Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > DF90 > FGC14641 > ~22237861-G-A > FGC59581

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
362045
BigY2
362045
18368634-T-TTG 16256754-T-TTG P6_Prx 17×TGA*
13687769-A-C 11532093-A-C DYZ17 A*
5349961-G-A 5481920-G-A FT132998 A*
28817895-T-A 26671748-T-A A*
19719399-T-C 17607519-T-C P5_Prx A*A*
20643042-T-A 18481156-T-A P4_Prx A*A*
25879866-T-C 23733719-T-C P1_Y1 A*A*
25957285-G-A 23811138-G-A P1_Y1 A*A*
26389116-G-A 24242969-G-A P1_Y1 A*A*
28817026-G-A 26670879-G-A A*A*
9361295-C-T 9523686-C-T 4540516-T-CBY34442 YA*
16097564-A-C 13985684-A-C P8_Prx A*
19643700-C-T 17531820-C-T P5_Prx A*
20536078-G-A 18374192-G-A P5_Dst A*
13862123-A-G 11741417-A-G BY50613 DYZ17 ++
10872962-T-C FT434945 +
6040238-G-A 6172197-G-A FT97810 +**
7209050-G-C 7341009-G-C BY63917 YY++
8665842-C-T 8797801-C-T BY75051 YY++
8969909-C-A 9132300-C-A BY76959 **+
9838718-C-T 10001109-C-T BY81330 YY++
13224460-T-C 11068784-T-C BY84636 ++
13572748-C-T 11417072-C-T FT445581 +**
13670214-C-T 11514538-C-T BY87781 DYZ17 ++
13670627-C-G 11514951-C-G FT447816 DYZ17 ++
14469839-GT-G 12349108-GT-G **+
14515985-TAAAC-T 12404186-TAAAC-T ++
14818691-A-G 12706762-A-G BY97766 YY++
15441380-T-C 13329500-T-C BY101598 YY++
15456139-T-C 13344259-T-C BY101674 YY++
15513802-T-G 13401922-T-G BY102118 YY++
16733728-T-C 14621848-T-C FT98232 YY+**
16770380-AC-A 14658500-AC-A ++
16858278-T-C 14746398-T-C BY110628 YY++
17367428-G-A 15255548-G-A BY114234 YY++
17871408-T-C 15759528-T-C BY117967 YY++
18225475-T-C 16113595-T-C BY55063 Y++
19093455-T-C 16981575-T-C BY126195 YY++
19415185-A-T 17303305-A-T FT98427 YY+**
20828972-T-C 18667086-T-C BY212705 P4_Gap ++
21207025-C-T 19045139-C-T FT98444 YY+**
21262083-C-T 19100197-C-T BY131549 YY++
21480171-C-A 19318285-C-A BY133225 YY++
21485370-C-T 19323484-C-T BY133301 YY++
22228556-A-G 20066670-A-G BY213221 DYZ19 ++
22443335-C-G 20281449-C-G BY219229 DYZ19 **+
22489275-A-T 20327389-A-T BY225067 DYZ19 +
22858044-G-A 20696158-G-A BY141262 YY++
23024952-C-A 20863066-C-A BY142389 YY++
23987542-C-A 21841395-C-A BY149049 Y++
12361-C-T **+
3619411-G-A 3751370-G-A FT97523 +
4384582-G-GA 4516541-G-GA +
5706866-C-G 5838825-C-G FT97769 +
7630807-C-T 7762766-C-T FT97900 Y+
10667065-A-G FT428681 +
13583395-A-T 11427719-A-T FT445813 +
15988072-G-A 13876192-G-A FT98179 YY+
3413677-G-T 3545636-G-T *
13455805-A-G 11300129-A-G BY85446 *
22279347-G-C 20117461-G-C DYZ19 *
22279348-C-A 20117462-C-A DYZ19 *
22316679-A-T 20154793-A-T DYZ19 *
4446690-G-GA 4578649-G-GA 9×A*
10687334-A-G *
58819703-C-A 56771168-G-T **
8085516-C-CT 8217475-C-CT 19×T**
22297891-G-A 20136005-G-A DYZ19 **
8057337-C-T 8189296-C-T FT310920 **
16084176-C-A 13972296-C-A FGC78622 **
16101327-ATCTC-A 13989447-ATCTC-A P8_Prx 13×TC**
20340126-C-T 18178240-C-T P5_Dst **
24245716-A-T 22099569-A-T FGC42958 P3_b1 **
24245661-A-T 22099514-A-T FGC51267 P3_b1 **
15179986-C-CAA 13068072-C-CAA 15×A**
5426382-C-A 5558341-C-A **
10940338-C-G **
11001836-A-G **
11001851-A-C **
10771935-T-C **
13372061-C-A 11216385-C-A **
14743709-C-A 12631778-C-A **
10684994-C-T **
10685003-T-A **
16860782-AAG-A 14748902-AAG-A **
10671019-T-C **
18687719-C-CA 16575839-C-CA **
10670969-T-G **
10925486-T-A **
11671400-GGAATC-G DYZ17 **
10925555-G-T **
24518004-C-A 22371857-C-A **
10982920-C-A **
15423176-G-T 13311296-G-T **
10770590-C-T **
5458510-C-A 5590469-C-A **
6332662-AC-A 6464621-AC-A IR3_Dst **
4919396-G-T 5051355-G-T **
20340112-T-G 18178226-T-G P5_Dst **
28483573-C-A 26337426-C-A **
18901112-C-A 16789232-C-A **
20711549-T-TG 18549663-T-TG P4_Prx **
3093790-G-C 3225749-G-C **
3093798-T-G 3225757-T-G **
13884210-A-C 11763504-A-C **
17597956-T-A 15486076-T-A **
18955857-T-TA 16843977-T-TA 10×A**
28558920-C-A 26412773-C-A **
28658426-C-A 26512279-C-A **
27398546-G-A 25252399-G-A P1_g3 **
28006374-AC-A 25860227-AC-A P1_Y2 **
56771164-G-T **
10994249-G-A **
3109107-G-T 3241066-G-T **
11022088-C-T **
21306615-AAAG-A 19144729-AAAG-A **
8351581-C-A 8483540-C-A **
10805827-T-G **
20404507-C-A 18242621-C-A P5_Dst **
10895860-C-T **
20635015-G-T 18473129-G-T P4_Prx **
11035311-T-C **
10653108-C-T **
15189656-T-G 13077742-T-G **
6693059-C-A 6825018-C-A **
10970734-T-G **
4229428-A-T 4361387-A-T **
13257552-A-C 11101876-A-C **
11669301-C-A DYZ17 **
5828974-C-A 5960933-C-A **
7044212-G-T 7176171-G-T **
19290508-C-G 17178628-C-G **
28147146-A-T 26000999-A-T P1_b4 **
28147150-A-T 26001003-A-T P1_b4 **
19847692-C-A 17735812-C-A P5_Prx **
11038179-A-CTGCTC **
2730110-C-T 2862069-C-T **
3407905-C-A 3539864-C-A **
22949878-C-A 20787992-C-A 23×T**
8969529-G-T 9131920-G-T **
21426975-G-T 19265089-G-T **
17128535-CTTTT-C 15016655-CTTTT-C 25×T**
11022104-T-A **
11022130-C-CTG **
11022131-CAT-C **
28585774-C-A 26439627-C-A **
10895789-T-G **
14512005-G-T 12400210-G-T **
10771879-C-T **
13209439-C-A 11053763-C-A **
10992866-C-A FT439529 **
17143888-C-A 15032008-C-A **
22176203-C-A 20014317-C-A **
4178814-C-A 4310773-C-A **
14226587-C-A 12105881-C-A **
10926719-A-G **
10677841-C-A **
10884721-C-A **
16048873-C-A 13936993-C-A **
10685316-C-A **
13456923-TTTCCA-T 11301247-TTTCCA-T **
10754986-C-T **
56838593-C-A **
7704809-C-A 7836768-C-A **
10999949-C-G **
4700407-C-A 4832366-C-A **
6275752-A-T 6407711-A-T IR3_Dst **
20340114-A-T 18178228-A-T P5_Dst **
26228716-TGAG-T 24082569-TGAG-T P1_Y1 **
11001852-A-T **
4437862-C-A 4569821-C-A **
15881884-A-C 13770004-A-C **
8854301-C-A 8986260-C-A **
19271542-C-A 17159662-C-A **
16095227-G-T 13983347-G-T **
3721465-C-A 3853424-C-A **
13941664-A-T 11820958-A-T **
4502899-G-T 4634858-G-T **
11035274-T-C **
28147148-G-T 26001001-G-T P1_b4 **
14074089-C-A 11953383-C-A **
2970082-C-A 3102041-C-A **
10771872-G-A **
16520847-G-T 14408967-G-T **
28521651-C-G 26375504-C-G **
10785695-C-A **
15557995-C-A 13446115-C-A **
22273562-C-A 20111676-C-A DYZ19 **
10657244-C-A **
7107576-C-A 7239535-C-A **
15355089-C-A 13243208-C-A **
10677095-G-A **
4133346-C-A 4265305-C-A **
56823102-G-T **
5674617-C-A 5806576-C-A **
11038160-C-A **
11038174-C-T **
23807575-TCTC-T 21645689-TCTC-T **
4804669-C-A 4936628-C-A **
9416869-C-A 9579260-C-A **
56840160-G-T **
10657424-C-A **
10660720-C-A **
15541698-AT-A 13429818-AT-A **
10775461-C-A **
10964597-C-A **
4174972-T-A 4306931-T-A **
24363885-C-A 22217738-C-A **
10991546-G-T **
17597947-T-A 15486067-T-A **
7102458-C-A 7234417-C-A **
2785284-TTTTTCAGCAGTGTATTGTAGTTTTCCTTGTAGAGATC-T 2917243-TTTTTCAGCAGTGTATTGTAGTTTTCCTTGTAGAGATC-T **
2966474-T-A 3098433-T-A **
3079457-C-A 3211416-C-A **
3176448-A-T 3308407-A-T **
3235405-C-A 3367364-C-A **
3276202-C-A 3408161-C-A **
3550349-G-A 3682308-G-A **
3641391-C-A 3773350-C-A **
3951538-T-G 4083497-T-G **
4077607-C-A 4209566-C-A **
4113069-C-A 4245028-C-A **
4136167-C-A 4268126-C-A **
4142334-G-A 4274293-G-A **
4201671-C-A 4333630-C-A **
4201752-C-A 4333711-C-A **
4202359-A-G 4334318-A-G **
4334599-G-T 4466558-G-T **
4416677-G-T 4548636-G-T **
4426089-A-C 4558048-A-C **
4465202-A-G 4597161-A-G **
4521492-A-C 4653451-A-C **
4792375-T-G 4924334-T-G **
4908137-C-T 5040096-C-T **
4959907-C-A 5091866-C-A **
5017561-G-T 5149520-G-T **
5017670-T-C 5149629-T-C **
5035364-T-A 5167323-T-A **
5060182-C-A 5192141-C-A **
5200266-A-C 5332225-A-C **
5446287-T-A 5578246-T-A **
5449980-T-A 5581939-T-A **
5513111-C-A 5645070-C-A **
5606154-C-A 5738113-C-A **
5716008-T-C 5847967-T-C **
5716239-A-T 5848198-A-T **
5720884-T-A 5852843-T-A **
5824753-C-T 5956712-C-T FT93803 **
6156669-A-T 6288628-A-T IR3_Dst **
6156690-C-G 6288649-C-G IR3_Dst **
6156704-A-T 6288663-A-T IR3_Dst **
6156705-A-T 6288664-A-T IR3_Dst **
6156711-A-T 6288670-A-T IR3_Dst **
6156728-A-T 6288687-A-T IR3_Dst **
6202168-G-T 6334127-G-T IR3_Dst **
6245756-C-A 6377715-C-A IR3_Dst **
6275751-A-T 6407710-A-T IR3_Dst **
6275766-A-T 6407725-A-T IR3_Dst **
6275777-C-G 6407736-C-G IR3_Dst **
6275782-G-T 6407741-G-T IR3_Dst **
6275787-A-T 6407746-A-T IR3_Dst **
6275801-A-T 6407760-A-T IR3_Dst **
6339208-G-T 6471167-G-T IR3_Dst **
6339219-C-A 6471178-C-A IR3_Dst **
6339221-T-A 6471180-T-A IR3_Dst **
6339231-T-A 6471190-T-A IR3_Dst **
6339241-T-A 6471200-T-A IR3_Dst **
6339248-T-A 6471207-T-A IR3_Dst **
6339263-T-A 6471222-T-A IR3_Dst **
6535360-C-A 6667319-C-A **
6634277-T-A 6766236-T-A **
6682205-C-A 6814164-C-A **
6748677-A-T 6880636-A-T **
6790490-G-T 6922449-G-T **
6978381-C-G 7110340-C-G **
7040287-G-T 7172246-G-T **
7045149-G-T 7177108-G-T **
7142275-C-A 7274234-C-A **
7159111-C-A 7291070-C-A **
7202216-C-A 7334175-C-A **
7236471-T-G 7368430-T-G **
7253942-T-C 7385901-T-C **
7319290-C-A 7451249-C-A **
7360567-T-C 7492526-T-C 13×A**
7409488-A-T 7541447-A-T **
7990374-C-T 8122333-C-T **
8842335-G-T 8974294-G-T **
9055263-G-T **
9416851-A-T 9579242-A-T **
9438093-CTTTCTCT-C 9600484-CTTTCTCT-C **
9670362-A-T 9832753-A-T IR3_Prx **
9670378-A-T 9832769-A-T IR3_Prx **
9670385-A-T 9832776-A-T IR3_Prx **
9670391-A-T 9832782-A-T IR3_Prx **
9670392-A-T 9832783-A-T IR3_Prx **
9764190-C-T 9926581-C-T **
9826025-C-G 9988416-C-G **
9826047-A-T 9988438-A-T **
9928437-C-A 10090828-C-A **
10039908-C-A 10202299-C-A **
10651573-C-A **
10653407-C-A **
10654374-T-G **
10661139-C-A **
10665893-C-A **
10678096-G-T **
10684766-C-A **
10685006-C-G **
10747592-T-C **
10757239-C-A **
10771920-C-T **
10789139-CCATT-C **
10790233-C-A **
10803517-T-C **
10804837-T-G **
10808948-C-A **
10821767-C-A **
10835101-C-G **
10841081-C-A **
10841646-C-A **
10842435-C-A **
10860712-T-G **
10866024-T-G **
10866238-CTTCCATTCCATTCCATTCCATTCCATTCCACTCCA-C **
10868813-C-T **
10899500-G-T **
10913049-C-A **
10914299-A-G FT272261 **
10925593-C-A **
10925593-CTGTTCCATACTG-C **
10925608-CCGT-C **
10929698-A-T **
10939739-C-A **
10949825-T-C **
10950923-C-G **
10951726-A-G **
10974235-T-G **
10974419-C-A **
10977083-C-A **
10986511-C-A **
10986654-N-C **
10992877-C-A **
10992895-C-A **
10995892-C-A **
10998767-T-A **
11004393-GCCATTCCATTCCATTCCATTCCATTCCATT-G **
11019921-A-T **
11020266-TC-T **
11035263-A-C **
11035270-T-A **
11035276-C-G **
13194787-C-G 11039111-C-G **
13234619-C-G 11078943-C-G **
13238240-A-G 11082564-A-G **
13258717-G-A 11103041-G-A **
13696504-G-T 11540828-G-T DYZ17 **
13704698-G-T 11549022-G-T DYZ17 **
11646531-C-A DYZ17 **
11646627-G-T FT165092 DYZ17 **
13857713-C-A 11737007-C-A FTB55062 DYZ17 **
13880017-C-A 11759311-C-A **
13961809-C-A 11841103-C-A **
14079664-A-T 11958958-A-T **
14283630-G-T 12162924-G-T **
14284678-C-A 12163972-C-A **
14285796-C-A 12165090-C-A **
14339168-C-A 12218463-C-A **
14546761-A-T 12434962-A-T **
14620948-C-A 12509146-C-A **
14639226-A-C 12527295-A-C **
14721567-T-C 12609635-T-C **
14741639-C-A 12629707-C-A **
14743021-G-C 12631089-G-C **
14788770-C-A 12676841-C-A **
14815994-C-A 12704065-C-A **
14994102-A-G 12882187-A-G **
15210847-A-T 13098933-A-T **
15370802-C-A 13258922-C-A **
15370862-G-T 13258982-G-T **
15394419-G-T 13282539-G-T **
15394482-C-A 13282602-C-A FT143826 **
15397813-A-T 13285933-A-T **
15435239-G-T 13323359-G-T **
15650454-C-A 13538574-C-A **
15677345-A-T 13565465-A-T **
15864107-A-T 13752227-A-T **
15921852-T-C 13809972-T-C **
15922461-G-A 13810581-G-A **
16008755-C-A 13896875-C-A **
16013740-G-T 13901860-G-T **
16028316-T-G 13916436-T-G **
16060465-C-A 13948585-C-A **
16320432-T-A 14208552-T-A **
16603318-C-A 14491438-C-A **
16654714-C-A 14542834-C-A **
16701807-G-A 14589927-G-A FGC35119 **
16881634-C-A 14769754-C-A **
16884005-G-T 14772125-G-T **
17142133-T-C 15030253-T-C **
17215850-C-A 15103970-C-A **
17215908-T-G 15104028-T-G **
17250232-G-T 15138352-G-T **
17380762-G-T 15268882-G-T **
17492278-G-T 15380398-G-T **
17504054-G-T 15392174-G-T **
17538083-T-A 15426203-T-A **
17547668-C-A 15435788-C-A **
17597950-C-A 15486070-C-A **
17666707-C-A 15554827-C-A **
17783064-G-T 15671184-G-T **
17867507-A-C 15755627-A-C **
17876242-C-A 15764362-C-A **
18088407-T-G 15976527-T-G **
18088409-T-G 15976529-T-G **
18093958-G-T 15982078-G-T **
18309886-A-T 16198006-A-T P6_Prx **
18309898-C-A 16198018-C-A P6_Prx **
18343567-G-T 16231687-G-T P6_Prx **
18407034-A-G 16295154-A-G P6_Gap **
18596392-C-A 16484512-C-A **
18627639-C-A 16515759-C-A **
18743344-C-T 16631464-C-T **
18756185-G-T 16644305-G-T **
19121993-C-A 17010113-C-A **
19128659-T-C 17016779-T-C **
19302128-C-A 17190248-C-A **
19358114-C-A 17246234-C-A **
19507062-T-A 17395182-T-A **
19598783-A-C 17486903-A-C P5_Prx **
19600448-TA-T 17488568-TA-T P5_Prx **
19623503-A-G 17511623-A-G P5_Prx **
19724583-T-A 17612703-T-A P5_Prx **
19724590-T-A 17612710-T-A P5_Prx **
19724595-T-A 17612715-T-A P5_Prx **
19724622-T-A 17612742-T-A P5_Prx **
19855478-C-A 17743598-C-A P5_Prx **
19855482-A-T 17743602-A-T P5_Prx **
19926886-G-T 17815006-G-T P5_Prx **
19965495-C-A 17853615-C-A P5_Prx **
20255076-T-A 18093190-T-A P5_Dst **
20255115-T-A 18093229-T-A P5_Dst **
20330532-A-G 18168646-A-G P5_Dst **
20340119-T-C 18178233-T-C P5_Dst **
20340124-T-G 18178238-T-G P5_Dst **
20473366-G-T 18311480-G-T P5_Dst **
20621489-T-A 18459603-T-A P4_Prx **
20621500-G-T 18459614-G-T P4_Prx **
20621511-T-A 18459625-T-A P4_Prx **
20621517-G-T 18459631-G-T P4_Prx **
20621529-C-A 18459643-C-A P4_Prx **
20621537-T-A 18459651-T-A P4_Prx **
20621539-T-A 18459653-T-A P4_Prx **
20621542-G-C 18459656-G-C P4_Prx **
20621547-T-A 18459661-T-A P4_Prx **
20621555-C-A 18459669-C-A P4_Prx **
20634996-A-T 18473110-A-T P4_Prx **
20635013-A-T 18473127-A-T P4_Prx **
21164684-C-A 19002798-C-A **
21207566-T-G 19045680-T-G **
21363162-A-G 19201276-A-G **
21380623-G-T 19218737-G-T **
21796551-G-A 19634665-G-A F24700 **
22065185-A-G 19903299-A-G **
22155455-A-T 19993569-A-T **
22297888-A-G 20136002-A-G DYZ19 **
22297895-C-A 20136009-C-A Z45910 DYZ19 **
22297899-C-T 20136013-C-T DYZ19 **
22297903-T-A 20136017-T-A DYZ19 **
22485561-T-C 20323675-T-C DYZ19 **
22765516-G-T 20603630-G-T **
22834007-C-A 20672121-C-A **
23006592-C-A 20844706-C-A **
23144236-C-A 20982350-C-A **
23361676-T-A 21199790-T-A **
23415342-A-ATT 21253456-A-ATT 21×T**
23723598-T-G 21561712-T-G **
23818418-G-T 21656532-G-T **
24072724-C-A 21926577-C-A P3_b1 **
24072725-T-A 21926578-T-A P3_b1 **
24245654-G-T 22099507-G-T P3_b1 **
24245677-G-T 22099530-G-T P3_b1 **
24245693-A-T 22099546-A-T P3_b1 **
24245698-G-T 22099551-G-T P3_b1 **
24245722-A-T 22099575-A-T P3_b1 **
24245723-A-T 22099576-A-T P3_b1 **
24245726-C-G 22099579-C-G P3_b1 **
24296129-T-G 22149982-T-G P3_t1 **
24363754-C-A 22217607-C-A **
24392028-A-C 22245881-A-C ****
24392029-AAGTACTTACAACACTTGGCCC-A 22245882-AAGTACTTACAACACTTGGCCC-A ****
24404318-C-A 22258171-C-A **
24450532-T-C 22304385-T-C **
24582483-A-C 22436336-A-C P3_t2 **
24892497-G-T 22746350-G-T g1 **
25966160-A-C 23820013-A-C P1_Y1 **
25966170-T-G 23820023-T-G P1_Y1 **
25966177-T-G 23820030-T-G P1_Y1 **
25988495-C-A 23842348-C-A P1_Y1 **
26085532-A-G 23939385-A-G P1_Y1 **
26199717-A-T 24053570-A-T P1_Y1 **
26199724-C-A 24053577-C-A P1_Y1 **
26199739-G-T 24053592-G-T P1_Y1 **
26320961-C-A 24174814-C-A P1_Y1 **
27155037-T-G 25008890-T-G P1_g3 **
27810333-GAAGG-T 25664186-GAAGG-T P1_Y2 **
27828710-AAAAAAC-A 25682563-AAAAAAC-A P1_Y2 **
27876645-A-T 25730498-A-T P1_Y2 **
27876661-A-T 25730514-A-T P1_Y2 **
27876662-A-T 25730515-A-T P1_Y2 **
27876666-G-T 25730519-G-T P1_Y2 **
27876680-A-T 25730533-A-T P1_Y2 **
28102336-T-A 25956189-T-A P1_Y2 **
28102357-G-T 25956210-G-T P1_Y2 **
28147137-A-T 26000990-A-T P1_b4 **
28511061-C-A 26364914-C-A **
28535644-T-G 26389497-T-G **
28583665-C-A 26437518-C-A **
28588106-C-A 26441959-C-A **
28606081-C-A 26459934-C-A **
28625849-T-G 26479702-T-G **
28754990-C-A 26608843-C-A **
28776141-C-A 26629994-C-A **
28798184-A-C 26652037-A-C **
28814951-G-T 26668804-G-T **
56678118-G-C **
56771208-G-T **
56771215-A-T **
56771216-G-T **
56839695-A-C **
56845342-A-G **
56846528-G-T **
56854792-C-G **
9524106-C-T 9686497-C-T **
20775186-G-A 18613300-G-A P4_Prx **
3452154-C-T 3584113-C-T **
3543166-C-CAA 3675125-C-CAA 14×A**
3889019-CTTTT-C 4020978-CTTTT-C 15×T**
3901399-C-T 4033358-C-T **
5667411-G-GT 5799370-G-GT **
5701369-C-T 5833328-C-T **
9830370-T-C 9992761-T-C **
13485357-A-C 11329681-A-C **
14682883-G-A 12570949-G-A **
22480617-T-G 20318731-T-G DYZ19 **
24267556-G-T 22121409-G-T P3_b1 **
28076194-T-C 25930047-T-C P1_Y2 **
28569533-A-G 26423386-A-G **
7867879-G-GGAAAGAAAGAAAGAAA 7999838-G-GGAAAGAAAGAAAGAAA 16×GAAA***
8154134-C-CTT 8286093-C-CTT 16×T***
14847004-CAAAAAA-C 12735070-CAAAAAA-C 20×A***
7935855-TAAA-T 8067814-TAAA-T 22×A***
7414277-CAAA-C 7546236-CAAA-C 27×A***
2741101-CTT-C,CT 2873060-CTT-C,CT 19×T***
10999865-A-G ***
10999867-T-A ***
13884911-C-A 11764205-C-A ***
22951102-CT-C,CTT 20789216-CT-C,CTT 13×T***
10776137-CTCAAT-C ***
10887980-T-C ***
13485585-C-A 11329909-C-A ***
16288185-ATTT-A 14176305-ATTT-A 16×T***
8016922-C-A 8148881-C-A ***
8016924-C-A 8148883-C-A 8×T***
10887994-C-A ***
10878321-C-A ***
16598984-CAAAAAA-C 14487104-CAAAAAA-C 25×A***
10842489-T-C ***
10842508-T-A ***
19422051-C-A 17310171-C-A ***
19050375-CTTT-C 16938495-CTTT-C 18×T***
10808573-T-C ***
22127975-CTTTTTT-C 19966089-CTTTTTT-C 20×T***
16264562-C-A 14152682-C-A ***
28722411-C-A 26576264-C-A ***
14316186-CT-C,CTT 12195480-CT-C,CTT 14×T***
10878271-T-C ***
10878297-T-C ***
10878311-C-T ***
19302619-G-T 17190739-G-T ***
10755392-A-C,CGT ***
10664802-T-C ***
21946945-A-ATT 19785059-A-ATT 15×T***
21950228-C-A 19788342-C-A ***
17703236-TAAAA-T 15591356-TAAAA-T 22×A***
22815505-G-GTT 20653619-G-GTT 20×T***
16545414-CAAAAAAAA-C 14433534-CAAAAAAAA-C 24×A***
23623200-G-T 21461314-G-T ***
14415573-A-AAT 12294870-A-AAT ***
14697129-C-A 12585195-C-A ***
8095379-T-C 8227338-T-C ***
2740548-G-T 2872507-G-T ***
2986322-C-A 3118281-C-A ***
5534908-C-A 5666867-C-A ***
7537655-C-A 7669614-C-A ***
8124888-C-A 8256847-C-A ***
8481967-TA-T,TAA 8613926-TA-T,TAA 15×A***
8751094-A-G 8883053-A-G ***
9499465-G-T 9661856-G-T ***
9945377-A-G 10107768-A-G ***
10768025-C-T ***
10797541-C-A ***
11016383-A-G ***
11022824-C-A ***
13482577-C-A 11326901-C-A ***
11656491-C-A DYZ17 ***
14144239-C-A 12023533-C-A ***
14488533-A-G 12367802-A-G ***
15041044-C-A 12929134-C-A ***
17030992-CAAAAA-C,CAAAA 14919112-CAAAAA-C,CAAAA 19×A***
18176570-C-A 16064690-C-A ***
18949688-C-A 16837808-C-A ***
18951759-T-C 16839879-T-C ***
18953051-G-A 16841171-G-A ***
19844880-G-T 17733000-G-T P5_Prx ***
21253814-G-T 19091928-G-T ***
28640584-C-A 26494437-C-A ***
56834983-C-T ***
10789893-CTTCCATTCCA-C ***
25720380-GA-G 23574233-GA-G P1_b3 9×A***
24886464-CAA-C 22740317-CAA-C g1 13×A***
10691173-A-T ***
21134925-AT-A,ATT 18973039-AT-A,ATT 22×T***
6786911-ATTT-A,AT 6918870-ATTT-A,AT 17×T***
6816713-CAA-C,CA 6948672-CAA-C,CA 19×A***
13950947-CTTT-C,CT 11830241-CTTT-C,CT 23×T***
3490345-C-T 3622304-C-T ***
5218706-C-A 5350665-C-A ***
7646928-A-AT 7778887-A-AT 11×AT***
7713479-C-G 7845438-C-G ***
10866238-CTTCCATTCCATTCCATTCCATTCCATTCCACTCCA-C,CTTCCATTCCATTCCATTCCATTCCACACCACTCCC ***
13299266-G-T 11143590-G-T ***
13522567-T-A 11366891-T-A ***
22476498-T-C 20314612-T-C DYZ19 ***
28566034-C-T 26419887-C-T ***
56828244-C-A ***
56861838-ACCTG-A,ACCTA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.