O'Donoghue
BigY3: 119130, BigY2: 119130Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY3 119130 | BigY2 119130 |
---|---|---|---|---|---|---|---|---|
hg19:Y:20568537-C-CA hg38:Y:18406651-C-CA | P5_Dst | 27×A | A* | |||||
hg19:Y:20506385-G-A hg38:Y:18344499-G-A | P5_Dst | A* | ||||||
hg19:Y:20506394-G-C hg38:Y:18344508-G-C | P5_Dst | A* | ||||||
hg19:Y:5646216-T-C hg38:Y:5778175-T-C | FT364713 | + | ||||||
hg19:Y:14755677-C-A hg38:Y:12643746-C-A | FT362064 | Y | Y | + | ||||
hg19:Y:25885855-G-GAAA hg38:Y:23739708-G-GAAA | P1_Y1 | ** | ||||||
hg19:Y:14073653-TTAAATAAA-T hg38:Y:11952947-TTAAATAAA-T | BY591 | 9×TAAA | ** | |||||
hg19:Y:6421452-T-C hg38:Y:6553411-T-C | ** | |||||||
hg19:Y:8126299-TTTTTA-T hg38:Y:8258258-TTTTTA-T | 9×TTTTA | ** | ||||||
hg19:Y:26120198-C-T hg38:Y:23974051-C-T | P1_Y1 | ** | ||||||
hg19:Y:7082680-C-A hg38:Y:7214639-C-A | ** | |||||||
hg19:Y:58981500-TTCTATTCCACTCCACTCCACTCCAGTACATTCCAC-T hg38:Y:56835353-TTCTATTCCACTCCACTCCACTCCAGTACATTCCAC-T | ** | |||||||
hg19:Y:19043027-C-A hg38:Y:16931147-C-A | ** | |||||||
hg19:Y:28370015-TAG-T hg38:Y:26223868-TAG-T | P1_gr2 | 16×AG | ** | |||||
hg19:Y:25885856-G-GA hg38:Y:23739709-G-GA | P1_Y1 | ** | ||||||
hg19:Y:58838651-T-A hg38:Y:56752220-A-T | ** | |||||||
hg19:Y:17605055-C-A hg38:Y:15493175-C-A | ** | |||||||
hg19:Y:58840841-G-A hg38:Y:56750030-C-T | ** | |||||||
hg19:Y:13859380-AC-A hg38:Y:11738674-AC-A | DYZ17 | ** | ||||||
hg19:Y:21698309-T-TA hg38:Y:19536423-T-TA | 24×A | ** | ||||||
hg19:Y:17684387-T-G hg38:Y:15572507-T-G | ** | |||||||
hg19:Y:20993598-CAAA-C hg38:Y:18831712-CAAA-C | P4_Dst | 17×A | ** | |||||
hg38:Y:10967521-T-C | ** | |||||||
hg19:Y:9605324-TG-T hg38:Y:9767715-TG-T | IR3_Prx | ** | ||||||
hg19:Y:13859375-G-GA hg38:Y:11738669-G-GA | DYZ17 | ** | ||||||
hg38:Y:10762615-C-A | ** | |||||||
hg38:Y:10762617-T-C | ** | |||||||
hg38:Y:10762628-T-A | FGC81790 | ** | ||||||
hg38:Y:10762628-TCATTC-T | ** | |||||||
hg19:Y:7704800-C-A hg38:Y:7836759-C-A | ** | |||||||
hg38:Y:56752224-T-C | ** | |||||||
hg38:Y:10754749-C-T | ** | |||||||
hg38:Y:10754740-C-T | ** | |||||||
hg19:Y:6652395-C-A hg38:Y:6784354-C-A | ** | |||||||
hg38:Y:11030784-T-TTCAGC | ** | |||||||
hg38:Y:10887309-T-A | ** | |||||||
hg19:Y:23432759-C-A hg38:Y:21270873-C-A | ** | |||||||
hg38:Y:10990007-T-A | ** | |||||||
hg38:Y:10990013-T-C | ** | |||||||
hg38:Y:10990020-C-A | FT219812 | ** | ||||||
hg38:Y:10990026-C-T | ** | |||||||
hg38:Y:10990033-G-T | FT439408 | ** | ||||||
hg38:Y:10990038-T-C | ** | |||||||
hg38:Y:10990045-C-A | ** | |||||||
hg38:Y:10990052-GTTCCT-A | ** | |||||||
hg38:Y:10754727-T-C | ** | |||||||
hg38:Y:10659507-T-C | ** | |||||||
hg19:Y:21495653-C-A hg38:Y:19333767-C-A | ** | |||||||
hg19:Y:14245163-C-A hg38:Y:12124457-C-A | ** | |||||||
hg38:Y:10663437-C-T | ** | |||||||
hg38:Y:10762639-T-A | ** | |||||||
hg38:Y:10752506-T-C | ** | |||||||
hg19:Y:23310606-C-A hg38:Y:21148720-C-A | ** | |||||||
hg19:Y:21138692-C-A hg38:Y:18976806-C-A | ** | |||||||
hg19:Y:8153977-C-A hg38:Y:8285936-C-A | ** | |||||||
hg19:Y:6756906-C-A hg38:Y:6888865-C-A | ** | |||||||
hg38:Y:10835569-G-T | ** | |||||||
hg19:Y:15971773-C-T hg38:Y:13859893-C-T | ** | |||||||
hg19:Y:28797805-G-GTGGAC hg38:Y:26651658-G-GTGGAC | ** | |||||||
hg38:Y:10940340-C-CCATTT | ** | |||||||
hg38:Y:10819195-C-A | ** | |||||||
hg38:Y:10758298-C-A | ** | |||||||
hg38:Y:10921508-T-C | ** | |||||||
hg38:Y:10921511-C-A | ** | |||||||
hg38:Y:10921535-CT-C | ** | |||||||
hg38:Y:10921542-A-C | ** | |||||||
hg38:Y:10921550-C-A | ** | |||||||
hg19:Y:13934813-C-A hg38:Y:11814107-C-A | ** | |||||||
hg19:Y:15107572-C-A hg38:Y:12995659-C-A | ** | |||||||
hg38:Y:10833030-T-A | ** | |||||||
hg38:Y:10833103-C-T | ** | |||||||
hg38:Y:10943946-C-A | ** | |||||||
hg19:Y:21556971-C-A hg38:Y:19395085-C-A | ** | |||||||
hg19:Y:21318219-C-A hg38:Y:19156333-C-A | ** | |||||||
hg19:Y:16272023-G-T hg38:Y:14160143-G-T | ** | |||||||
hg19:Y:16528250-C-A hg38:Y:14416370-C-A | ** | |||||||
hg19:Y:24634099-G-T hg38:Y:22487952-G-T | P3_t2 | ** | ||||||
hg19:Y:13696288-A-T hg38:Y:11540612-A-T | DYZ17 | ** | ||||||
hg19:Y:20428508-T-G hg38:Y:18266622-T-G | P5_Dst | ** | ||||||
hg19:Y:19345933-C-A hg38:Y:17234053-C-A | ** | |||||||
hg38:Y:11645796-C-A | FT449877 | DYZ17 | ** | |||||
hg38:Y:10663417-C-T | ** | |||||||
hg38:Y:10659524-T-C | ** | |||||||
hg38:Y:11018265-T-C | ** | |||||||
hg38:Y:10891989-A-T | ** | |||||||
hg38:Y:10835493-A-T | ** | |||||||
hg19:Y:8835280-C-A hg38:Y:8967239-C-A | ** | |||||||
hg19:Y:9639158-G-T hg38:Y:9801549-G-T | IR3_Prx | ** | ||||||
hg38:Y:10887289-T-G | ** | |||||||
hg38:Y:10780842-A-T | ** | |||||||
hg38:Y:10780847-C-G | ** | |||||||
hg38:Y:10780855-A-C | ** | |||||||
hg38:Y:10780869-T-C | ** | |||||||
hg38:Y:10780879-G-C | ** | |||||||
hg38:Y:10780889-C-T | ** | |||||||
hg19:Y:6090885-C-A hg38:Y:6222844-C-A | ** | |||||||
hg38:Y:10780834-C-T | ** | |||||||
hg38:Y:10677972-T-C | ** | |||||||
hg19:Y:14098733-T-A hg38:Y:11978027-T-A | 10×A | ** | ||||||
hg38:Y:10795081-C-T | ** | |||||||
hg38:Y:10844171-T-A | ** | |||||||
hg19:Y:21090215-C-A hg38:Y:18928329-C-A | ** | |||||||
hg38:Y:10887276-G-A | ** | |||||||
hg38:Y:10887303-A-T | ** | |||||||
hg38:Y:9056902-C-A | ** | |||||||
hg38:Y:10900178-C-A | FT435924 | ** | ||||||
hg19:Y:24291376-A-AC hg38:Y:22145229-A-AC | P3_t1 | ** | ||||||
hg19:Y:21361920-C-A hg38:Y:19200034-C-A | ** | |||||||
hg19:Y:13963926-C-A hg38:Y:11843220-C-A | ** | |||||||
hg19:Y:16666079-ATTTTTTTT-A hg38:Y:14554199-ATTTTTTTT-A | 25×T | ** | ||||||
hg19:Y:13301849-C-A hg38:Y:11146173-C-A | ** | |||||||
hg19:Y:15882070-G-T hg38:Y:13770190-G-T | ** | |||||||
hg19:Y:25970735-TC-T hg38:Y:23824588-TC-T | P1_Y1 | ** | ||||||
hg19:Y:20579118-T-TCA hg38:Y:18417232-T-TCA | P5_Dst | ** | ||||||
hg19:Y:8563745-CTTTTT-C hg38:Y:8695704-CTTTTT-C | 21×T | ** | ||||||
hg19:Y:15947951-C-A hg38:Y:13836071-C-A | 19×T | ** | ||||||
hg19:Y:26123866-G-T hg38:Y:23977719-G-T | P1_Y1 | ** | ||||||
hg19:Y:19673369-C-A hg38:Y:17561489-C-A | P5_Prx | ** | ||||||
hg19:Y:20107985-AT-A hg38:Y:17996105-AT-A | P5_Dst | ** | ||||||
hg19:Y:5335870-C-A hg38:Y:5467829-C-A | ** | |||||||
hg38:Y:10958804-T-C | ** | |||||||
hg38:Y:10659518-A-T | ** | |||||||
hg38:Y:10958811-C-T | ** | |||||||
hg19:Y:24071330-C-A hg38:Y:21925183-C-A | P3_b1 | ** | ||||||
hg38:Y:10659529-T-C | ** | |||||||
hg19:Y:17334037-T-C hg38:Y:15222157-T-C | ** | |||||||
hg19:Y:13287350-A-C hg38:Y:11131674-A-C | ** | |||||||
hg19:Y:13696249-C-G hg38:Y:11540573-C-G | DYZ17 | ** | ||||||
hg19:Y:13937439-C-A hg38:Y:11816733-C-A | ** | |||||||
hg19:Y:6037741-C-A hg38:Y:6169700-C-A | ** | |||||||
hg19:Y:7461793-C-A hg38:Y:7593752-C-A | IR1_L | ** | ||||||
hg19:Y:3876197-C-A hg38:Y:4008156-C-A | ** | |||||||
hg38:Y:9056295-C-A | ** | |||||||
hg19:Y:23009464-A-G hg38:Y:20847578-A-G | ** | |||||||
hg38:Y:10764573-T-A | ** | |||||||
hg38:Y:10884256-C-A | ** | |||||||
hg19:Y:2907074-G-T hg38:Y:3039033-G-T | ** | |||||||
hg19:Y:17795667-C-A hg38:Y:15683787-C-A | ** | |||||||
hg38:Y:21780510-C-A | ** | |||||||
hg38:Y:10986304-C-A | ** | |||||||
hg19:Y:19137536-G-T hg38:Y:17025656-G-T | ** | |||||||
hg19:Y:16581342-C-A hg38:Y:14469462-C-A | ** | |||||||
hg38:Y:10754777-TTCTATTTTAC-T | ** | |||||||
hg19:Y:17952623-C-A hg38:Y:15840743-C-A | 16×T | ** | ||||||
hg38:Y:10952540-C-T | ** | |||||||
hg38:Y:10952541-A-G | ** | |||||||
hg38:Y:10959026-C-A | ** | |||||||
hg19:Y:3852290-C-A hg38:Y:3984249-C-A | ** | |||||||
hg19:Y:15158693-C-A hg38:Y:13046779-C-A | ** | |||||||
hg38:Y:10971856-G-T | ** | |||||||
hg19:Y:16520870-G-T hg38:Y:14408990-G-T | ** | |||||||
hg38:Y:10750986-T-G | ** | |||||||
hg19:Y:15076239-C-A hg38:Y:12964329-C-A | ** | |||||||
hg19:Y:21043871-C-A hg38:Y:18881985-C-A | ** | |||||||
hg19:Y:8702833-C-A hg38:Y:8834792-C-A | ** | |||||||
hg38:Y:10971827-C-A | FT438660 | ** | ||||||
hg38:Y:10818276-C-A | ** | |||||||
hg19:Y:21540948-C-A hg38:Y:19379062-C-A | ** | |||||||
hg38:Y:10833077-G-C | ** | |||||||
hg38:Y:10841070-C-A | ** | |||||||
hg38:Y:10924775-C-A | ** | |||||||
hg19:Y:4900076-C-A hg38:Y:5032035-C-A | ** | |||||||
hg19:Y:7705071-C-A hg38:Y:7837030-C-A | ** | |||||||
hg38:Y:56752260-C-A | ** | |||||||
hg38:Y:10659544-T-G | ** | |||||||
hg38:Y:10659578-T-A | ** | |||||||
hg19:Y:27540971-A-C hg38:Y:25394824-A-C | P1_Y2 | ** | ||||||
hg19:Y:14825148-C-A hg38:Y:12713215-C-A | ** | |||||||
hg38:Y:10992330-C-A | ** | |||||||
hg19:Y:21182369-C-A hg38:Y:19020483-C-A | ** | |||||||
hg38:Y:11673775-C-A | DYZ17 | ** | ||||||
hg19:Y:7124638-C-A hg38:Y:7256597-C-A | ** | |||||||
hg38:Y:10841276-C-A | ** | |||||||
hg19:Y:16424749-G-T hg38:Y:14312869-G-T | ** | |||||||
hg19:Y:21362787-C-A hg38:Y:19200901-C-A | ** | |||||||
hg38:Y:56752212-C-G | ** | |||||||
hg19:Y:13453338-C-A hg38:Y:11297662-C-A | ** | |||||||
hg19:Y:27540965-CAG-C hg38:Y:25394818-CAG-C | P1_Y2 | ** | ||||||
hg19:Y:2773532-G-T hg38:Y:2905491-G-T | ** | |||||||
hg38:Y:10949313-C-A | ** | |||||||
hg38:Y:10894473-T-C | ** | |||||||
hg38:Y:10894493-G-A | ** | |||||||
hg38:Y:10986044-C-A | ** | |||||||
hg19:Y:22264301-T-A hg38:Y:20102415-T-A | DYZ19 | ** | ||||||
hg38:Y:10887311-G-A | ** | |||||||
hg19:Y:22965075-C-A hg38:Y:20803189-C-A | ** | |||||||
hg38:Y:10887280-C-T | ** | |||||||
hg19:Y:16427647-C-A hg38:Y:14315767-C-A | ** | |||||||
hg38:Y:10752762-C-A | ** | |||||||
hg38:Y:10958833-T-A | ** | |||||||
hg19:Y:28513872-C-A hg38:Y:26367725-C-A | ** | |||||||
hg19:Y:2843969-G-T hg38:Y:2975928-G-T | ** | |||||||
hg19:Y:2885441-C-A hg38:Y:3017400-C-A | ** | |||||||
hg19:Y:2979523-T-G hg38:Y:3111482-T-G | ** | |||||||
hg19:Y:3134516-C-A hg38:Y:3266475-C-A | ** | |||||||
hg19:Y:3285967-C-A hg38:Y:3417926-C-A | ** | |||||||
hg19:Y:3814846-C-A hg38:Y:3946805-C-A | ** | |||||||
hg19:Y:3849091-C-G hg38:Y:3981050-C-G | ** | |||||||
hg19:Y:4181753-T-G hg38:Y:4313712-T-G | ** | |||||||
hg19:Y:4346749-T-C hg38:Y:4478708-T-C | ** | |||||||
hg19:Y:4348242-G-T hg38:Y:4480201-G-T | ** | |||||||
hg19:Y:4417277-C-A hg38:Y:4549236-C-A | ** | |||||||
hg19:Y:4569838-A-T hg38:Y:4701797-A-T | ** | |||||||
hg19:Y:4898665-G-T hg38:Y:5030624-G-T | ** | |||||||
hg19:Y:4928760-A-C hg38:Y:5060719-A-C | ** | |||||||
hg19:Y:5060573-T-C hg38:Y:5192532-T-C | FT241512 | ** | ** | |||||
hg19:Y:5393360-AGCG-A hg38:Y:5525319-AGCG-A | ** | |||||||
hg19:Y:5577240-C-T hg38:Y:5709199-C-T | ** | |||||||
hg19:Y:5605476-G-T hg38:Y:5737435-G-T | ** | |||||||
hg19:Y:5605496-G-T hg38:Y:5737455-G-T | ** | |||||||
hg19:Y:5656220-C-A hg38:Y:5788179-C-A | ** | |||||||
hg19:Y:5685609-C-A hg38:Y:5817568-C-A | ** | |||||||
hg19:Y:6137864-C-T hg38:Y:6269823-C-T | IR3_Dst | ** | ||||||
hg19:Y:6206141-A-G hg38:Y:6338100-A-G | IR3_Dst | ** | ||||||
hg19:Y:6210401-G-T hg38:Y:6342360-G-T | IR3_Dst | ** | ||||||
hg19:Y:6648023-C-A hg38:Y:6779982-C-A | ** | |||||||
hg19:Y:6674561-T-G hg38:Y:6806520-T-G | ** | |||||||
hg19:Y:6756894-G-T hg38:Y:6888853-G-T | ** | |||||||
hg19:Y:7093138-A-G hg38:Y:7225097-A-G | ** | |||||||
hg19:Y:7177023-A-G hg38:Y:7308982-A-G | ** | |||||||
hg19:Y:7243210-G-T hg38:Y:7375169-G-T | ** | |||||||
hg19:Y:7316557-T-C hg38:Y:7448516-T-C | ** | |||||||
hg19:Y:7336909-C-G hg38:Y:7468868-C-G | ** | |||||||
hg19:Y:7352997-G-T hg38:Y:7484956-G-T | ** | |||||||
hg19:Y:7536577-C-A hg38:Y:7668536-C-A | ** | |||||||
hg19:Y:7704965-A-G hg38:Y:7836924-A-G | ** | |||||||
hg19:Y:7765583-C-A hg38:Y:7897542-C-A | ** | |||||||
hg19:Y:8077942-G-T hg38:Y:8209901-G-T | ** | |||||||
hg19:Y:8452227-G-C hg38:Y:8584186-G-C | ** | |||||||
hg19:Y:8697912-G-T hg38:Y:8829871-G-T | ** | |||||||
hg19:Y:8865971-G-T hg38:Y:8997930-G-T | ** | |||||||
hg19:Y:9776105-C-A hg38:Y:9938496-C-A | ** | |||||||
hg19:Y:9967361-G-A hg38:Y:10129752-G-A | ** | |||||||
hg19:Y:9996060-G-A hg38:Y:10158451-G-A | ** | |||||||
hg38:Y:10669017-C-A | ** | |||||||
hg38:Y:10673103-C-A | ** | |||||||
hg38:Y:10673249-C-G | ** | |||||||
hg38:Y:10676783-C-A | ** | |||||||
hg38:Y:10753855-A-C | ** | |||||||
hg38:Y:10760224-C-A | ** | |||||||
hg38:Y:10761212-C-A | ** | |||||||
hg38:Y:10780674-C-A | ** | |||||||
hg38:Y:10824522-C-A | ** | |||||||
hg38:Y:10829893-G-T | ** | |||||||
hg38:Y:10835533-A-T | ** | |||||||
hg38:Y:10835542-C-A | ** | |||||||
hg38:Y:10835555-T-C | ** | |||||||
hg38:Y:10835556-GCATTT-C | ** | |||||||
hg38:Y:10835567-C-T | ** | |||||||
hg38:Y:10835571-C-A | ** | |||||||
hg38:Y:10835600-T-C | ** | |||||||
hg38:Y:10839904-C-A | ** | |||||||
hg38:Y:10844151-T-C | ** | |||||||
hg38:Y:10844208-T-A | ** | |||||||
hg38:Y:10846066-C-A | ** | |||||||
hg38:Y:10848773-C-A | ** | |||||||
hg38:Y:10882815-T-A | ** | |||||||
hg38:Y:10887331-T-G | ** | |||||||
hg38:Y:10889122-C-A | ** | |||||||
hg38:Y:10894090-C-G | ** | |||||||
hg38:Y:10894488-T-C | ** | |||||||
hg38:Y:10906566-G-T | ** | |||||||
hg38:Y:10943954-C-G | ** | |||||||
hg38:Y:10947222-C-T | ** | |||||||
hg38:Y:10953594-C-T | ** | |||||||
hg38:Y:10958767-A-G | ** | |||||||
hg38:Y:10958781-C-G | ** | |||||||
hg38:Y:10958789-T-C | ** | |||||||
hg38:Y:10958844-T-C | ** | |||||||
hg38:Y:10958845-C-G | ** | |||||||
hg38:Y:10969317-T-G | ** | |||||||
hg38:Y:10971571-C-A | ** | |||||||
hg38:Y:10975969-T-G | ** | |||||||
hg38:Y:10982698-T-G | ** | |||||||
hg38:Y:10987384-C-A | ** | |||||||
hg38:Y:10995573-C-A | ** | |||||||
hg38:Y:10997005-C-A | ** | |||||||
hg38:Y:11000952-C-A | ** | |||||||
hg38:Y:11006363-A-C | FT299845 | ** | ||||||
hg38:Y:11006794-T-G | ** | |||||||
hg38:Y:11018266-T-A | ** | |||||||
hg38:Y:11018356-G-T | ** | |||||||
hg19:Y:13582579-C-T hg38:Y:11426903-C-T | ** | |||||||
hg19:Y:13696278-G-T hg38:Y:11540602-G-T | DYZ17 | ** | ||||||
hg19:Y:13708205-T-A hg38:Y:11552529-T-A | DYZ17 | ** | ||||||
hg19:Y:13726313-A-T hg38:Y:11570637-A-T | DYZ17 | ** | ||||||
hg38:Y:11671393-A-C | DYZ17 | ** | ||||||
hg19:Y:13865921-A-C hg38:Y:11745215-A-C | DYZ17 | ** | ||||||
hg19:Y:13943500-C-A hg38:Y:11822794-C-A | ** | |||||||
hg19:Y:13943575-C-A hg38:Y:11822869-C-A | ** | |||||||
hg19:Y:14017202-G-T hg38:Y:11896496-G-T | ** | |||||||
hg19:Y:14200452-C-G hg38:Y:12079746-C-G | ** | |||||||
hg19:Y:14213258-C-A hg38:Y:12092552-C-A | ** | |||||||
hg19:Y:14240272-A-T hg38:Y:12119566-A-T | ** | |||||||
hg19:Y:14370813-A-G hg38:Y:12250109-A-G | ** | |||||||
hg19:Y:14419082-T-C hg38:Y:12298357-T-C | ** | |||||||
hg19:Y:14452225-C-A hg38:Y:12331498-C-A | ** | |||||||
hg19:Y:14483797-C-A hg38:Y:12363066-C-A | ** | |||||||
hg19:Y:14488394-CA-C hg38:Y:12367663-CA-C | ** | |||||||
hg19:Y:14512961-G-A hg38:Y:12401166-G-A | ** | |||||||
hg19:Y:14589293-G-T hg38:Y:12477493-G-T | ** | |||||||
hg19:Y:14656462-C-A hg38:Y:12544527-C-A | ** | |||||||
hg19:Y:14693913-C-A hg38:Y:12581979-C-A | ** | |||||||
hg19:Y:14693936-C-A hg38:Y:12582002-C-A | ** | |||||||
hg19:Y:14854353-C-A hg38:Y:12742419-C-A | ** | |||||||
hg19:Y:14884722-A-T hg38:Y:12772788-A-T | ** | |||||||
hg19:Y:15025221-C-A hg38:Y:12913309-C-A | ** | |||||||
hg19:Y:15060590-C-A hg38:Y:12948682-C-A | 8×CAA | ** | ||||||
hg19:Y:15151501-TCAAAA-T hg38:Y:13039588-TCAAAA-T | ** | |||||||
hg19:Y:15176516-C-A hg38:Y:13064602-C-A | Y30996 | ** | ||||||
hg19:Y:15251950-A-C hg38:Y:13140036-A-C | ** | |||||||
hg19:Y:15257277-G-A hg38:Y:13145361-G-A | ** | |||||||
hg19:Y:15369155-C-A hg38:Y:13257275-C-A | ** | |||||||
hg19:Y:15433135-C-A hg38:Y:13321255-C-A | ** | |||||||
hg19:Y:15622318-C-A hg38:Y:13510438-C-A | ** | |||||||
hg19:Y:15776103-G-T hg38:Y:13664223-G-T | ** | |||||||
hg19:Y:15890848-C-A hg38:Y:13778968-C-A | ** | |||||||
hg19:Y:16057046-A-G hg38:Y:13945166-A-G | ** | |||||||
hg19:Y:16084187-A-G hg38:Y:13972307-A-G | ** | |||||||
hg19:Y:16115475-C-A hg38:Y:14003595-C-A | P8_Prx | ** | ||||||
hg19:Y:16221628-C-A hg38:Y:14109748-C-A | ** | |||||||
hg19:Y:16270664-G-T hg38:Y:14158784-G-T | FGC53117 | ** | ||||||
hg19:Y:16274062-G-A hg38:Y:14162182-G-A | ** | |||||||
hg19:Y:16714660-A-C hg38:Y:14602780-A-C | ** | |||||||
hg19:Y:17038524-G-A hg38:Y:14926644-G-A | ** | |||||||
hg19:Y:17378473-C-A hg38:Y:15266593-C-A | ** | |||||||
hg19:Y:17382553-T-C hg38:Y:15270673-T-C | ** | |||||||
hg19:Y:17602455-C-A hg38:Y:15490575-C-A | ** | |||||||
hg19:Y:17684345-G-C hg38:Y:15572465-G-C | ** | |||||||
hg19:Y:17684359-T-C hg38:Y:15572479-T-C | ** | |||||||
hg19:Y:17684366-A-G hg38:Y:15572486-A-G | ** | |||||||
hg19:Y:17684371-T-A hg38:Y:15572491-T-A | ** | |||||||
hg19:Y:17684394-T-C hg38:Y:15572514-T-C | ** | |||||||
hg19:Y:17684405-C-T hg38:Y:15572525-C-T | ** | |||||||
hg19:Y:17684412-C-T hg38:Y:15572532-C-T | ** | |||||||
hg19:Y:17770658-C-T hg38:Y:15658778-C-T | ** | |||||||
hg19:Y:18218912-G-A hg38:Y:16107032-G-A | ** | |||||||
hg19:Y:18354148-G-T hg38:Y:16242268-G-T | P6_Prx | ** | ||||||
hg19:Y:18810892-G-T hg38:Y:16699012-G-T | ** | |||||||
hg19:Y:19058082-C-A hg38:Y:16946202-C-A | ** | |||||||
hg19:Y:19107317-T-A hg38:Y:16995437-T-A | ** | |||||||
hg19:Y:19110041-C-A hg38:Y:16998161-C-A | ** | |||||||
hg19:Y:19617723-G-T hg38:Y:17505843-G-T | P5_Prx | ** | ||||||
hg19:Y:19617771-G-T hg38:Y:17505891-G-T | P5_Prx | ** | ||||||
hg19:Y:19752417-T-A hg38:Y:17640537-T-A | P5_Prx | ** | ||||||
hg19:Y:20326040-T-A hg38:Y:18164154-T-A | P5_Dst | ** | ||||||
hg19:Y:20352314-A-ACC hg38:Y:18190428-A-ACC | P5_Dst | ** | ||||||
hg19:Y:20579140-G-A hg38:Y:18417254-G-A | P5_Dst | ** | ||||||
hg19:Y:20579380-C-A hg38:Y:18417494-C-A | P5_Dst | ** | ||||||
hg19:Y:20614058-C-A hg38:Y:18452172-C-A | P4_Prx | ** | ||||||
hg19:Y:20667700-A-T hg38:Y:18505814-A-T | P4_Prx | ** | ||||||
hg19:Y:20932937-A-T hg38:Y:18771051-A-T | P4_Dst | ** | ||||||
hg19:Y:20932983-C-G hg38:Y:18771097-C-G | P4_Dst | ** | ||||||
hg19:Y:21108140-C-A hg38:Y:18946254-C-A | ** | |||||||
hg19:Y:21202438-C-A hg38:Y:19040552-C-A | ** | |||||||
hg19:Y:21268926-G-T hg38:Y:19107040-G-T | ** | |||||||
hg19:Y:21336378-G-A hg38:Y:19174492-G-A | ** | |||||||
hg19:Y:21443961-T-C hg38:Y:19282075-T-C | ** | |||||||
hg19:Y:21489203-C-A hg38:Y:19327317-C-A | ** | |||||||
hg19:Y:21682332-C-A hg38:Y:19520446-C-A | ** | |||||||
hg19:Y:21737692-T-G hg38:Y:19575806-T-G | ** | |||||||
hg19:Y:21863894-G-A hg38:Y:19702008-G-A | ** | |||||||
hg19:Y:21987244-C-A hg38:Y:19825358-C-A | ** | |||||||
hg19:Y:22021737-T-C hg38:Y:19859851-T-C | ** | |||||||
hg19:Y:22124519-C-A hg38:Y:19962633-C-A | ** | |||||||
hg19:Y:22200391-C-A hg38:Y:20038505-C-A | ** | |||||||
hg19:Y:22210542-A-G hg38:Y:20048656-A-G | ** | |||||||
hg19:Y:22765515-A-T hg38:Y:20603629-A-T | ** | |||||||
hg19:Y:22893475-C-T hg38:Y:20731589-C-T | FT171127 | ** | ||||||
hg19:Y:22893478-C-T hg38:Y:20731592-C-T | ** | |||||||
hg19:Y:22893479-A-G hg38:Y:20731593-A-G | ** | |||||||
hg19:Y:22896082-C-A hg38:Y:20734196-C-A | ** | |||||||
hg19:Y:22972944-C-A hg38:Y:20811058-C-A | ** | |||||||
hg19:Y:23262781-A-G hg38:Y:21100895-A-G | ** | |||||||
hg19:Y:23262786-A-C hg38:Y:21100900-A-C | ** | |||||||
hg19:Y:23415306-ATGTATG-A hg38:Y:21253420-ATGTATG-A | ** | |||||||
hg19:Y:23447014-G-A hg38:Y:21285128-G-A | ** | |||||||
hg19:Y:23590916-G-A hg38:Y:21429030-G-A | ** | |||||||
hg19:Y:23609509-C-A hg38:Y:21447623-C-A | ** | |||||||
hg19:Y:23727089-T-G hg38:Y:21565203-T-G | ** | |||||||
hg19:Y:24247494-T-A hg38:Y:22101347-T-A | P3_b1 | ** | ||||||
hg19:Y:24363967-T-A hg38:Y:22217820-T-A | ** | |||||||
hg19:Y:24434698-G-T hg38:Y:22288551-G-T | ** | |||||||
hg19:Y:26068766-T-G hg38:Y:23922619-T-G | P1_Y1 | ** | ||||||
hg19:Y:27633705-C-A hg38:Y:25487558-C-A | P1_Y2 | ** | ||||||
hg19:Y:28551100-G-T hg38:Y:26404953-G-T | ** | |||||||
hg19:Y:28555047-T-G hg38:Y:26408900-T-G | ** | |||||||
hg19:Y:28555049-T-G hg38:Y:26408902-T-G | ** | |||||||
hg19:Y:28568002-G-T hg38:Y:26421855-G-T | ** | |||||||
hg19:Y:28622325-G-T hg38:Y:26476178-G-T | ** | |||||||
hg19:Y:28626026-C-A hg38:Y:26479879-C-A | ** | |||||||
hg19:Y:28643174-G-T hg38:Y:26497027-G-T | ** | |||||||
hg19:Y:28667606-C-T hg38:Y:26521459-C-T | ** | |||||||
hg19:Y:28815206-G-C hg38:Y:26669059-G-C | ** | |||||||
hg38:Y:56752207-G-C | ** | |||||||
hg38:Y:56838740-G-T | ** | |||||||
hg38:Y:56839119-C-A | ** | |||||||
hg38:Y:56844057-C-T | ** | |||||||
hg19:Y:24446972-A-G hg38:Y:22300825-A-G | ** | |||||||
hg19:Y:4277201-CTTTTT-C hg38:Y:4409160-CTTTTT-C | 20×T | ** | ||||||
hg19:Y:17387253-T-C hg38:Y:15275373-T-C | ** | |||||||
hg19:Y:17387258-T-A hg38:Y:15275378-T-A | ** | |||||||
hg19:Y:4366446-T-C hg38:Y:4498405-T-C | ** | |||||||
hg19:Y:4718486-C-T hg38:Y:4850445-C-T | ** | |||||||
hg19:Y:5523917-C-CTT hg38:Y:5655876-C-CTT | 24×T | ** | ||||||
hg19:Y:6206305-T-C hg38:Y:6338264-T-C | IR3_Dst | ** | ||||||
hg19:Y:6821949-C-A hg38:Y:6953908-C-A | ** | |||||||
hg19:Y:7437393-G-A hg38:Y:7569352-G-A | ** | |||||||
hg19:Y:9175030-G-C hg38:Y:9337421-G-C | ** | |||||||
hg19:Y:13353612-A-G hg38:Y:11197936-A-G | ** | |||||||
hg19:Y:13453519-C-A hg38:Y:11297843-C-A | ** | |||||||
hg19:Y:13537512-T-A hg38:Y:11381836-T-A | ** | |||||||
hg19:Y:14025518-C-T hg38:Y:11904812-C-T | FTB33045 | ** | ||||||
hg19:Y:14261408-G-A hg38:Y:12140702-G-A | ** | |||||||
hg19:Y:18540833-A-G hg38:Y:16428953-A-G | ** | |||||||
hg19:Y:18970077-GGCC-G hg38:Y:16858197-GGCC-G | ** | |||||||
hg19:Y:23051610-T-C hg38:Y:20889724-T-C | ** | |||||||
hg19:Y:28513381-T-A hg38:Y:26367234-T-A | ** | |||||||
hg19:Y:18833473-AT-A hg38:Y:16721593-AT-A | 9×T | *** | ||||||
hg19:Y:22037365-C-CA hg38:Y:19875479-C-CA | 10×A | *** | ||||||
hg19:Y:5486876-C-A hg38:Y:5618835-C-A | 21×A | *** | ||||||
hg19:Y:19274889-A-G hg38:Y:17163009-A-G | PF4979 | *** | ||||||
hg19:Y:8666723-GTTTTT-G hg38:Y:8798682-GTTTTT-G | 25×T | *** | ||||||
hg19:Y:13258166-G-GT hg38:Y:11102490-G-GT | 10×T | *** | ||||||
hg19:Y:13468203-G-A hg38:Y:11312527-G-A | *** | |||||||
hg19:Y:17192852-ATG-A hg38:Y:15080972-ATG-A | 8×TG | *** | ||||||
hg19:Y:13488971-C-A hg38:Y:11333295-C-A | *** | |||||||
hg38:Y:10776049-C-A | *** | |||||||
hg19:Y:18191872-G-T hg38:Y:16079992-G-T | *** | |||||||
hg19:Y:15912028-C-A hg38:Y:13800148-C-A | FT134101 | *** | ||||||
hg19:Y:16354551-C-A hg38:Y:14242671-C-A | *** | |||||||
hg38:Y:56828936-TTCCATTCCATTCCA-T,TTCCATTCCATGCTA | *** | |||||||
hg38:Y:10673885-T-A,C | *** | |||||||
hg38:Y:10776045-C-T | *** | |||||||
hg38:Y:10825301-A-T | *** | |||||||
hg38:Y:10825315-C-A | *** | |||||||
hg19:Y:22103776-CAA-C hg38:Y:19941890-CAA-C | 10×A | *** | ||||||
hg38:Y:11643704-G-T | DYZ17 | *** | ||||||
hg19:Y:16863543-ATTT-A hg38:Y:14751663-ATTT-A | 14×T | *** | ||||||
hg19:Y:23258041-T-TA hg38:Y:21096155-T-TA | 9×A | *** | ||||||
hg38:Y:10764579-C-G | *** | |||||||
hg38:Y:10926601-C-T | *** | |||||||
hg19:Y:19489453-CA-C,CAA hg38:Y:17377573-CA-C,CAA | 11×A | *** | ||||||
hg19:Y:13488953-C-A hg38:Y:11333277-C-A | *** | |||||||
hg19:Y:2668083-C-A hg38:Y:2800042-C-A | *** | |||||||
hg19:Y:13468238-C-A hg38:Y:11312562-C-A | *** | |||||||
hg19:Y:13488546-C-A hg38:Y:11332870-C-A | *** | |||||||
hg19:Y:7430412-C-A hg38:Y:7562371-C-A | *** | |||||||
hg19:Y:23633371-CTT-C,CT hg38:Y:21471485-CTT-C,CT | 21×T | *** | ||||||
hg19:Y:8973152-C-A hg38:Y:9135543-C-A | *** | |||||||
hg19:Y:7534406-GTT-G hg38:Y:7666365-GTT-G | 19×T | *** | ||||||
hg19:Y:3358529-ATTT-A hg38:Y:3490488-ATTT-A | 18×T | *** | ||||||
hg19:Y:8575956-ATTTTT-A hg38:Y:8707915-ATTTTT-A | 28×T | *** | ||||||
hg19:Y:18793553-G-T hg38:Y:16681673-G-T | *** | |||||||
hg19:Y:3612669-CAA-C hg38:Y:3744628-CAA-C | 13×A | *** | ||||||
hg19:Y:22068840-C-A hg38:Y:19906954-C-A | *** | |||||||
hg19:Y:22037415-T-A hg38:Y:19875529-T-A | 10×A | *** | ||||||
hg19:Y:5186898-C-A hg38:Y:5318857-C-A | *** | |||||||
hg38:Y:10962848-C-A | *** | |||||||
hg19:Y:14725821-T-. hg38:Y:12613889-A-T | *** | |||||||
hg19:Y:8807649-C-A hg38:Y:8939608-C-A | *** | |||||||
hg38:Y:10652328-T-G | *** | |||||||
hg38:Y:10964661-C-A | *** | |||||||
hg19:Y:15123941-C-A hg38:Y:13012028-C-A | *** | |||||||
hg38:Y:10770548-T-A | *** | |||||||
hg19:Y:6401496-T-C hg38:Y:6533455-T-C | *** | |||||||
hg19:Y:19103880-GTT-G hg38:Y:16992000-GTT-G | 13×T | *** | ||||||
hg19:Y:18978792-C-A hg38:Y:16866912-C-A | *** | |||||||
hg38:Y:10821848-ACTCCG-A,ACTCCA | *** | |||||||
hg38:Y:10764596-A-ATACCG | *** | |||||||
hg38:Y:10896389-A-C | *** | |||||||
hg19:Y:15726360-C-A hg38:Y:13614480-C-A | *** | |||||||
hg19:Y:17038618-C-A hg38:Y:14926738-C-A | *** | |||||||
hg19:Y:8660550-CAAAAA-C hg38:Y:8792509-CAAAAA-C | 18×A | *** | ||||||
hg38:Y:56845845-C-T | *** | |||||||
hg19:Y:6698804-C-A hg38:Y:6830763-C-A | *** | |||||||
hg19:Y:7869633-C-A hg38:Y:8001592-C-A | *** | |||||||
hg19:Y:8665841-C-A hg38:Y:8797800-C-A | *** | |||||||
hg19:Y:9407105-C-A hg38:Y:9569496-C-A | FTA4711 | *** | ||||||
hg19:Y:9765466-C-A hg38:Y:9927857-C-A | *** | |||||||
hg38:Y:10671469-C-A | *** | |||||||
hg38:Y:10787596-C-A | *** | |||||||
hg38:Y:10901416-C-A | *** | |||||||
hg38:Y:10931383-C-A | *** | |||||||
hg19:Y:13215831-AG-A hg38:Y:11060155-AG-A | *** | |||||||
hg19:Y:13450429-TATTCCATTCCATTCCATTCCATTCCATTCCATTC-T hg38:Y:11294753-TATTCCATTCCATTCCATTCCATTCCATTCCATTC-T | 10×ATTCC | *** | ||||||
hg19:Y:14101960-C-A hg38:Y:11981254-C-A | *** | |||||||
hg19:Y:14339547-C-A hg38:Y:12218842-C-A | *** | |||||||
hg19:Y:14349455-C-A hg38:Y:12228750-C-A | *** | |||||||
hg19:Y:14430989-C-A hg38:Y:12310262-C-A | *** | |||||||
hg19:Y:14471469-CTTTTT-C,CTTTT hg38:Y:12350738-CTTTTT-C,CTTTT | 19×T | *** | ||||||
hg19:Y:14557513-G-T hg38:Y:12445714-G-T | *** | |||||||
hg19:Y:14836698-C-A hg38:Y:12724765-C-A | *** | |||||||
hg19:Y:15372552-C-A hg38:Y:13260672-C-A | *** | |||||||
hg19:Y:15842405-C-A hg38:Y:13730525-C-A | *** | |||||||
hg19:Y:16481171-C-A hg38:Y:14369291-C-A | *** | |||||||
hg19:Y:16913168-C-A hg38:Y:14801288-C-A | *** | |||||||
hg19:Y:17545609-C-A hg38:Y:15433729-C-A | *** | |||||||
hg19:Y:17714153-C-A hg38:Y:15602273-C-A | *** | |||||||
hg19:Y:17869513-C-A hg38:Y:15757633-C-A | *** | |||||||
hg19:Y:19473501-C-A hg38:Y:17361621-C-A | *** | |||||||
hg19:Y:20816923-TCAAA-T hg38:Y:18655037-TCAAA-T | P4_Gap | *** | ||||||
hg19:Y:21509040-A-G hg38:Y:19347154-A-G | *** | |||||||
hg19:Y:21907529-G-GT hg38:Y:19745643-G-GT | 9×T | *** | ||||||
hg19:Y:22162872-C-A hg38:Y:20000986-C-A | *** | |||||||
hg19:Y:22515078-C-A hg38:Y:20353192-C-A | *** | |||||||
hg19:Y:22520278-C-A hg38:Y:20358392-C-A | *** | |||||||
hg19:Y:22605337-C-A hg38:Y:20443451-C-A | *** | |||||||
hg19:Y:22654889-C-A hg38:Y:20493003-C-A | *** | |||||||
hg19:Y:22929693-G-GAA hg38:Y:20767807-G-GAA | 14×A | *** | ||||||
hg19:Y:23433514-C-A hg38:Y:21271628-C-A | *** | |||||||
hg19:Y:26140047-C-A hg38:Y:23993900-C-A | P1_Y1 | *** | ||||||
hg38:Y:56835938-C-A | *** | |||||||
hg19:Y:5830217-T-C hg38:Y:5962176-T-C | *** | |||||||
hg19:Y:13457817-A-C hg38:Y:11302141-A-C | *** | |||||||
hg19:Y:13448846-TTCCACTACAG-T,TTCCACTCCAG hg38:Y:11293170-TTCCACTACAG-T,TTCCACTCCAG | *** | |||||||
hg19:Y:3050576-G-A hg38:Y:3182535-G-A | *** | |||||||
hg19:Y:3076069-CTTTTT-C,CTT hg38:Y:3208028-CTTTTT-C,CTT | 25×T | *** | ||||||
hg19:Y:13267808-G-A hg38:Y:11112132-G-A | *** | |||||||
hg19:Y:13448641-TTCCATTCCATTCCATTCCATTCCATT-C,TCCATTCCATTCCATTCCATTCCATT hg38:Y:11292965-TTCCATTCCATTCCATTCCATTCCATT-C,TCCATTCCATTCCATTCCATTCCATT | *** | |||||||
hg19:Y:3370562-C-CAT hg38:Y:3502521-C-CAT | *** | |||||||
hg19:Y:19510264-CTT-C,CT hg38:Y:17398384-CTT-C,CT | 27×T | *** | ||||||
hg19:Y:13453513-C-T hg38:Y:11297837-C-T | *** | |||||||
hg19:Y:3306266-C-T hg38:Y:3438225-C-T | *** | |||||||
hg19:Y:5084185-C-CTT hg38:Y:5216144-C-CTT | 14×T | *** | ||||||
hg19:Y:6521551-GTTTTT-G hg38:Y:6653510-GTTTTT-G | 17×T | *** | ||||||
hg19:Y:7164514-G-A hg38:Y:7296473-G-A | *** | |||||||
hg19:Y:7233120-G-A hg38:Y:7365079-G-A | *** | |||||||
hg19:Y:8058473-G-C hg38:Y:8190432-G-C | *** | |||||||
hg19:Y:9914627-G-C hg38:Y:10077018-G-C | *** | |||||||
hg19:Y:10080521-C-T hg38:Y:10242912-C-T | *** | |||||||
hg19:Y:14267633-G-A hg38:Y:12146927-G-A | *** | |||||||
hg19:Y:15192618-T-C hg38:Y:13080704-T-C | *** | |||||||
hg19:Y:16319288-A-G hg38:Y:14207408-A-G | *** | |||||||
hg19:Y:17111147-C-T hg38:Y:14999267-C-T | *** | |||||||
hg19:Y:17333373-A-G hg38:Y:15221493-A-G | *** | |||||||
hg19:Y:18407185-C-A hg38:Y:16295305-C-A | P6_Gap | *** | ||||||
hg19:Y:22192829-G-A hg38:Y:20030943-G-A | *** | |||||||
hg19:Y:22876964-TAAAA-T,TAA hg38:Y:20715078-TAAAA-T,TAA | 20×A | *** | ||||||
hg19:Y:22885056-G-A hg38:Y:20723170-G-A | *** | |||||||
hg19:Y:23066207-G-A hg38:Y:20904321-G-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 119130 | 9097370 | 7427426 | 7351054 |
Kit: 119130 | 14779291 | 9280174 | 8231209 |
Used in age calculations | 14779291 | 9280174 | 8231209 |
Counts of SNPs | 1 | 1 |
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