Tree Position

R-P312/S116 > Z40481 > FGC84729 > ZZ37 > ZZ38 > Z29644 > S27900 > FGC53432 > FGC53433 > FGC69542 > Y146687 > A21079 > FGC72053

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRYDW-BY3
28000
BigY2
28000
BigY3
28000
56871026-C-T A*
27963089-G-C 25816942-G-C P1_Y2 A*
19698566-T-TA 17586686-T-TA FGC12993 P5_Prx 9×AA*
14992795-G-A 12880880-G-A **
10921408-T-G **
10941712-C-A **
10940771-C-A **
10931752-T-C **
10927671-T-A **
10927669-C-T **
10921467-A-G FT436634 **
10896293-AATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC-A **
10912953-G-T **
10964307-C-A **
10864663-C-G **
10849408-G-A **
10848074-T-G **
10838231-C-T **
10810938-CTCCAT-C **
10791906-A-G **
10945879-C-A **
10973120-C-A **
10964517-C-A **
11032057-C-A **
11658392-G-T **
11658323-G-T **
11654893-G-T **
13596297-C-A 11440621-C-A **
13515323-G-T 11359647-G-T **
13316969-G-T 11161293-G-T **
13255286-T-G 11099610-T-G **
11029677-C-A **
10777777-A-C **
11018889-T-C **
11012403-C-A **
11000178-T-G **
10992385-C-G **
10988926-C-A **
10974955-T-A **
10974937-C-T **
10974872-C-A **
10779102-A-C **
10764575-C-G **
10776245-C-A **
6255778-T-A 6387737-T-A IR3_Dst **
6918348-C-G 7050307-C-G **
6918340-C-A 7050299-C-A **
6918335-G-A 7050294-G-A **
6918334-C-G 7050293-C-G **
6902018-C-G 7033977-C-G **
6605149-C-A 6737108-C-A **
6358408-G-T 6490367-G-T **
6255718-T-A 6387677-T-A IR3_Dst **
6918366-A-G 7050325-A-G **
6252199-A-C 6384158-A-C IR3_Dst **
6150101-C-A 6282060-C-A IR3_Dst **
6098669-G-T 6230628-G-T **
5857389-T-C 5989348-T-C **
5435947-C-A 5567906-C-A **
5367709-G-T 5499668-G-T **
5358897-C-A 5490856-C-A **
6918353-A-G 7050312-A-G Y82871 **
6918438-A-G 7050397-A-G **
10766095-C-A **
8661311-T-C 8793270-T-C **
11664550-G-A **
10686299-C-A **
10686087-C-A **
9965174-G-T 10127565-G-T **
9567489-A-AC 9729880-A-AC IR3_Prx **
9514993-G-A 9677384-G-A **
8736785-G-T 8868744-G-T **
7996060-A-G 8128019-A-G **
7000339-A-G 7132298-A-G **
7643044-G-T 7775003-G-T **
21411718-C-CAAA 19249832-C-CAAA 31×A**
7381267-A-C 7513226-A-C **
7299816-C-A 7431775-C-A **
7264143-T-C 7396102-T-C **
7199367-G-T 7331326-G-T **
7154580-G-A 7286539-G-A **
7140426-A-T 7272385-A-T **
11658996-G-T FT208179 **
13930439-C-A 11809733-C-A **
13866793-T-C 11746087-T-C **
22538487-C-A 20376601-C-A **
27447462-GTGTGTGT-G 25301315-GTGTGTGT-G P1_Y2 **
27398494-G-T 25252347-G-T P1_g3 **
24298897-AC-A 22152750-AC-A P3_t1 **
23274830-C-A 21112944-C-A **
23204816-T-G 21042930-T-G **
23047604-C-A 20885718-C-A **
22993333-C-A 20831447-C-A **
22211923-C-A 20050037-C-A **
27877457-G-T 25731310-G-T P1_Y2 **
22172545-G-T 20010659-G-T **
10908517-G-GTGACACATCTC **
22149981-A-G 19988095-A-G **
22100958-G-A 19939072-G-A **
21888374-T-G 19726488-T-G **
21737809-A-C 19575923-A-C **
21624647-C-A 19462761-C-A **
27575975-A-G 25429828-A-G P1_Y2 **
27936764-C-CAAA 25790617-C-CAAA P1_Y2 15×A**
21049233-A-G 18887347-A-G **
15799169-T-TC 13687289-T-TC **
27491653-CTTTT-C 25345506-CTTTT-C P1_Y2 25×T**
24259830-CAA-C 22113683-CAA-C P3_b1 12×A**
20796645-A-T 18634759-A-T P4_Prx 10×T**
20679268-G-T 18517382-G-T P4_Prx **
18329094-T-A 16217214-T-A P6_Prx **
17545988-C-T 15434108-C-T ****
20350451-CAAAA-C 18188565-CAAAA-C P5_Dst 27×A**
56836470-T-C *****
28614759-A-G 26468612-A-G **
56835440-C-A **
56826563-G-C **
28744984-C-A 26598837-C-A **
28731334-C-A 26585187-C-A **
28719840-C-A 26573693-C-A **
28692565-G-T 26546418-G-T **
28687912-C-A 26541765-C-A **
21182435-C-A 19020549-C-A **
21037502-G-A 18875616-G-A FT188625 **
4908200-C-T 5040159-C-T **
14992853-C-A 12880938-C-A **
15940132-C-T 13828252-C-T **
15746057-A-G 13634177-A-G **
15477857-C-A 13365977-C-A **
15301629-G-T 13189728-G-T **
15178998-G-T 13067084-G-T **
10944694-C-T **
15001453-C-A 12889538-C-A **
14989043-C-A 12877109-C-A **
16344626-C-G 14232746-C-G **
14717778-G-C 12605846-G-C FGC67560 **
14582246-C-A 12470446-C-A **
14557072-C-A 12445273-C-A **
14553105-C-T 12441306-C-T **
14518823-A-G 12407024-A-G **
14465331-C-A 12344604-C-A **
14158146-C-A 12037440-C-A **
10944687-TTC-T **
16351576-G-C 14239696-G-C **
20972772-C-A 18810886-C-A P4_Dst **
10944685-AC-A **
20825423-G-T 18663537-G-T P4_Gap **
20655063-T-C 18493177-T-C P4_Prx **
19885248-G-A 17773368-G-A P5_Prx **
19310284-T-C 17198404-T-C **
19301951-G-C 17190071-G-C **
19252948-C-CAA 17141068-C-CAA 13×A**
19042689-C-A 16930809-C-A Y55259 **
19019505-G-A 16907625-G-A **
16619959-C-A 14508079-C-A **
18819731-C-A 16707851-C-A **
18769441-C-A 16657561-C-A **
18570031-C-A 16458151-C-A **
18218887-C-A 16107007-C-A **
17870969-G-A 15759089-G-A **
17840374-T-A 15728494-T-A **
17224577-G-A 15112697-G-A **
17158606-C-T 15046726-C-T **
5141695-C-A 5273654-C-A **
7456127-A-G 7588086-A-G IR1_L **
3863196-C-T 3995155-C-T FT318764 **
22424446-C-T 20262560-C-T FGC32648FGC81551 DYZ19 ****
13468064-G-A 11312388-G-A **
13468066-G-A 11312390-G-A **
2785227-C-A 2917186-C-A **
6663388-C-A 6795347-C-A **
17038463-C-A 14926583-C-A **
23475702-G-T 21313816-G-T **
4357455-C-A 4489414-C-A **
14143042-C-A 12022336-C-A **
15799167-C-CTTT 13687287-C-CTTT **
7140416-C-A 7272375-C-A **
9773435-C-A 9935826-C-A **
10974115-C-A **
5524815-C-A 5656774-C-A **
10984220-C-A **
13974693-C-A 11853987-C-A 17×T**
11672076-C-A **
25964928-G-T 23818781-G-T P1_Y1 **
3131668-G-T 3263627-G-T **
18520541-G-T 16408661-G-T P6_Dst **
16539768-G-T 14427888-G-T **
13987226-C-A 11866520-C-A **
10992381-TC-T **
10864675-A-G **
7081013-C-A 7212972-C-A **
13468052-C-A 11312376-C-A **
10653138-C-T **
13225881-C-A 11070205-C-A **
10664963-C-A **
17545939-C-A 15434059-C-A **
23223306-C-A 21061420-C-A **
6918327-T-A 7050286-T-A **
22312438-G-T 20150552-G-T DYZ19 **
14128250-C-A 12007544-C-A **
19274824-G-A 17162944-G-A FT24836 **
18873790-C-A 16761910-C-A **
13140531-T-A 10630017-T-A **
14073541-C-A 11952835-C-A **
26379411-C-A 24233264-C-A P1_Y1 22×A**
27883537-A-G 25737390-A-G P1_Y2 **
7780655-C-A 7912614-C-A **
18206642-T-A 16094762-T-A **
10779110-T-C **
18890882-A-ATT 16779002-A-ATT 17×T**
10938800-C-A **
18398190-CACATATAT-C 16286310-CACATATAT-C P6_Gap **
10757794-G-C **
23434203-C-A 21272317-C-A **
13898746-G-T 11778040-G-T **
3767754-A-G 3899713-A-G **
10989459-C-T **
26099741-G-T 23953594-G-T P1_Y1 **
14743841-C-A 12631910-C-A **
24931633-T-G 22785486-T-G g1 **
14031696-C-CTCTTTCTTTCTTTCTT 11910990-C-CTCTTTCTTTCTTTCTT 13×TCTT**
14339078-C-CT 12218373-C-CT **
10865892-C-A **
10771872-G-T **
10993188-C-A **
10921369-C-T **
10955632-A-G **
3116074-C-A 3248033-C-A **
7285643-G-A 7417602-G-A **
23419079-C-A 21257193-C-A **
10779095-G-C **
3500615-C-A 3632574-C-A **
18766769-C-A 16654889-C-A **
4951895-C-A 5083854-C-A **
5850992-C-A 5982951-C-A **
17859318-GT-G 15747438-GT-G **
7579815-G-T 7711774-G-T **
15940138-T-G 13828258-T-G **
14718787-AT-A 12606855-AT-A **
28460922-C-T 26314775-C-T **
5871769-C-A 6003728-C-A **
2693367-A-G 2825326-A-G **
2729955-A-C 2861914-A-C **
2865648-C-A 2997607-C-A **
3128666-A-G 3260625-A-G **
3156506-G-T 3288465-G-T **
3245497-G-T 3377456-G-T **
3591788-C-A 3723747-C-A **
3626448-G-T 3758407-G-T **
2888870-C-CA 3020829-C-CA 32×A**
9938367-C-A 10100758-C-A **
10983692-T-C **
13402583-C-A 11246907-C-A **
15355239-C-A 13243358-C-A **
10750058-C-G **
6918363-T-C 7050322-T-C **
15127809-C-A 13015896-C-A **
10812246-A-C FT432276 **
10779113-T-C **
8109899-G-A 8241858-G-A **
15940143-C-T 13828263-C-T **
6918364-T-C 7050323-T-C **
6100811-T-C 6232770-T-C ***
26723674-A-C 24577527-A-C P1_g2 ***
11334012-T- ***
6059792-A-G 6191751-A-G ***
3086576-C-A 3218535-C-A ***
5936147-GA-G 6068106-GA-G ***
6468926-TA-T,TAAA 6600885-TA-T,TAAA 28×A***
6489371-CAA-C,CAAA 6621330-CAA-C,CAAA 25×A***
7131951-G-GCCCCCC 7263910-G-GCCCCCC ***
7364367-GTT-G,GTTT 7496326-GTT-G,GTTT 27×T***
7379610-C-CTT 7511569-C-CTT 11×T***
28805755-G-A 26659608-G-A ***
3804732-CAAAAAA-C,CAAAA 3936691-CAAAAAA-C,CAAAA 29×A***
4146052-T-G 4278011-T-G ***
7414277-CAA-C,CA 7546236-CAA-C,CA 27×A***
7768559-C-G 7900518-C-G ***
3628738-G-GTTT 3760697-G-GTTT ***
3628734-AAGAG-A 3760693-AAGAG-A ***
8030059-ACT-A 8162018-ACT-A ***
3414299-GACA-G 3546258-GACA-G 5×ACA***
8888375-C-CTTTTT 9020334-C-CTTTTT 25×T***
9377863-A-G 9540254-A-G ***
9507982-CT-C,CTTT 9670373-CT-C,CTTT 34×T***
9786330-T-C 9948721-T-C BY80979 ***
9914613-A-C 10077004-A-C ***
10622847-G-T ***
5904059-G-T 6036018-G-T ***
4392282-CAAAAAAAAAAAAAAAAAAAAAA-C 4524241-CAAAAAAAAAAAAAAAAAAAAAA-C 45×A***
5902298-T- ***
5267966-T-C 5399925-T-C ***
28720133-T-A 26573986-T-A ***
24884168-CTT-C 22738021-CTT-C g1 20×T***
28707500-CTT-C 26561353-CTT-C 10×T***
4947563-T-C 5079522-T-C ***
13451211-C-CCATTCCATTCCATTCCACGT 11295535-C-CCATTCCATTCCATTCCACGT ***
26315577-T- ***
4974130-A-G 5106089-A-G ***
5147472-G-T 5279431-G-T ***
5147477-G-T 5279436-G-T ***
15084869-TAGAAAGAA- 14×AGAA***
21809809-TTTA-T,T 19647923-TTTA-T,T 12×TTA***
56858476-GGAAAGAAAGAAA-G,GGAAA 16×GAAA***
26153759-G-T 24007612-G-T P1_Y1 ***
56863679-C-T ***
11334011-A- ***
2971478-A-G 3103437-A-G ***
4722483-T-G 4854442-T-G ***
5962109-CATATAT-C,CAT 6094068-CATATAT-C,CAT 20×AT***
5468159-C-A 5600118-C-A ***
3081812-C-CA,CAA 3213771-C-CA,CAA 33×A***
5468170-A-T 5600129-A-T ***
7141147-T- ***
12631481-CT-C,C 13×T***
5550280-G-GTTTTT 5682239-G-GTTTTT 39×T***
4498212-T-G 4630171-T-G ***
5769162-G-T 5901121-G-T ***
28370015-T-G,TAG 26223868-T-G,TAG P1_gr2 16×AG***
6776497-CAA-C,CA 6908456-CAA-C,CA 28×A***
5331924-A-G 5463883-A-G ***
17731014-CA-C,CAA 15619134-CA-C,CAA 35×A***
10757971-AT-A ***
13583684-G-T 11428008-G-T ***
15658259-TAC-T,T 13546379-TAC-T,T 11×AC***
10973940-C-CCAT ***
15580297-T-A 13468417-T-A ***
15309784-C-CAA 13197889-C-CAA ***
15305889-AG-A,AATG 13193991-AG-A,AATG ***
11033985-C-A ***
14379561-T-TGATAGATA,TGATAGATA 12258857-T-TGATAGATA,TGATAGATA 10×GATA***
12218403-T- ***
14301587-A-T 12180881-A-T ***
14289236-T-G 12168530-T-G ***
12151982-T- ***
14008801-AAAC-A 11888095-AAAC-A ***
13950972-A-T 11830266-A-T ***
13488739-G-A 11333063-G-A ***
16063171-G-GTTTCTTTCTTTC,GTTTCTTTCTTTC 13951291-G-GTTTCTTTCTTTC,GTTTCTTTCTTTC 14×TTTC***
13470083-C-T 11314407-C-T ***
13470039-T-TACAA 11314363-T-TACAA ***
13470035-CCTGT-C 11314359-CCTGT-C ***
13451191-T-TCCATTCCATTCCACTGCATTCCACTCCACTC 11295515-T-TCCATTCCATTCCACTGCATTCCACTCCACTC ***
13451163-T-TCCA 11295487-T-TCCA ***
13450166-CCA-C 11294490-CCA-C ***
13255793-A-T 11100117-A-T ***
13448759-C-CA 11293083-C-CA ***
13371920-T-C 11216244-T-C ***
13260617-A-G 11104941-A-G ***
13257878-C-A 11102202-C-A ***
13255800-T-G 11100124-T-G ***
13255797-C-G 11100121-C-G ***
15940306-CAAAA-C,CAAAAAAA 13828426-CAAAA-C,CAAAAAAA 24×A***
10973939-A-ATT ***
24931669-A-G 22785522-A-G g1 ***
19138086-A-T 17026206-A-T ***
24305272-CAAA-C,CAA 22159125-CAAA-C,CAA P3_t1 21×A***
23529764-G-T 21367878-G-T ***
21254127-T- ***
22802868-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTTTTTTTTTTTT 20640982-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTTTTTTTTTTTT 32×T***
10770755-T-G ***
22445510-T-C 20283624-T-C BY52677 DYZ19 ***
22312477-G-T 20150591-G-T DYZ19 ***
22312458-T-C 20150572-T-C DYZ19 ***
10817864-C-T ***
21980001-CA-C,CAAA 19818115-CA-C,CAAA 27×A***
21830146-TA-T 19668260-TA-T 9×A***
21402181-C-CT,CT 19240295-C-CT,CT 34×T***
19301018-T-C 17189138-T-C ***
19138084-C-G 17026204-C-G 10×TA***
16535053-CTT-C,CTTTT 14423173-CTT-C,CTTTT 35×T***
19138057-ACTATATATATAT-A 17026177-ACTATATATATAT-A ***
19138056-C-G 17026176-C-G ***
10910804-T-C ***
19138055-C-G 17026175-C-G ***
19138053-T-G 17026173-T-G ***
19024843-G-GTCTGTTGGAATACCCTGCCAT 16912963-G-GTCTGTTGGAATACCCTGCCAT ***
18447440-A-C 16335560-A-C P6_Dst ***
18187232-T-C 16075352-T-C ***
18050069-A-G 15938189-A-G ***
17841328-G-GAC,GACAC 15729448-G-GAC,GACAC 22×AC***
17632569-A-AT 15520689-A-AT ***
17319971-GAGAA-G,G 15208091-GAGAA-G,G 13×AGAA***
17196757-A-AAGGT,AAGGT 15084877-A-AAGGT,AAGGT ***
16968150-CAA-C,CAAAA 14856270-CAA-C,CAAAA 26×A***
14331131-CTT-C,CTTT 12210425-CTT-C,CTTT 25×T***
26089061-CAA-C 23942914-CAA-C P1_Y1 20×A***
26060211-T-TAAAA 23914064-T-TAAAA P1_Y1 ***
18109358-TAAA-T,TAA 15997478-TAAA-T,TAA 23×A***
9063859-CTTT-C,CTT 9226250-CTTT-C,CTT 16×T***
2845821-CAAAAAA-C 2977780-CAAAAAA-C 28×A***
18994663-AAAAG-A 16882783-AAAAG-A 5×AAAG***
13468081-T-C 11312405-T-C ***
13255796-A-G 11100120-A-G ***
7287974-CTT-C 7419933-CTT-C 12×T***
6648643-T-A 6780602-T-A ***
15179007-T-A 13067093-T-A ***
26228724-T-G 24082577-T-G P1_Y1 ***
22645631-CTA-C,CTATA 20483745-CTA-C,CTATA ***
8644324-CAA-C 8776283-CAA-C 32×A***
10664405-A-T ***
17703236-TAAAA-T 15591356-TAAAA-T 22×A***
22974116-CAAA-C,CAAAA 20812230-CAAA-C,CAAAA 24×A***
8095505-C-A 8227464-C-A ***
16599032-G-T 14487152-G-T ***
13470031-C-T 11314355-C-T ***
17187634-CA-C,CAA 15075754-CA-C,CAA 15×A***
16409013-CTTTTTT-C 14297133-CTTTTTT-C 18×T***
13487838-G-A 11332162-G-A ***
3253170-CTTTT-C 3385129-CTTTT-C 22×T***
22529613-C-T 20367727-C-T ***
13941585-C-A 11820879-C-A ***
4794852-C-A 4926811-C-A A3207 ***
2960091-G-T 3092050-G-T ***
22722338-CT-C,CTT 20560452-CT-C,CTT 24×T***
4834245-T-TA,TAA 4966204-T-TA,TAA 23×A***
3141361-G-A 3273320-G-A ***
8599983-A-T 8731942-A-T ***
10924711-GCCATT-G ***
20104255-GGGAGA-G,GGAGA 17992375-GGGAGA-G,GGAGA P5_Dst ***
23976876-TTGTG-T 21830729-TTGTG-T 10×TG***
5198664-A-G 5330623-A-G ***
19221873-TTG-T 17109993-TTG-T ***
8616020-CT-C 8747979-CT-C L130 10×T***
13133350-C-A 10622836-C-A ***
3607966-A-G 3739925-A-G ***
5636246-A-G 5768205-A-G ***
6091007-G-T 6222966-G-T ***
6091577-C-T 6223536-C-T ***
6091605-C-T 6223564-C-T ***
14062790-C-CCA 11942084-C-CCA 10×CA***
18867339-C-CTT 16755459-C-CTT 24×T***
19007619-C-CATAT 16895739-C-CATAT 10×AT***
5066020-T-TA 5197979-T-TA 10×A***
24573423-CTT-C 22427276-CTT-C P3_t2 21×T***
5590414-C-T 5722373-C-T ***
7150391-CA-C 7282350-CA-C 10×A***
6485445-GTA-G 6617404-GTA-G ***
8433166-ATG-A 8565125-ATG-A ***
9100039-ATG-A 9262430-ATG-A ***
16599038-G-T 14487158-G-T ***
5066207-G-T 5198166-G-T ***
4408904-GA-G 4540863-GA-G 13×A***
7137214-TACAC-T 7269173-TACAC-T 9×AC***
3838601-C-CTTTTTTT 3970560-C-CTTTTTTT 31×T***
16593945-CATAT-C,CAT 14482065-CATAT-C,CAT 11×AT***
4498350-AT-A 4630309-AT-A 9×T***
18982582-AAAAAG-A 16870702-AAAAAG-A ***
18793534-G-T 16681654-G-T ***
2810452-A-AT 2942411-A-AT 9×T***
5936145-TA-T 6068104-TA-T ***
20104254-GGGGA-G 17992374-GGGGA-G P5_Dst ***
8660550-CAAAAA-C 8792509-CAAAAA-C 18×A***
14693739-A-G 12581805-A-G ***
18263856-CAAA-C,CA 16151976-CAAA-C,CA 26×A***
5557238-C-CAA 5689197-C-CAA 23×A***
7461754-GT-G,GTT 7593713-GT-G,GTT IR1_L 23×T***
27937836-G-T 25791689-G-T P1_Y2 17×A***
6525768-CAA-C,CA 6657727-CAA-C,CA 24×A***
5147469-AAAG-A 5279428-AAAG-A ***
9508553-TTTTG-T 9670944-TTTTG-T ***
14831881-GT-G 12719948-GT-G ******
23597128-G-A 21435242-G-A ******
7015324-CTT-C,CTTT 7147283-CTT-C,CTTT 23×T***
5231882-C-A 5363841-C-A ***
14075599-GAA-G 11954893-GAA-G 38×A***
6147446-ATTT-A 6279405-ATTT-A IR3_Dst 19×T***
23181453-CAA-C 21019567-CAA-C 34×A***
13607821-A-AT 11452145-A-AT 10×T***
5400468-CTTT-C 5532427-CTTT-C 19×T***
5167192-G-GA 5299151-G-GA 9×A***
7280952-CT-C,CTTT 7412911-CT-C,CTTT 26×T***
3403261-CAAAAA-C,CAAAA 3535220-CAAAAA-C,CAAAA 30×A***
3039839-CT-C,CTT 3171798-CT-C,CTT 22×T***
5784062-CA-C,CAA 5916021-CA-C,CAA 21×A***
16809372-TGATAGATA-T,TGATA 14697492-TGATAGATA-T,TGATA 11×GATA***
13450149-T-A 11294473-T-A ***
13450169-TTCCACTCCATTGCATTCCATTCC-T 11294493-TTCCACTCCATTGCATTCCATTCC-T ***
13449956-C-CCTCCTCCGTT 11294280-C-CCTCCTCCGTT ***
13450083-AC-A 11294407-AC-A ***
18892280-A-T,T 16780400-A-T,T ***
18892281-T-A,A 16780401-T-A,A ***
13587406-CT-C 11431730-CT-C 9×T***
18447445-A-T 16335565-A-T P6_Dst ***
6457773-TA-T 6589732-TA-T 15×A***
16250624-G-GT,GTT 14138744-G-GT,GTT 28×T***
5682811-GAA-G 5814770-GAA-G 12×A***
56850065-A-G ***
6918567-G-T 7050526-G-T ***
7724860-C-A 7856819-C-A ***
13324756-C-A 11169080-C-A ***
13799249-G-T 11678543-G-T ***
17446767-C-CTTT 15334887-C-CTTT 33×T***
15115050-C-A 13003137-C-A ***
16002458-G-A 13890578-G-A ***
19023843-C-A 16911963-C-A ***
21093370-A-G 18931484-A-G ***
22166158-C-A 20004272-C-A ***
23840885-C-T 21678999-C-T ***
28558454-C-A 26412307-C-A ***
56830963-A-G,T ***
9847289-AT-A,ATT 10009680-AT-A,ATT 28×T***
15262458-CAAAAAAA-C 13150542-CAAAAAAA-C 30×A***
14969046-CTT-C 12857121-CTT-C 11×T***
22529632-T-C 20367746-T-C FT164245 ***
13645651-T-C 11489975-T-C Y45226BY86858 ***
19720709-AT-A,ATT 17608829-AT-A,ATT P5_Prx 23×T***
18263883-G-T 16152003-G-T ***
16990888-TAA-T 14879008-TAA-T 11×A***
6648646-T-A 6780605-T-A ***
4477371-AT-A 4609330-AT-A 9×T***
5846221-T-A 5978180-T-A ***
16599044-G-T 14487164-G-T ***
13257893-A-T 11102217-A-T ***
13488498-C-A 11332822-C-A ***
22980779-A-C 20818893-A-C ***
19547538-A-T 17435658-A-T ***
56867058-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 28000961499778464137733119
Kit: 280001502232994256968370951
Kit: 280001514142793161718323641
Used in age calculations1502232994256968370951
Counts of SNPs00
Variant counts last updated 2022-09-26 02:50:07.



Big Tree Main Page