Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z46375 > DF106 > DF104 > DF105 > FGC4133 > FGC4134 > A2303

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B136430
BigY2
B136430
26359085-C-T 24212938-C-T P1_Y1 A*
58980462-G-T 56834315-G-T A*
22291400-C-T 20129514-C-T DYZ19 A*A*
28817696-A-T 26671549-A-T A*
56837031-C-T A*
3037566-C-T 3169525-C-T A*
26130913-G-A 23984766-G-A P1_Y1 A*A*
28803215-A-T 26657068-A-T BY151675 **+
13625321-C-T 11469645-C-T +**
7181497-C-T 7313456-C-T BY63728 YY++
8368025-A-G 8499984-A-G BY72051 YY++
22506760-C-A 20344874-C-A BY50112 DYZ19 +
15694808-C-T 13582928-C-T BY103353 YY++
6510669-G-C 6642628-G-C +
13824545-T-C 11703839-T-C +**
14276370-A-G 12155664-A-G BY94494 YY++
17810921-G-A 15699041-G-A Z29782 YY++
18091839-G-A 15979959-G-A BY119913 YY++
21563020-C-G 19401134-C-G YY+**
3018518-C-G 3150477-C-G *
13452081-T-TCCAATCCATA 11296405-T-TCCAATCCATA *
5900785-C-A 6032744-C-A *
13452080-T-C 11296404-T-C *
10956561-CTCCATTCCATTCCAT-C *
5332091-A-C 5464050-A-C *
13693167-A-C 11537491-A-C ***
3744527-G-A 3876486-G-A *
22257849-T-G 20095963-T-G DYZ19 *
16717380-T-A 14605500-T-A **
16652099-C-A 14540219-C-A **
16707587-C-A 14595707-C-A **
16530988-G-C 14419108-G-C **
16575147-G-T 14463267-G-T **
16603372-G-T 14491492-G-T **
13721060-T-A 11565384-T-A **
16530974-C-A 14419094-C-A **
16506670-G-T 14394790-G-T **
16488050-C-A 14376170-C-A **
16881991-G-T 14770111-G-T **
16354238-A-T 14242358-A-T **
16342651-G-T 14230771-G-T **
16275515-C-A 14163635-C-A YFS097129 **
13480512-G-A 11324836-G-A **
16484269-T-A 14372389-T-A **
17248919-T-C 15137039-T-C **
16941624-G-T 14829744-G-T **
17511645-G-T 15399765-G-T **
18050311-A-T 15938431-A-T **
18003209-C-A 15891329-C-A P7_Gap **
17842209-A-G 15730329-A-G **
17789712-G-C 15677832-G-C **
17701546-C-A 15589666-C-A **
17648583-G-A 15536703-G-A **
17646619-C-A 15534739-C-A **
17544703-C-A 15432823-C-A **
17433997-C-A 15322117-C-A **
16999874-G-T 14887994-G-T **
17433983-C-A 15322103-C-A **
17375046-T-G 15263166-T-G **
17306624-T-A 15194744-T-A **
17306574-C-A 15194694-C-A **
17244309-G-T 15132429-G-T **
17211049-C-A 15099169-C-A **
17169973-C-A 15058093-C-A **
17020584-T-G 14908704-T-G **
17020572-C-G 14908692-C-G **
16095267-A-C 13983387-A-C **
15754503-G-T 13642623-G-T **
16052769-C-G 13940889-C-G **
13938798-C-A 11818092-C-A **
14506003-G-C 12394208-G-C **
14462731-C-A 12342004-C-A **
14432070-C-A 12311343-C-A **
14405821-C-A 12285118-C-A **
14294140-A-C 12173434-A-C **
14251701-C-A 12130995-C-A **
13961523-T-A 11840817-T-A **
13945339-C-A 11824633-C-A **
13921556-C-A 11800850-C-A **
14605791-C-A 12493993-C-A **
13883137-C-A 11762431-C-A **
13839811-GAATGA-G 11719105-GAATGA-G **
11677328-A-C **
11674179-G-T **
11663207-G-T **
11643711-A-C **
13717510-G-T 11561834-G-T **
11643689-G-C **
14550151-A-G 12438352-A-G **
14715214-C-A 12603281-C-A **
16041016-G-A 13929136-G-A **
15468286-T-C 13356406-T-C **
16027872-C-A 13915992-C-A **
15942974-A-T 13831094-A-T **
15823602-C-A 13711722-C-A **
15774656-C-A 13662776-C-A **
15770384-C-A 13658504-C-A **
15654958-G-GA 13543078-G-GA **
15547169-C-A 13435289-C-A Y33249 **
15536523-G-T 13424643-G-T **
15420105-C-A 13308225-C-A **
14768370-C-A 12656439-C-A **
15391337-C-A 13279457-C-A **
15258804-A-G 13146888-A-G **
15252859-G-T 13140945-G-T **
15183687-A-G 13071773-A-G **
15084649-C-A 12972739-C-A **
13480523-T-C 11324847-T-C **
15060571-C-A 12948663-C-A **
15059732-T-C 12947824-T-C **
18108642-C-A 15996762-C-A **
19345847-C-A 17233967-C-A **
18454972-T-G 16343092-T-G P6_Dst **
28777245-A-G 26631098-A-G **
56716137-A-G **
56716132-G-A **
56716128-G-A **
56716116-T-C **
56716108-G-C **
56716088-T-G **
56716068-A-G **
56716067-G-C **
28745056-C-A 26598909-C-A **
56756891-A-T **
28729454-C-A 26583307-C-A **
28707328-C-A 26561181-C-A **
28589521-C-A 26443374-C-A **
28461027-C-A 26314880-C-A **
26379121-C-A 24232974-C-A P1_Y1 **
26310949-T-G 24164802-T-G P1_Y1 **
24511288-C-A 22365141-C-A **
24447107-G-T 22300960-G-T **
24265867-A-G 22119720-A-G P3_b1 **
56716140-C-A **
56833197-A-G **
23817973-T-A 21656087-T-A **
8481475-TA-T 8613434-TA-T **
22551419-A-G 20389533-A-G **
13487139-G-A 11331463-G-A **
13351966-A-G 11196290-A-G **
13205587-A-C 11049911-A-C **
9623647-A-ATAGTG 9786038-A-ATAGTG IR3_Prx **
9623644-A-G 9786035-A-G IR3_Prx **
6493140-CA-C 6625099-CA-C 10×A**
3362082-G-A 3494041-G-A **
23569392-G-A 21407506-G-A **
56833198-C-CTCCA **
27861040-G-GTTTT 25714893-G-GTTTT P1_Y2 17×T**
13487134-C-T 11331458-C-T **
13205597-T-C 11049921-T-C **
8481467-T-A 8613426-T-A **
31625-G-T **
56849779-G-T **
56839437-A-T **
56839412-G-C **
56833204-T-TC **
23954252-C-G 21808105-C-G **
23569051-G-T 21407165-G-T **
18523980-G-T 16412100-G-T P6_Dst **
19464955-G-T 17353075-G-T **
21015171-A-T 18853285-A-T P4_Dst **
21015151-A-C 18853265-A-C P4_Dst **
20510953-C-A 18349067-C-A P5_Dst **
20469340-C-A 18307454-C-A P5_Dst **
20210243-C-A 18048357-C-A P5_Dst **
20025563-AG-A 17913683-AG-A P5_Prx **
19891491-T-C 17779611-T-C P5_Prx **
19619172-C-A 17507292-C-A P5_Prx **
19410185-C-A 17298305-C-A **
21037544-C-A 18875658-C-A **
13433702-C-A 11278026-C-A **
19110044-C-A 16998164-C-A **
19110023-C-T 16998143-C-T **
19060004-T-A 16948124-T-A **
18796430-C-A 16684550-C-A **
18753398-G-T 16641518-G-T **
18630068-C-A 16518188-C-A **
18625513-ATCCCTT-A 16513633-ATCCCTT-A **
18567768-T-A 16455888-T-A **
21015178-C-T 18853292-C-T P4_Dst **
21106879-C-A 18944993-C-A **
23488834-T-TAA 21326948-T-TAA 30×A**
22192922-C-A 20031036-C-A **
23252690-C-A 21090804-C-A **
23142526-T-A 20980640-T-A **
22793998-T-A 20632112-T-A **
22730652-C-A 20568766-C-A A19276 **
22430097-C-A 20268211-C-A DYZ19 **
22277772-T-A 20115886-T-A DYZ19 **
22218861-G-A 20056975-G-A DYZ19 **
22199299-C-A 20037413-C-A **
22176244-C-A 20014358-C-A **
21109207-C-A 18947321-C-A **
22167903-C-T 20006017-C-T ****
22088713-C-A 19926827-C-A **
22027870-T-A 19865984-T-A **
21969695-C-A 19807809-C-A **
21785968-C-A 19624082-C-A **
21770220-T-C 19608334-T-C **
21616085-T-A 19454199-T-A **
21295250-TTC-T 19133364-TTC-T **
21244028-C-A 19082142-C-A **
13453368-C-A 11297692-C-A **
22238322-G-A 20076436-G-A Y128031 DYZ19 **
13313007-C-A 11157331-C-A **
5194701-T-A 5326660-T-A **
6038076-C-A 6170035-C-A **
6038029-C-A 6169988-C-A **
5852004-T-A 5983963-T-A **
5718563-T-C 5850522-T-C **
5625251-G-T 5757210-G-T **
5473614-G-T 5605573-G-T **
5473552-T-G 5605511-T-G **
5243498-C-A 5375457-C-A **
5194667-C-G 5326626-C-G **
6131059-C-A 6263018-C-A **
5194653-G-T 5326612-G-T **
4556996-G-T 4688955-G-T **
4445673-G-T 4577632-G-T **
4382475-A-C 4514434-A-C **
4230385-C-A 4362344-C-A **
4016995-C-A 4148954-C-A **
3990726-C-A 4122685-C-A **
3850187-G-C 3982146-G-C **
3847319-C-A 3979278-C-A **
6092272-T-G 6224231-T-G **
13287367-C-A 11131691-C-A **
3470608-G-T 3602567-G-T **
7303197-C-A 7435156-C-A **
8849731-C-A 8981690-C-A **
8170316-T-G 8302275-T-G **
8170155-A-T 8302114-A-T **
8013417-C-A 8145376-C-A **
7705541-C-A 7837500-C-A **
7532276-GTATATATATATATATATATATATATATATATATATATATATATA-G 7664235-GTATATATATATATATATATATATATATATATATATATATATATA-G 28×TA**
7390692-C-A 7522651-C-A **
7339892-T-C 7471851-T-C **
7252395-AAC-A 7384354-AAC-A **
6350687-A-T 6482646-A-T **
7248025-A-T 7379984-A-T **
7228919-T-G 7360878-T-G **
7216517-C-A 7348476-C-A **
7207392-TAA-T 7339351-TAA-T 11×A**
7165267-A-T 7297226-A-T **
7157001-G-T 7288960-G-T **
6983661-C-A 7115620-C-A **
6637077-C-A 6769036-C-A **
6429728-T-A 6561687-T-A **
3576521-G-T 3708480-G-T **
3390300-C-A 3522259-C-A **
8855301-C-A 8987260-C-A **
11003743-C-G **
11005538-A-T **
10692849-A-T **
18965934-C-A 16854054-C-A **
6520069-A-C 6652028-A-C **
10889767-T-A **
10889764-C-A **
14716627-C-A 12604695-C-A **
13461027-G-C 11305351-G-C **
58874820-C-T 56716051-G-A **
11003759-A-T **
58874785-T-A 56716086-A-T **
9623630-A-G 9786021-A-G IR3_Prx **
58833965-A-G 56756906-T-C **
27423563-A-ATAT 25277416-A-ATAT P1_g3 **
13487144-G-A 11331468-G-A **
4031513-CAA-C 4163472-CAA-C 16×A**
13222618-A-T 11066942-A-T **
13222611-G-A 11066935-G-A **
13205595-AATAT-A 11049919-AATAT-A 9×AT**
11005544-C-A **
11643718-G-T **
3389105-T-C 3521064-T-C **
13212526-C-A 11056850-C-A **
3385775-C-A 3517734-C-A **
3285064-G-T 3417023-G-T **
3270839-T-C 3402798-T-C **
3131385-C-T 3263344-C-T **
2885778-C-A 3017737-C-A **
2817709-CAAAAAAAA-C 2949668-CAAAAAAAA-C 30×A**
10979085-C-A **
15743698-C-A 13631818-C-A **
13460962-G-A 11305286-G-A **
3965424-C-A 4097383-C-A **
13460941-C-G 11305265-C-G **
10784433-C-A **
18060257-C-A 15948377-C-A **
22076946-C-A 19915060-C-A **
26358766-C-A 24212619-C-A P1_Y1 **
11652747-C-A **
3112280-C-A 3244239-C-A **
18951952-C-A 16840072-C-A **
21306535-C-A 19144649-C-A **
8854314-G-C 8986273-G-C **
6134754-A-C 6266713-A-C **
14143088-TTATTTTA-T 12022382-TTATTTTA-T **
10895910-C-A **
10935966-C-A **
10935520-T-TTGA **
10934957-G-T **
10933600-C-A **
9112789-G-T **
10906223-T-G **
10906218-G-C **
10906151-G-T **
10877820-T-A **
10941981-C-A **
10877807-C-A **
10877802-C-G **
10877787-A-T **
10877779-A-T **
10857434-A-C **
10850590-C-T **
10849773-G-A **
10849771-G-C **
10849761-A-C **
10940866-C-A **
10950000-C-T **
10849738-T-C **
10981852-C-A **
13240694-C-A 11085018-C-A **
13218926-C-G 11063250-C-G **
13198143-A-C 11042467-A-C **
11025043-C-T **
11011395-G-A **
11006649-T-C **
11006648-T-C **
10997948-C-A **
10989128-A-C **
10981754-C-A **
10954410-C-A **
10981415-C-A **
10980641-C-A **
10971255-C-CGGATG **
10971254-C-A **
10971241-A-T **
10971239-C-A **
10958261-TAACATG-T **
10958260-A-AC **
10958250-A-T **
10849747-A-T **
10918457-T-A **
10847788-C-G **
10664350-A-G **
10677123-C-A **
10671512-TTCCAC-T **
10669503-C-A **
10664392-T-C **
10664383-C-T **
10664379-C-T **
10664376-T-C **
10664353-C-G **
10664347-A-G **
10755322-C-A **
10655551-C-A **
10655550-T-C **
10655544-T-C **
9652159-T-TAC 9814550-T-TAC IR3_Prx **
9465387-T-A 9627778-T-A **
9453246-T-G 9615637-T-G **
9034586-C-T 9196977-C-T **
9034585-G-C 9196976-G-C **
9034570-T-G 9196961-T-G **
10683221-C-A **
10655563-T-C **
10786886-C-A **
10798301-A-C **
10833168-C-A **
10798307-G-A **
10795223-G-T **
10779279-A-G **
10792753-C-G **
10783170-C-A **
10807745-C-A **
10798352-A-AC **
6205660-GA-G 6337619-GA-G IR3_Dst ***
5400897-G-T 5532856-G-T ***
5347695-CT-C 5479654-CT-C ***
28006376-AC-A,A 25860229-AC-A,A P1_Y2 ***
3637475-G-A 3769434-G-A ***
10992697-C-A ***
2730092-ATT-A,ATTTT 2862051-ATT-A,ATTTT 17×T***
23089622-C-A 20927736-C-A ***
13460987-G-T 11305311-G-T ***
28534940-CTT-C,CT 26388793-CTT-C,CT 18×T***
13476570-C-A 11320894-C-A ***
26435402-A-G 24289255-A-G P1_Y1 ***
13476571-A-G 11320895-A-G ***
18698688-C-A 16586808-C-A ***
7146148-A-G 7278107-A-G ***
18547340-TAA-T 16435460-TAA-T 12×A***
9503761-A-C 9666152-A-C BY53918 ***
24388337-A-G 22242190-A-G ***
22506662-G-C 20344776-G-C DYZ19 ***
22476289-C-A 20314403-C-A DYZ19 ***
22228192-T-A 20066306-T-A DYZ19 ***
18109358-TA-T,TAA 15997478-TA-T,TAA 23×A***
15118821-A-G 13006908-A-G ***
15976262-T-C 13864382-T-C ***
10980702-TCCA-C ***
8681392-C-A 8813351-C-A ***
11003920-TATTCCATTCC-T ***
9991637-C-CTT 10154028-C-CTT 20×T***
9949482-T-C 10111873-T-C ***
13476642-C-G 11320966-C-G ***
8481488-T-A 8613447-T-A ***
8481486-T-A 8613445-T-A ***
18933076-C-A 16821196-C-A ***
15967503-C-CTT 13855623-C-CTT 14×T***
18997418-C-A 16885538-C-A ***
10924410-T-G ***
3271563-C-A 3403522-C-A ***
24362254-T-C 22216107-T-C ***
6773436-C-A 6905395-C-A ***
6700942-C-A 6832901-C-A ***
6671866-C-A 6803825-C-A ***
15483841-C-A 13371961-C-A ***
21446217-CTTTTTTT-C 19284331-CTTTTTTT-C 23×T***
10924364-C-ACACAA ***
3385374-C-A 3517333-C-A ***
10924348-A-T ***
8321435-CT-C,CTT 8453394-CT-C,CTT 15×T***
2960062-CAAAAA-C 3092021-CAAAAA-C 17×A***
2843145-C-A 2975104-C-A ***
2768078-A-G 2900037-A-G ***
2807051-T-C 2939010-T-C ***
28548073-G-T 26401926-G-T ***
56832890-A-T ***
23577177-C-A 21415291-C-A ***
14031744-TTCTTTC-T,TTCTT 11911038-TTCTTTC-T,TTCTT ***
3700107-TAA-T 3832066-TAA-T 15×A***
10769824-G-T ***
21354473-A-AAAT 19192587-A-AAAT 7×AAT***
7446859-A-T 7578818-A-T IR1_L ***
15156539-C-A 13044626-C-A ***
56861821-A-AC,C ***
10792764-A-T ***
22804701-C-A 20642815-C-A ***
13476654-G-C 11320978-G-C ***
56835079-C-CACTCCATTCA ***
13453492-T-A 11297816-T-A ***
13453464-C-T 11297788-C-T ***
28614753-T-TA 26468606-T-TA 12×A***
16028164-C-A 13916284-C-A ***
56828799-C-A ***
2790303-CTT-C,CTTT 2922262-CTT-C,CTTT 15×T***
17279659-C-A 15167779-C-A ***
56839390-T-G ***
8911717-G-T 9043676-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B136430933418776545347568114
Kit: B1364301495816593609838301379
Used in age calculations1495816593609838301379
Counts of SNPs77
Variant counts last updated 2019-08-26 22:53:29.



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