Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > IJK > IJ > M170 > Z2647 > L460 > M436 > M223 > CTS10057 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
264233
18305329-T-C 16193449-T-C P6_Prx A*
19930865-G-A 17818985-G-A P5_Prx A*
24270343-C-T 22124196-C-T P3_b1 A*
25848857-T-C 23702710-T-C P1_Y1 A*
18315429-C-T 16203549-C-T P6_Prx A*
19950182-A-ATG 17838302-A-ATG P5_Prx 18×TGA*
18709290-C-CA 16597410-C-CA 10×AA*
20046973-C-CA 17935093-C-CA P5_Prx 9×AA*
25917650-G-C 23771503-G-C P1_Y1 A*
26033909-T-A 23887762-T-A P1_Y1 A*
26121832-T-C 23975685-T-C P1_Y1 A*
26199330-C-T 24053183-C-T P1_Y1 A*
27840604-A-G 25694457-A-G P1_Y2 A*
6155551-G-T 6287510-G-T IR3_Dst A*
6243380-A-T 6375339-A-T IR3_Dst A*
19761200-T-C 17649320-T-C P5_Prx A*
19596898-C-A 17485018-C-A P5_Prx YA*
20023522-G-A 17911642-G-A P5_Prx A*
19982138-T-C 17870258-T-C P5_Prx A*
19826663-T-C 17714783-T-C P5_Prx A*
20770963-T-C 18609077-T-C P4_Prx A*
28817786-G-A 26671639-G-A A*
18344348-T-A 16232468-T-A BY1423 P6_Prx A*
9758103-C-T 9920494-C-T Y13000 Y+
18922526-G-T 16810646-G-T Y55063 YY+
19104318-T-C 16992438-T-C Y13425 YY+
19080368-C-A 16968488-C-A S21760 YY+
21152889-T-A 18991003-T-A BY130727 Y+
18832386-C-T 16720506-C-T Y30849 YY+
21135897-A-G 18974011-A-G PH4661 Y13427 YY+
18812958-G-T 16701078-G-T Y13003 PH4016 YY+
5212387-G-T 5344346-G-T Y13413 +
9396777-G-T 9559168-G-T Y48334 YY+
9164288-G-A 9326679-G-A Y30845 +
19118329-C-A 17006449-C-A Y30835 YY+
21073442-C-T 18911556-C-T Y30850 YY+
19149539-G-C 17037659-G-C Y30830 YY+
17846784-T-C 15734904-T-C S20291 YY+
9785442-C-A 9947833-C-A Y13418 Y+
9848031-G-A 10010422-G-A Y30848 YY+
4780058-A-T 4912017-A-T Y29611 +
9873986-A-G 10036377-A-G Y13419 Y+
20813041-T-G 18651155-T-G S22458 P4_Gap +
10028940-T-C 10191331-T-C BY37414 Y+
19551215-G-A 17439335-G-A Y30844 Y+
9785441-A-C 9947832-A-C Y13417 Y+
19453566-A-T 17341686-A-T Y13004 YY+
20814893-C-A 18653007-C-A Y30836 P4_Gap +
9509951-A-G 9672342-A-G BY45905 +
19430441-A-G 17318561-A-G Y13426 PH4495 YY+
19397733-T-G 17285853-T-G S22215 YY+
19228863-G-T 17116983-G-T Y15489 YY+
13739-C-T +
3345910-A-ATG 3477869-A-ATG +
17691819-G-A 15579939-G-A S20076 YY+
14872608-A-G 12760678-A-G S16500 YY+
15975799-T-C 13863919-T-C Y30831 YY+
15625293-C-G 13513413-C-G Y30834 YY+
15602209-GC-G 13490329-GC-G +
15251084-G-A 13139170-G-A S16912 Y+
15039779-C-G 12927869-C-G PH1589 Y13421 YY+
13195687-A-G 11040011-A-G BY45933 +
14573613-G-T 12461813-G-T S16171 YY+
2655925-T-G 2787884-T-G Y30847 YY+
13703560-TG-T 11547884-TG-T +
14364605-T-C 12243900-T-C Y29614 YY+
14317129-T-C 12196423-T-C Y30838 YY+
14313233-C-A 12192527-C-A S15802 YY+
13805760-G-A 11685054-G-A S14548 +
13841615-G-A 11720909-G-A Y13420 +
14039966-T-C 11919260-T-C Y30832 YY+
15987283-C-T 13875403-C-T Y30853 YY+
16202490-A-T 14090610-A-T L623 YY+
17616605-T-C 15504725-T-C Y29615 YY+
17091112-C-A 14979232-C-A Y30842 YY+
17602926-C-T 15491046-C-T Y13002 YY+
17279784-AATAAT-A 15167904-AATAAT-A +
3345912-T-A 3477871-T-A Y13414 +
21356155-C-T 19194269-C-T Y13005 YY+
17200197-C-T 15088317-C-T Y38222 YY+
17169349-G-T 15057469-G-T Y13423 PH2873 YY+
17136377-C-T 15024497-C-T Y13429 PH2847 YY+
16836776-C-A 14724896-C-A Y14990 YY+
16231367-G-T 14119487-G-T S18009 YY+
16670028-A-T 14558148-A-T Y13001 PH2441 YY+
16659951-A-G 14548071-A-G Y30829 YY+
16599549-G-A 14487669-G-A PH2391 Y13422 YY+
16532454-G-A 14420574-G-A Y13428 YY+
2856115-AGAAAAC-T 2988074-AGAAAAC-T +
2824383-G-T 2956342-G-T PH66 YY+
16367970-G-T 14256090-G-T Y30840 YY+
21341396-G-A 19179510-G-A Y30851 YY+
18935996-A-C 16824116-A-C Y13424 PH4107 YY+
21663708-A-C 19501822-A-C S23413 YY+
8394387-G-A 8526346-G-A S11391 YY+
6707066-C-G 6839025-C-G Y12997 PH150 YY+
7960942-T-C 8092901-T-C Y30837 YY+
6910828-C-T 7042787-C-T Y29612 YY+
8637412-C-T 8769371-C-T Y12999 YY+
8614375-C-T 8746334-C-T Y30846 YY+
8609316-CA-C 8741275-CA-C +
23139414-T-A 20977528-T-A Y29617 YY+
19269448-C-T 17157568-C-T Y30843 YY+
8455339-C-A 8587298-C-A Y30833 YY+
8439414-C-T 8571373-C-T Y29613 YY+
23467635-G-T 21305749-G-T Y15497 YY+
6647677-G-A 6779636-G-A Y12996 YY+
23485135-G-C 21323249-G-C Y29618 YY+
6826657-C-A 6958616-C-A YY+
23608388-T-C 21446502-T-C Y30852 YY+
23655314-G-A 21493428-G-A Y15498 Y+
6843971-AGT-A 6975930-AGT-A +
23798438-T-C 21636552-T-C Y13006 Y+
24383412-T-A 22237265-T-A Y29619 Y+
28720571-A-G 26574424-A-G Y13007 +
13983546-AGAAGGAAG-A 11862840-AGAAGGAAG-A BY30716 11×GAAG+
8202243-C-T 8334202-C-T S11130 YY+
8663297-G-A 8795256-G-A Y47712 YY+
24410261-C-A 22264114-C-A Y13412 Y+
5864122-G-A 5996081-G-A Y15490 +
22470272-C-T 20308386-C-T BY37417 DYZ19 +
21864417-G-A 19702531-G-A Y30839 YY+
7236301-C-T 7368260-C-T PH551 Y12998 YY+
21963460-T-C 19801574-T-C S23785 YY+
8836363-A-T 8968322-A-T Y13416 YY+
22148558-C-T 19986672-C-T Y30841 YY+
22215739-G-T 20053853-G-T S24151 Y+
22279681-C-G 20117795-C-G BY37415 DYZ19 +
22462823-G-A 20300937-G-A BY37416 DYZ19 +
22272553-C-T 20110667-C-T BY47279 DYZ19 +
28795571-A-G 26649424-A-G BY151496 +
7516186-A-G 7648145-A-G Y13415 Y+
22506236-G-T 20344350-G-T BY45289 DYZ19 +
22537358-A-T 20375472-A-T Y29616 Y+
13712703-C-A 11557027-C-A *
17479724-TAA-T,TA 15367844-TAA-T,TA 13×A*
22236033-A-G 20074147-A-G DYZ19 *
7647094-GAA-G,GA 7779053-GAA-G,GA 12×A*
17923746-A-AAAAGAAAGAAAGAAAG 15811866-A-AAAAGAAAGAAAGAAAG 11×AAAG*
17923746-A-AAG 15811866-A-AAG 11×AAAG*
8716918-A-AT 8848877-A-AT 10×T*
23274482-A-AAG 21112596-A-AAG 13×AG*
13827436-T-TTGGAATGGAA 11706730-T-TTGGAATGGAA 10×TGGAA*
26134929-G-A 23988782-G-A BY48066 P1_Y1 *
7832159-CTTT-C 7964118-CTTT-C *
13848945-CGGAAT-C 11728239-CGGAAT-C 8×GGAAT*
25885855-G-GAAAGAAAGAAA 23739708-G-GAAAGAAAGAAA P1_Y1 *
22488051-G-T 20326165-G-T DYZ19 *
27827506-C-T 25681359-C-T P1_Y2 *
7508355-T-TTTCCTTCCTTCC 7640314-T-TTTCCTTCCTTCC 13×TTCC*
18149590-GATAC-G 16037710-GATAC-G Z29551 10×ATAC*
17923743-G-A 15811863-G-A YY*
16406853-ATTT-A 14294973-ATTT-A 20×T*
13648962-A-AGGAATGGAAT 11493286-A-AGGAATGGAAT 9×GGAAT*
14083949-A-AATAGATAGATAG 11963243-A-AATAGATAGATAG 12×ATAG*
22236034-T-G 20074148-T-G DYZ19 *
7450226-G-T 7582185-G-T IR1_L **
11031290-G-A **
11036225-C-A **
7347583-C-A 7479542-C-A **
11028325-C-A **
10971475-T-C **
10972194-C-A **
10983875-C-T **
10965007-C-A **
10987534-C-A **
10993115-C-A **
11003704-A-T **
10965002-C-A **
7335712-TC-T 7467671-TC-T **
11003738-CACTCCA-C **
11003758-C-CGCAAA **
11012116-C-A **
10964576-C-A **
7422603-T-C 7554562-T-C **
11027601-C-A **
10985703-C-A **
13484755-G-T 11329079-G-T **
11037997-C-T **
13801348-C-A 11680642-C-A **
11643008-G-C **
7335701-T-G 7467660-T-G **
7320482-C-A 7452441-C-A **
11650378-A-G **
11654674-G-T **
11676562-G-A **
13856303-AAATGGAATGGAATGGAATGG-A 11735597-AAATGGAATGGAATGGAATGG-A 15×AATGG**
13627366-T-C 11471690-T-C **
13857364-AGGAAT-A 11736658-AGGAAT-A **
7309455-C-A 7441414-C-A **
13859950-G-T 11739244-G-T **
13894392-A-C 11773686-A-C **
13894412-T-A 11773706-T-A **
13899210-G-A 11778504-G-A **
13902925-C-A 11782219-C-A **
13713867-G-C 11558191-G-C **
13611071-A-G 11455395-A-G **
11038003-C-A **
13438355-C-A 11282679-C-A **
13245467-C-A 11089791-C-A **
13321418-T-G 11165742-T-G **
13429636-G-T 11273960-G-T **
13429652-G-C 11273976-G-C **
13434353-T-C 11278677-T-C **
7335702-G-C 7467661-G-C **
13461359-A-T 11305683-A-T **
13606684-C-A 11451008-C-A **
10949614-A-C **
13552268-C-A 11396592-C-A **
13558204-C-A 11402528-C-A **
13566799-C-A 11411123-C-A **
13578573-C-T 11422897-C-T **
13583099-A-G 11427423-A-G **
13584813-C-T 11429137-C-T **
10959046-C-A **
10869831-C-G **
10949570-C-T **
10749716-A-C **
10663484-C-A **
10687323-C-A **
10692560-T-G **
10693001-CACT-C **
10744677-C-A **
10745455-C-A **
10752363-C-G **
10660369-A-C **
13953035-G-A 11832329-G-A **
8326248-A-T 8458207-A-T **
10753257-T-G **
10755582-C-CACTCCACTCG **
10755593-A-T **
10755601-T-TTCTTG **
10755616-C-T **
10661659-C-A **
10653703-C-A **
10755817-C-A **
9482306-A-G 9644697-A-G **
9111436-C-A **
8973147-G-T 9135538-G-T **
9025352-G-A 9187743-G-A **
8912167-T-C 9044126-T-C **
9437189-T-G 9599580-T-G **
8901076-C-CACACACACATATATATATATATAT 9033035-C-CACACACACATATATATATATATAT 15×AT**
9451465-G-T 9613856-G-T **
8761837-T-C 8893796-T-C **
10006080-C-A 10168471-C-A **
9513309-A-G 9675700-A-G **
8723893-G-T 8855852-G-T **
9933946-G-T 10096337-G-T **
9936423-T-C 10098814-T-C **
8720405-C-T 8852364-C-T **
9977422-G-A 10139813-G-A **
9996217-C-A 10158608-C-A **
10755615-TCCATA-T **
10756840-C-T **
10941499-C-A **
10911728-G-A **
10869857-C-T **
10877767-C-G **
10884744-G-C **
10889775-C-T **
10889783-TC-T **
10901561-C-A **
10901574-C-A **
10918442-A-G **
10869802-TCTG-T **
7861192-A-G 7993151-A-G **
10929055-C-A **
10934536-C-A **
10934902-G-A **
7642966-C-A 7774925-C-A **
7572876-A-G 7704835-A-G **
10941406-C-A **
9120716-ATTT-A **
10869798-T-TAAC **
10759309-A-G **
10861105-C-A **
10804310-A-G **
10805929-C-A **
10815135-A-T **
10815153-C-T **
8235608-G-T 8367567-G-T **
10842486-T-G **
10851902-C-G **
10869734-C-T **
10869791-T-C **
10869743-T-C **
10869750-A-C **
8159386-C-A 8291345-C-A **
10869754-C-T **
10869768-T-A **
10869771-A-T **
10869775-T-C **
13934191-C-A 11813485-C-A **
13208764-GGAAGAGGAAGAA-G **
13962085-T-C 11841379-T-C **
20107212-T-G 17995332-T-G P5_Dst **
19726340-T-C 17614460-T-C P5_Prx **
19726357-A-G 17614477-A-G P5_Prx **
19726379-G-C 17614499-G-C P5_Prx **
19726386-G-A 17614506-G-A P5_Prx **
19726400-A-G 17614520-A-G P5_Prx **
19873669-C-A 17761789-C-A P5_Prx **
19933393-T-A 17821513-T-A P5_Prx **
19958122-T-TC 17846242-T-TC P5_Prx **
20432814-A-G 18270928-A-G P5_Dst **
19726294-T-C 17614414-T-C P5_Prx **
20500990-C-A 18339104-C-A P5_Dst **
20582535-TAATAA-T 18420649-TAATAA-T P5_Dst **
20582541-TA-T 18420655-TA-T P5_Dst **
20802890-T-C 18641004-T-C P4_Gap **
20984909-G-T 18823023-G-T P4_Dst **
21037485-G-T 18875599-G-T **
21153631-A-G 18991745-A-G **
21153865-C-A 18991979-C-A **
21162866-A-G 19000980-A-G **
19726322-T-TA 17614442-T-TA P5_Prx **
19726269-C-T 17614389-C-T P5_Prx **
21163065-C-G 19001179-C-G **
18343526-T-C 16231646-T-C P6_Prx **
17644236-G-A 15532356-G-A **
17702427-G-A 15590547-G-A **
17963728-C-A 15851848-C-A **
17963765-G-A 15851885-G-A **
17968972-C-A 15857092-C-A **
18055157-C-A 15943277-C-A **
18101027-A-T 15989147-A-T **
18227042-G-T 16115162-G-T **
18540100-G-T 16428220-G-T **
19686892-G-GT 17575012-G-GT P5_Prx **
18728721-GAAA-G 16616841-GAAA-G 16×A**
18758990-C-A 16647110-C-A **
18875539-T-C 16763659-T-C **
19019958-G-T 16908078-G-T **
19056094-A-G 16944214-A-G **
19459746-T-G 17347866-T-G **
19459782-ATCCTT-A 17347902-ATCCTT-A **
19510292-G-GTT 17398412-G-GTT **
19646346-G-T 17534466-G-T P5_Prx **
21162882-C-A 19000996-C-A **
21196694-C-T 19034808-C-T **
17535447-C-A 15423567-C-A **
28622009-C-A 26475862-C-A **
28484420-C-A 26338273-C-A **
28499382-T-G 26353235-T-G **
28534940-CTT-C 26388793-CTT-C 18×T**
28542237-A-G 26396090-A-G **
28552023-C-A 26405876-C-A **
28576274-T-G 26430127-T-G **
28607662-G-T 26461515-G-T **
28621979-C-A 26475832-C-A **
28686101-C-A 26539954-C-A **
27690092-T-C 25543945-T-C P1_Y2 **
28687973-CTG-C 26541826-CTG-C **
28706260-C-A 26560113-C-A **
28728470-C-A 26582323-C-A **
28732021-T-A 26585874-T-A **
28741084-C-A 26594937-C-A **
28747638-A-C 26601491-A-C **
28773832-C-A 26627685-C-A **
28803182-G-T 26657035-G-T **
56883902-T-G **
27936779-A-G 25790632-A-G P1_Y2 **
26100554-GT-G 23954407-GT-G P1_Y1 **
21325703-T-A 19163817-T-A **
22625099-G-C 20463213-G-C **
21351742-C-T 19189856-C-T **
21823168-C-T 19661282-C-T **
21943913-A-T 19782027-A-T **
21949986-C-A 19788100-C-A **
22013345-A-G 19851459-A-G **
22209507-G-T 20047621-G-T **
22321726-C-G 20159840-C-G DYZ19 **
22624741-C-A 20462855-C-A **
22801401-T-A 20639515-T-A **
25997610-C-A 23851463-C-A P1_Y1 **
22811090-C-A 20649204-C-A **
22983722-C-A 20821836-C-A **
23036195-C-A 20874309-C-A **
23200017-G-T 21038131-G-T **
23200217-A-C 21038331-A-C **
23287375-C-A 21125489-C-A **
23602058-T-C 21440172-T-C **
24387714-CCTATATATATA-C 22241567-CCTATATATATA-C **
25861927-T-G 23715780-T-G P1_Y1 **
17580202-A-C 15468322-A-C **
17306394-T-A 15194514-T-A **
13984283-T-C 11863577-T-C **
14575666-G-T 12463866-G-T **
14517278-C-G 12405479-C-G **
14527504-C-A 12415705-C-A **
14530622-C-A 12418823-C-A **
14537832-A-C 12426033-A-C **
14554355-C-A 12442556-C-A **
14561319-C-T 12449520-C-T **
14564120-C-T 12452320-C-T **
14571149-A-T 12459349-A-T **
14717750-C-CTCCTG 12605818-C-CTCCTG **
14508552-G-A 12396757-G-A **
14720365-T-C 12608433-T-C **
14832148-C-T 12720215-C-T **
14909517-T-G 12797584-T-G **
14960032-T-G 12848107-T-G **
14993997-A-G 12882082-A-G Y14988 **
14994240-C-A 12882325-C-A **
15012325-T-C 12900413-T-C **
15084609-T-C 12972699-T-C **
15109348-T-C 12997435-T-C **
14517264-G-T 12405465-G-T **
14499736-A-G 12387941-A-G **
7210118-T-C 7342077-T-C **
14161720-A-C 12041014-A-C **
13986617-GA-G 11865911-GA-G 8×A**
13986670-C-A 11865964-C-A **
13997977-C-A 11877271-C-A **
14011566-C-T 11890860-C-T **
14032239-A-G 11911533-A-G **
14050505-C-A 11929799-C-A **
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10869965-C-CCCATT ***
17503369-C-A 15391489-C-A ***
18965977-GCCTTCCTTCCTT-G,GCCTT 16854097-GCCTTCCTTCCTT-G,GCCTT 13×CCTT***
16520992-CAAA-C 14409112-CAAA-C 16×A***
10986725-G-C ***
10925496-C-CTCCATTCCAT ***
18760242-TTCTCTCTC-T 16648362-TTCTCTCTC-T 27×TC***
6856706-CATAA-C 6988665-CATAA-C 8×ATAA***
2783734-CAA-C,CA 2915693-CAA-C,CA 15×A***
7106982-GCTCTCT-G,GCT 7238941-GCTCTCT-G,GCT 15×CT***
16719967-T-G 14608087-T-G ***
11030144-C-T ***
22236054-C-T 20074168-C-T DYZ19 ***
19436762-GAGAGAA-G,GAGAA 17324882-GAGAGAA-G,GAGAA ***
9371457-CATATATATATAT-C,CAT 9533848-CATATATATATAT-C,CAT 22×AT***
10845645-C-T ***
21754216-G-T ***
10666989-C-T ***
3620738-C-A 3752697-C-A ***
13857258-A-T 11736552-A-T ***
22464230-A-T 20302344-A-T DYZ19 ***
22441685-C-T 20279799-C-T DYZ19 ***
22236068-C-A 20074182-C-A DYZ19 ***
22236038-CAT-C 20074152-CAT-C DYZ19 ***
10807268-C-T ***
9908184-G-T 10070575-G-T ***
22172451-G-T 20010565-G-T ***
3165165-G-T 3297124-G-T ***
10653097-GCATTCCATTCCGTTC-G,GCATTCCATTCCATTC ***
21750896-G-T ***
10673941-TGCACC-T,TGCACA ***
4223033-CA-C 4354992-CA-C ***
10693228-A-C,T ***
10693241-C-T ***
7646416-TAA-T 7778375-TAA-T 14×A***
11672692-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2642331025639383008028129735
Used in age calculations1025639383008028129735
Counts of SNPs8373
Variant counts last updated 2018-08-10 21:59:46.



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