C-A ***
14232833-TCTCTTTTTTC-T 12112127-TCTCTTTTTTC-T ***
15652575-C-A 13540695-C-A ***
21690909-C-CAA 19529023-C-CAA 14×A***
14065895-G-A 11945189-G-A ***
10673891-T-A ***
13488604-G-A 11332928-G-A ***
6719441-T-TA,TAA 6851400-T-TA,TAA 14×A***
13457688-A-G,T 11302012-A-G,T ***
28661432-C-A 26515285-C-A ***
13450410-ACTCCATTCCATTCCATTCTATTCCATTCCATTCCA-A,ACTGCATTCCATTCCGTTC 11294734-ACTCCATTCCATTCCATTCTATTCCATTCCATTCCA-A,ACTGCATTCCATTCCGTTC ***
6983589-C-CTGTGTG 7115548-C-CTGTGTG 20×TG***
6792628-CAAAA-C,CA 6924587-CAAAA-C,CA 18×A***
10673899-A-G ***
7242140-C-A 7374099-C-A ***
10973586-C-A ***
10776523-A-T ***
10808618-T-C ***
7516193-C-A 7648152-C-A ***
7853303-C-A 7985262-C-A ***
15057738-AT-A,ATT 12945830-AT-A,ATT 18×T***
8672975-C-A 8804934-C-A ***
23475257-CT-C,CTT 21313371-CT-C,CTT 15×T***
13453194-C-A 11297518-C-A ***
8283971-C-T 8415930-C-T ***
8525397-G-A 8657356-G-A ***
8648015-T-C 8779974-T-C ***
10808598-T-C ***
10673897-C-G ***
19566508-C-A 17454628-C-A ***
7532276-GTATATATATATATATATATATATA-G 7664235-GTATATATATATATATATATATATA-G 28×TA***
13811076-A-ATGCAT 11690370-A-ATGCAT ***
19109802-A-G 16997922-A-G ***
18959214-CAAAAAAAAA-C,CAAAAAAAA 16847334-CAAAAAAAAA-C,CAAAAAAAA 27×A***
16599739-T-TA 14487859-T-TA 10×A***
18568151-A-G 16456271-A-G ***
15686997-C-A 13575117-C-A ***
17568501-C-A 15456621-C-A ***
15735197-C-A 13623317-C-A ***
10801693-A-C ***
17461799-A-G 15349919-A-G ***
2773585-G-A 2905544-G-A ***
9458709-T-C 9621100-T-C ***
16828345-C-A 14716465-C-A ***
13478237-C-A 11322561-C-A ***
14825679-C-A 12713746-C-A ***
16365135-A-AG 14253255-A-AG 9×ATAG***
7823962-C-CA 7955921-C-CA 9×A***
2888774-G-T 3020733-G-T ***
16218088-C-A 14106208-C-A ***
10673916-T-A ***
16174022-C-A 14062142-C-A ***
10973592-C-T ***
15921530-C-A 13809650-C-A ***
15557033-CAAAAAAAA-C,CAAAAAAA 13445153-CAAAAAAAA-C,CAAAAAAA 18×A***
19451856-C-A 17339976-C-A ***
15281078-C-A 13169177-C-A ***
2665141-C-CAAA 2797100-C-CAAA 19×A***
10935573-A-T ***
18106353-G-GTTT 15994473-G-GTTT 15×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 92257898691473944807328354
Used in age calculations898691473944807328354
Counts of SNPs1814
Variant counts last updated 2018-11-18 00:01:37.



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