Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > S5488 > Z16294 > BY11121 > ZZ21 > FGC63891 > FGC72518

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
5911040-A-AT 6042999-A-AT 9×TA*
14486413-A-G 12365682-A-G Y133674 YY+**
4580224-G-T 4712183-G-T FGC72514 ++
21154803-G-C 18992917-G-C FGC72526 Y133695 Y++
18491804-A-G 16379924-A-G FGC72525 A20826 P6_Dst *
13459100-C-T 11303424-C-T **
18795286-G-T 16683406-G-T **
5078103-AAAAT-A 5210062-AAAAT-A 4×AAAT**
13459112-G-T 11303436-G-T **
7338827-C-T 7470786-C-T **
27417760-TTA-T 25271613-TTA-T P1_g3 24×TA**
15278821-T-TTTATA 13166915-T-. 6×TTATA**
25108853-G-T 22962706-G-T g1 **
23398944-A-G 21237058-A-G **
13476533-A-T 11320857-A-T **
19487511-T-C 17375631-T-C **
9409771-C-T 9572162-C-T **
13566948-CAT-C 11411272-CAT-C 12×AT**
7121947-C-T 7253906-C-T **
5067334-C-CTT 5199293-C-CTT 13×T**
2688624-T-A 2820583-T-A **
5465432-GTA-G 5597391-GTA-G **
10058035-G-A 10220426-G-A **
28478038-T-TAG 26331891-T-TAG 23×AG**
13459120-C-ATATAA 11303444-C-ATATAA **
21945072-A-G 19783186-A-G **
15301382-A-G 13189481-A-G **
18969966-C-T 16858086-C-T **
18969964-C-T 16858084-C-T **
14574801-G-A 12463001-G-A **
3967340-G-A 4099299-G-A **
13459155-C-T 11303479-C-T **
13459148-T-TTCGGTTTGAA 11303472-T-TTCGGTTTGAA **
15278736-T-TTTATA 13166825-T-TTTATA 6×TTATA**
13459089-TGCATTC-T 11303413-TGCATTC-T **
3902916-A-T 4034875-A-T **
13346776-C-CAA 11191100-C-CAA 13×A**
7886454-A-G 8018413-A-G **
13459065-C-G 11303389-C-G **
25095360-T-A 22949213-T-A g1 ***
22490114-G-T 20328228-G-T DYZ19 ***
22510246-C-T 20348360-C-T DYZ19 ***
24170059-C-A 22023912-C-A P3_b1 ***
24182138-C-G 22035991-C-G P3_b1 ***
22530873-A-G 20368987-A-G ***
22479822-T-C 20317936-T-C DYZ19 ***
23004520-G-A 20842634-G-A ***
22757475-A-G 20595589-A-G ***
23048447-C-T 20886561-C-T ***
23104228-C-T 20942342-C-T ***
23290684-A-C 21128798-A-C ***
24928360-C-A 22782213-C-A g1 ***
24895624-G-T 22749477-G-T g1 ***
24278333-A-G 22132186-A-G P3_b1 ***
25004912-A-G 22858765-A-G g1 ***
19376202-T-A 17264322-T-A ***
22424018-G-T 20262132-G-T DYZ19 ***
18875182-A-C 16763302-A-C ***
14738853-C-A 12626921-C-A ***
15636909-G-T 13525029-G-T ***
16829193-G-A 14717313-G-A ***
16999809-A-G 14887929-A-G ***
17164962-C-T 15053082-C-T ***
17324176-G-A 15212296-G-A ***
17796230-C-A 15684350-C-A ***
17797873-A-G 15685993-A-G ***
17858253-T-A 15746373-T-A ***
18135538-G-C 16023658-G-C ***
19376186-G-A 17264306-G-A ***
22349313-C-A 20187427-C-A DYZ19 ***
19376193-A-G 17264313-A-G ***
26024375-C-A 23878228-C-A P1_Y1 ***
19884944-T-A 17773064-T-A P5_Prx ***
20025822-A-T 17913942-A-T P5_Prx ***
20892325-G-T 18730439-G-T P4_Dst 11×A***
21068479-T-A 18906593-T-A ***
21394225-A-G 19232339-A-G ***
21474458-C-G 19312572-C-G ***
21949334-G-T 19787448-G-T ***
22348224-A-T 20186338-A-T DYZ19 ***
25606787-G-A 23460640-G-A P1_gr1 ***
58890935-C-A 56699936-G-T ***
26455400-T-C 24309253-T-C P1_Y1 ***
15931650-G-C 13819770-G-C ***
58978641-CCGCA-GTGCG 56832494-CCGCA-GTGCG ***
59007975-AA-G 56861828-AA-G ***
13459284-T-C 11303608-T-C ***
5268742-TAA-T,TA 5400701-TAA-T,TA 19×A***
14796003-T-G 12684074-T-G ***
7338823-A-G 7470782-A-G ***
7338825-T-A 7470784-T-A ***
3483637-GACACAC-G 3615596-GACACAC-G 15×AC***
17946919-GTTTT-G 15835039-GTTTT-G 24×T***
22366298-CAT-GAG 20204412-CAT-GAG DYZ19 ***
2960016-G-A 3091975-G-A ***
4466823-CTT-C 4598782-CTT-C ***
5448935-T-C 5580894-T-C ***
5514702-A-T 5646661-A-T ***
9114291-C-T ***
14882342-CAA-C 12770408-CAA-C 11×A***
15192549-AT-A 13080635-AT-A ***
15215645-C-T 13103731-C-T ***
17300164-T-C 15188284-T-C ***
21624994-A-C 19463108-A-C ***
22263239-G-C 20101353-G-C DYZ19 ***
27791977-TCTG-GCTT 25645830-TCTG-GCTT P1_Y2 ***
16601600-CA-C 14489720-CA-C 31×A***
26794640-T-C 24648493-T-C P1_g2 ***
58893740-A-G 56697131-T-C ***
27417945-G-A 25271798-G-A P1_g3 ***
27453874-C-T 25307727-C-T P1_Y2 ***
27873379-G-C 25727232-G-C P1_Y2 ***
28120823-C-T 25974676-C-T P1_b4 ***
28353217-C-T 26207070-C-T P1_gr2 ***
28397171-T-A 26251024-T-A P1_gr2 ***
28786390-G-A 26640243-G-A ***
58833754-A-T 56757117-T-A ***
58837700-T-C 56753171-A-G ***
58858793-T-A 56732078-A-T ***
58890933-T-C 56699938-A-G ***
58893796-A-G 56697075-T-C ***
13950947-CTTTTTT-C 11830241-CTTTTTT-C 23×T***
58893797-T-C 56697074-A-G ***
58972695-G-C 56826548-G-C ***
59015758-A-C 56869611-A-C ***
4826400-T-TTATATA 4958359-T-TTATATA 22×TA***
5235847-T-TAC 5367806-T-TAC 11×AC***
6440991-TAAAA-T 6572950-TAAAA-T 19×A***
8644324-CAAAAAAAAA-C 8776283-CAAAAAAAAA-C 32×A***
13194676-AAGC-GAGT 11039000-AAGC-GAGT ***
13270288-A-ATTTT 11114612-A-ATTTT 10×T***
13452374-TTC-CTG 11296698-TTC-CTG ***
13661295-G-GGAATA 11505619-G-GGAATA ***
14661667-A-T 12549732-A-T ***
22477925-T-G 20316039-T-G BY25211 DYZ19 ***
14514312-G-A 12402517-G-A ***
5937240-CTC-ATA 6069199-CTC-ATA ***
22355095-T-C 20193209-T-C DYZ19 ***
5354713-CATAT-C 5486672-CATAT-C 16×AT***
13661294-T-TGGAAG 11505618-T-TGGAAG ***
4763450-C-A 4895409-C-A ***
15037752-A-AAC 12925840-A-AAC ***
13141868-T-A 10631354-T-A ***
13730459-TCATC-GCATG 11574783-TCATC-GCATG ***
28786378-C-T 26640231-C-T FGC50529 5×GGAAT***
58842951-A-G 56747920-T-C ***
58843019-C-A 56747852-G-T ***
3822962-G-GATATAT 3954921-G-GATATAT 26×AT***
8407603-G-GT 8539562-G-GT ***
25160616-C-T 23014469-C-T BY18102 g1 ***
13141035-T-A 10630521-T-A ***
13452356-CCAT-GTAC 11296680-CCAT-GTAC ***
6359095-CAA-C 6491054-CAA-C 30×A***
28786378-CGG-TGA 26640231-CGG-TGA 5×GGAAT***
13446484-TG-CA 11290808-TG-CA ***
13142903-C-T 10632389-C-T ***
13142920-ACACAATTCCT-A 10632406-ACACAATTCCT-A ***
59020166-ACA-GCG 56874019-ACA-GCG ***
3786768-T-G 3918727-T-G ***
58891018-T-C 56699853-A-G ***
58891025-C-G 56699846-G-C ***
24771118-G-T 22624971-G-T P3_b2 ***
25207898-T-A 23061751-T-A P2_r1 ***
9977384-C-T 10139775-C-T ***
22484109-TC-T 20322223-TC-T DYZ19 ***
14063145-CAGATAGAT-C 11942439-CAGATAGAT-C 13×AGAT***
22477922-C-A 20316036-C-A BY25210 DYZ19 ***
22477926-T-G 20316040-T-G BY25212 DYZ19 ***
25207880-T-A 23061733-T-A P2_r1 ***
14491321-T-A 12379518-A-. ***
13340609-A-G 11184933-A-G ***
13214289-A-ATCT 11058613-A-ATCT 19×T***
19411914-A-AAAG 17300034-A-AAAG 14×AAAG***
58890926-G-C 56699945-C-G ***
25207876-T-A 23061729-T-A P2_r1 ***
22484128-T-G 20322242-T-G DYZ19 ***
58869182-G-A 56721689-C-T ***
9847274-A-T 10009665-A-T ***
58893627-A-G 56697244-T-C ***
9216148-A-G 9378539-A-G ***
14456501-C-A 12335774-C-A 15×A***
21823564-C-G 19661678-C-G 12×G***
59021218-C-T 56875071-C-T ***
25207901-G-A 23061754-G-A P2_r1 ***
14191885-G-A 12071179-G-A ***
22355000-C-T 20193114-C-T DYZ19 ***
22355002-T-C 20193116-T-C DYZ19 ***
9216148-A-AG 9378539-A-AG ***
59020363-G-A 56874216-G-A ***
59021219-T-G 56875072-T-G ***
58884875-C-A 56705996-G-T ***
58884897-T-C 56705974-A-G ***
14819059-GTTTGT-G 12707126-GTTTGT-G ***
28814983-GGG-TGA 26668836-GGG-TGA ***
14162694-G-T 12041988-G-T ***
9852999-A-G 10015390-A-G ***
6819213-G-T 6951172-G-T ***
7016147-C-A 7148106-C-A 16×A***
7117823-C-T 7249782-C-T ***
7175030-G-T 7306989-G-T ***
7313481-C-T 7445440-C-T ***
7345392-C-T 7477351-C-T ***
7541457-C-A 7673416-C-A ***
7895883-T-C 8027842-T-C ***
8344283-A-G 8476242-A-G ***
8408628-G-T 8540587-G-T ***
9487464-A-G 9649855-A-G ***
9654217-C-T 9816608-C-T IR3_Prx ***
9916745-A-G 10079136-A-G ***
6747203-C-A 6879162-C-A ***
10067567-A-T 10229958-A-T ***
10067577-G-A 10229968-G-A ***
10067578-T-C 10229969-T-C ***
10067585-A-G 10229976-A-G ***
10073428-A-T 10235819-A-T ***
13446559-C-G 11290883-C-G ***
13581912-C-A 11426236-C-A ***
13732428-A-C 11576752-A-C ***
13854838-G-A 11734132-G-A ***
13979581-C-T 11858875-C-T ***
14100957-C-G 11980251-C-G ***
6819163-G-T 6951122-G-T ***
6642366-C-A 6774325-C-A ***
13194611-C-A 11038935-C-A ***
14530877-T-C 12419078-T-C FT50219 9×AC***
15263359-A-AATTTAG 13151449-A-AATTTAG ***
20025480-TCT-CCC 17913600-TCT-CCC P5_Prx ***
28356711-G-A 26210564-G-A P1_gr2 ***
25207907-G-A 23061760-G-A P2_r1 ***
25207903-C-A 23061756-C-A P2_r1 ***
10668622-GTTCCA-G ***
13194631-C-A 11038955-C-A ***
9223122-G-T 9385513-G-T ***
14774253-CTTTTTTT-C 12662322-CTTTTTTT-C 28×T***
58972697-T-G 56826550-T-G ***
58890885-C-T 56699986-G-A ***
6557865-A-C 6689824-A-C ***
23364087-CAAAA-C 21202201-CAAAA-C 16×A***
59012987-C-G 56866840-C-G ***
2866153-C-T 2998112-C-T ***
4192662-A-C 4324621-A-C ***
4228360-C-A 4360319-C-A ***
4620350-G-T 4752309-G-T ***
5048566-T-C 5180525-T-C ***
5193893-G-A 5325852-G-A ***
5427937-T-C 5559896-T-C ***
5810974-C-A 5942933-C-A ***
5900371-A-G 6032330-A-G ***
6017943-C-A 6149902-C-A ***
6100712-G-A 6232671-G-A ***
13340610-G-T 11184934-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B4NFE1538769394666938389349
Kit: 4628201484636693047588254696
Used in age calculations1538769394666938389349
Counts of SNPs21
Variant counts last updated 2021-04-29 03:54:49.

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