Tree Position

R-U106/S21 > Z2265 > Z18 > ZZ61 > DF95 > Y16119 > Y15995 > ZP124 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
6684971-CA-C 6816930-CA-C +
8662768-T-C 8794727-T-C FGC72161 YY+
2694773-T-TA 2826732-T-TA +
16612257-T-A 14500377-T-A FGC72164 YY*
19028635-CA-C 16916755-CA-C *
22852339-T-C 20690453-T-C **
15297284-ATTTTTT-A 13185383-ATTTTTT-A 27×T**
22827390-A-G 20665504-A-G **
15037773-AAG-A 12925863-AAG-A **
21757731-A-G 19595845-A-G **
7890303-C-A 8022262-C-A **
16617679-C-T 14505799-C-T FT261077 **
25273777-A-T 23127630-A-T P2_r1 ***
25259762-T-A 23113615-T-A P2_r1 ***
25524674-A-T 23378527-A-T P1_gr1 ***
25551967-A-T 23405820-A-T P1_gr1 ***
25617769-T-G 23471622-T-G P1_gr1 ***
25736714-T-G 23590567-T-G P1_b3 ***
25736715-T-A 23590568-T-A P1_b3 ***
25904612-A-G 23758465-A-G P1_Y1 ***
25994940-T-G 23848793-T-G P1_Y1 ***
25096046-C-G 22949899-C-G g1 ***
58883026-G-T 56707845-C-A ***
26299279-A-G 24153132-A-G P1_Y1 ***
26010346-G-C 23864199-G-C P1_Y1 ***
26098892-G-C 23952745-G-C P1_Y1 ***
26299300-C-A 24153153-C-A P1_Y1 ***
26310610-A-C 24164463-A-C P1_Y1 ***
26344653-T-C 24198506-T-C P1_Y1 ***
26354238-A-G 24208091-A-G P1_Y1 ***
26354312-T-A 24208165-T-A P1_Y1 ***
26422285-T-G 24276138-T-G P1_Y1 ***
26494618-C-T 24348471-C-T P1_Y1 ***
26501412-A-G 24355265-A-G P1_Y1 ***
26516932-T-G 24370785-T-G P1_Y1 ***
26570250-C-G 24424103-C-G P1_g2 ***
26699150-G-A 24553003-G-A FGC78802 P1_g2 ***
26707988-A-G 24561841-A-G P1_g2 ***
25093553-C-T 22947406-C-T g1 ***
24303578-T-C 22157431-T-C P3_t1 ***
24961841-C-A 22815694-C-A g1 ***
22342217-C-G 20180331-C-G DYZ19 ***
21146457-A-C 18984571-A-C ***
21461926-A-C 19300040-A-C ***
21583925-A-C 19422039-A-C ***
21922048-T-C 19760162-T-C ***
21979239-T-C 19817353-T-C ***
22235688-T-A 20073802-T-A DYZ19 ***
22267789-C-A 20105903-C-A DYZ19 ***
22267914-C-A 20106028-C-A DYZ19 ***
22311521-C-A 20149635-C-A DYZ19 ***
22311531-T-A 20149645-T-A DYZ19 ***
22312162-G-T 20150276-G-T DYZ19 ***
22341442-C-A 20179556-C-A DYZ19 ***
22433125-C-A 20271239-C-A DYZ19 ***
24942803-A-G 22796656-A-G g1 ***
22468356-T-G 20306470-T-G DYZ19 ***
22489925-A-C 20328039-A-C DYZ19 ***
23394155-T-A 21232269-T-A ***
23449847-A-C 21287961-A-C ***
23479424-T-G 21317538-T-G ***
23655008-A-G 21493122-A-G ***
24188623-A-T 22042476-A-T P3_b1 ***
24212252-G-A 22066105-G-A P3_b1 ***
24222813-C-A 22076666-C-A P3_b1 ***
24283083-G-A 22136936-G-A P3_t1 ***
24470549-T-C 22324402-T-C ***
24705951-G-T 22559804-G-T P3_b2 ***
26708001-T-G 24561854-T-G P1_g2 ***
26780878-A-G 24634731-A-G P1_g2 ***
26736433-T-C 24590286-T-C P1_g2 ***
7106989-C-CTCTG 7238948-C-CTCTG ***
58831153-C-T 56759718-G-A ***
58860531-G-C 56730340-C-G ***
58871631-G-T 56719240-C-A ***
58877964-A-T 56712907-T-A ***
58896035-T-C 56694836-A-G ***
58896094-A-G 56694777-T-C ***
58904373-G-T 56686498-C-A ***
58913243-C-A 56677628-G-T ***
4856978-TG-T 4988937-TG-T ***
6024874-GTAT-ATAC 6156833-GTAT-ATAC ***
6024883-CAC-GAT 6156842-CAC-GAT ***
6996695-AC-TCT 7128654-AC-TCT ***
8333476-CTTCT-C 8465435-CTTCT-C ***
58830004-G-C 56760867-C-G ***
9403519-CAGT-C 9565910-CAGT-C ***
9524019-G-GTATATATATA 9686410-G-GTATATATATA 21×TA***
9984621-GTT-TTA 10147012-GTT-TTA ***
13195965-CTGCG-TTGCA 11040289-CTGCG-TTGCA ***
14102299-A-ATCTC 11981593-A-ATCTC ***
14610900-C-CATAT 12499106-C-CATAT ***
16842865-T-TTA 14730985-T-TTA ***
18970320-C-CA 16858440-C-CA 28×A***
19609664-AGGGT-GGGGG 17497784-AGGGT-GGGGG P5_Prx ***
19853726-GTTTT-TTTTA 17741846-GTTTT-TTTTA P5_Prx ***
27127729-TTCTTTCTTTCTC-T 24981582-TTCTTTCTTTCTC-T P1_g3 ***
28336709-TAG-AAA 26190562-TAG-AAA P1_b4 ***
58849912-CTCC-TTCA 56740956-GGAG-TGAA ***
58831062-T-C 56759809-A-G ***
58827767-G-T 56763104-C-A ***
26780856-G-C 24634709-G-C P1_g2 ***
27686396-T-A 25540249-T-A P1_Y2 ***
21114155-T-C 18952269-T-C ***
26908489-C-A 24762342-C-A P1_r3 ***
27060033-A-T 24913886-A-T P1_r4 ***
27060053-A-T 24913906-A-T P1_r4 ***
27213797-C-T 25067650-C-T P1_g3 ***
27249198-G-A 25103051-G-A P1_g3 ***
27253682-G-A 25107535-G-A P1_g3 ***
27263407-G-T 25117260-G-T P1_g3 ***
27389052-G-A 25242905-G-A P1_g3 ***
27507001-A-C 25360854-A-C P1_Y2 ***
27552655-A-T 25406508-A-T P1_Y2 ***
27641726-A-G 25495579-A-G P1_Y2 ***
27648977-C-T 25502830-C-T P1_Y2 ***
27713977-A-G 25567830-A-G P1_Y2 ***
28633063-G-T 26486916-G-T ***
27714007-T-G 25567860-T-G P1_Y2 ***
27852456-A-G 25706309-A-G P1_Y2 ***
27872479-G-A 25726332-G-A P1_Y2 10×A***
27907078-G-T 25760931-G-T P1_Y2 ***
27936405-A-G 25790258-A-G P1_Y2 ***
28120592-A-G 25974445-A-G P1_b4 ***
28147191-A-C 26001044-A-C P1_b4 ***
28162935-T-C 26016788-T-C P1_b4 ***
28191708-A-T 26045561-A-T P1_b4 ***
28262253-A-G 26116106-A-G P1_b4 ***
28315652-T-G 26169505-T-G P1_b4 ***
28428655-T-C 26282508-T-C P1_gr2 ***
28478156-A-C 26332009-A-C ***
21146342-T-C 18984456-T-C ***
20865573-A-T 18703687-A-T P4_Dst ***
20984703-C-T 18822817-C-T P4_Dst ***
4848320-G-A 4980279-G-A ***
25073419-G-T 22927272-G-T g1 ***
13329178-T-G 11173502-T-G ***
24283192-G-T 22137045-G-T P3_t1 ***
22237579-AACA-CACT 20075693-AACA-CACT DYZ19 ***
22237135-A-G 20075249-A-G DYZ19 ***
16742955-T-A 14631075-T-A FT64213 ***
58913214-T-C 56677657-A-G ***
3393078-G-C 3525037-G-C ***
3428659-A-C 3560618-A-C ***
4647637-A-G 4779596-A-G ***
4831645-C-A 4963604-C-A ***
4831667-C-A 4963626-C-A ***
4831690-C-A 4963649-C-A ***
4929530-C-G 5061489-C-G ***
22226323-C-A 20064437-C-A DYZ19 ***
5010120-C-A 5142079-C-A ***
5120385-C-A 5252344-C-A ***
5158742-G-T 5290701-G-T ***
5204678-T-A 5336637-T-A ***
5331347-T-G 5463306-T-G ***
5479212-G-A 5611171-G-A ***
5574505-G-T 5706464-G-T ***
6117084-G-A 6249043-G-A FGC69067 ***
6142180-G-C 6274139-G-C IR3_Dst ***
6148702-T-A 6280661-T-A IR3_Dst ***
6177410-T-G 6309369-T-G IR3_Dst ***
6182071-T-C 6314030-T-C IR3_Dst ***
6201039-G-T 6332998-G-T IR3_Dst ***
27060014-A-T 24913867-A-T P1_r4 ***
28818262-AAATT-GAATC 26672115-AAATT-GAATC ***
6331933-T-C 6463892-T-C IR3_Dst ***
13740786-T-G 11585110-T-G ***
13472205-GA-CC 11316529-GA-CC ***
26170423-A-G 24024276-A-G P1_Y1 9×AAG***
24862288-T-A 22716141-T-A IR1_R ***
58887509-C-T 56703362-G-A ***
7573242-A-C 7705201-A-C ***
13341130-T-C 11185454-T-C ***
23074325-C-T 20912439-C-T Z40942 ***
26089044-C-A 23942897-C-A P1_Y1 ***
20568504-C-T 18406618-C-T P5_Dst ***
58868922-C-T 56721949-G-A ***
22311536-A-G 20149650-A-G DYZ19 ***
13569580-GGC-AGT 11413904-GGC-AGT ***
22337164-A-G 20175278-A-G DYZ19 ***
13740728-A-AAATGG 11585052-A-AAATGG ***
19758655-G-T 17646775-G-T P5_Prx ***
24283301-C-A 22137154-C-A P3_t1 ***
27161947-T-A 25015800-T-A P1_g3 ***
17265029-A-C 15153149-A-C BY16667 ***
24283294-G-A 22137147-G-A P3_t1 ***
58904391-G-C 56686480-C-G ***
14787828-A-AT 12675898-A-. 26×T***
28796280-GCTGC-ACTGG 26650133-GCTGC-ACTGG ***
18760242-T-TTCTC 16648362-T-TTCTC 27×TC***
17081308-TATAA-T 14969428-TATAA-T ***
26635724-A-T 24489577-A-T P1_g2 ***
28789197-A-G 26643050-A-G ***
13829458-T-TGGAAG 11708752-T-TGGAAG ***
22508009-GATT-CATG 20346123-GATT-CATG DYZ19 ***
6224566-G-A 6356525-G-A IR3_Dst ***
6773638-T-G 6905597-T-G ***
20909538-G-T 18747652-G-T P4_Dst ***
19210172-A-T 17098292-A-T ***
17994592-G-A 15882712-G-A P7_Prx ***
17994628-C-T 15882748-C-T P7_Prx ***
17994661-G-A 15882781-G-A P7_Prx ***
17994697-C-G 15882817-C-G P7_Prx ***
18016235-A-G 15904355-A-G P7_Dst ***
18274969-A-G 16163089-A-G P6_Prx ***
18286392-A-T 16174512-A-T P6_Prx ***
18286586-G-A 16174706-G-A P6_Prx ***
18346702-A-G 16234822-A-G P6_Prx ***
18353928-A-G 16242048-A-G P6_Prx ***
18528316-C-A 16416436-C-A P6_Dst ***
18900714-C-G 16788834-C-G ***
19018999-G-T 16907119-G-T ***
19583726-T-C 17471846-T-C P5_Prx ***
17265040-G-A 15153160-G-A ***
19609638-G-A 17497758-G-A P5_Prx ***
19644560-A-G 17532680-A-G P5_Prx ***
19746285-C-T 17634405-C-T P5_Prx ***
19853695-T-A 17741815-T-A P5_Prx ***
19998226-T-C 17886346-T-C P5_Prx ***
20128507-T-C 18016627-T-C P5_Dst ***
20213082-T-C 18051196-T-C P5_Dst ***
20332280-A-T 18170394-A-T P5_Dst ***
20470085-A-T 18308199-A-T P5_Dst ***
20557432-T-A 18395546-T-A P5_Dst ***
20723489-C-A 18561603-C-A P4_Prx ***
20772096-G-A 18610210-G-A P4_Prx ***
14331129-TTC-T 12210423-TTC-T ***
17549614-A-C 15437734-A-C ***
16749376-A-T 14637496-A-T ***
7268318-A-C 7400277-A-C ***
9700717-T-G 9863108-T-G IR3_Prx ***
7479180-T-C 7611139-T-C IR1_L ***
7497371-A-G 7629330-A-G IR1_L ***
7933994-C-T 8065953-C-T ***
8067970-T-C 8199929-T-C ***
8888705-T-C 9020664-T-C ***
9310708-C-A 9473099-C-A ***
9315893-C-A 9478284-C-A ***
9351314-A-C 9513705-A-C ***
9429423-A-G 9591814-A-G ***
9432055-T-C 9594446-T-C ***
9506399-A-G 9668790-A-G ***
9534014-A-C 9696405-A-C IR3_Prx ***
9539525-A-G 9701916-A-G IR3_Prx ***
9719740-A-G 9882131-A-G IR3_Prx ***
16341511-A-C 14229631-A-C ***
9722939-G-A 9885330-G-A IR3_Prx ***
13223843-C-G 11068167-C-G ***
13850959-A-G 11730253-A-G ***
14075653-G-C 11954947-G-C ***
14597432-T-C 12485632-T-C ***
14883401-A-C 12771467-A-C ***
14984837-A-T 12872905-A-T ***
14989203-G-A 12877269-G-A ***
15097753-T-A 12985841-T-A ***
15882112-T-G 13770232-T-G ***
16080938-C-A 13969058-C-A ***
16135238-T-C 14023358-T-C P8_Dst ***
16135239-G-T 14023359-G-T P8_Dst ***
16135284-G-T 14023404-G-T P8_Dst ***
59004521-A-AAGAT 56858374-A-AAGAT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 878CU19384212101990718199873
Used in age calculations19384212101990718199873
Counts of SNPs22
Variant counts last updated 2021-06-11 02:49:30.

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