Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z30/S271 > Z2 > Z7 > Z8 > ZZ58 > FGC1954 > FGC35289 > S9565

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
15018873-C-A 12906962-C-A FGC35297 YY+
18653831-G-A 16541951-G-A FGC35303 YY+
7135716-T-C 7267675-T-C FGC35290 YY+
7167538-T-G 7299497-T-G FGC35291 YY+
8060670-A-G 8192629-A-G FGC35292 YY+
9109856-G-A 9272247-G-A FGC35293 Y+
13658651-C-T 11502975-C-T FGC35294 +
13966414-G-A 11845708-G-A FGC35296 Y+
15493401-C-T 13381521-C-T FGC35299 YY+
18826884-C-A 16715004-C-A FGC35304 YY+
22168377-T-C 20006491-T-C FGC35306 Y+
22994696-T-C 20832810-T-C FGC35307 YY+
23074327-T-C 20912441-T-C FGC35308 YY+
6721204-C-T 6853163-C-T FGC35288 Y+
15177030-C-G 13065116-C-G FGC35298 YY*
23154524-A-G 20992638-A-G FGC35309 YY*
13567075-T-G 11411399-T-G **
22252263-G-T 20090377-G-T DYZ19 **
22449088-A-T 20287202-A-T DYZ19 **
9913468-C-A 10075859-C-A **
2824720-A-ACCCCCC 2956679-A-ACCCCCC **
3909109-C-CAAA 4041068-C-CAAA 22×A**
9342857-GGATTGGGT-G 9505248-GGATTGGGT-G **
13290894-A-G 11135218-A-G **
22234427-T-A 20072541-T-A DYZ19 ***
26399324-A-T 24253177-A-T P1_Y1 ***
24341119-C-T 22194972-C-T P3_t1 ***
25733405-G-T 23587258-G-T P1_b3 ***
25733411-G-T 23587264-G-T P1_b3 ***
25975078-T-A 23828931-T-A P1_Y1 ***
26081762-G-A 23935615-G-A P1_Y1 ***
26325125-C-T 24178978-C-T P1_Y1 ***
26399321-G-C 24253174-G-C P1_Y1 ***
26399322-G-C 24253175-G-C P1_Y1 ***
26399323-A-T 24253176-A-T P1_Y1 ***
26441459-A-T 24295312-A-T P1_Y1 ***
24137866-G-T 21991719-G-T P3_b1 ***
26441484-G-C 24295337-G-C P1_Y1 ***
26467374-T-C 24321227-T-C P1_Y1 ***
26946301-T-C 24800154-T-C P1_r3 ***
27132983-C-A 24986836-C-A P1_g3 ***
27258952-C-T 25112805-C-T P1_g3 ***
27540586-T-A 25394439-T-A P1_Y2 ***
27540602-T-A 25394455-T-A P1_Y2 ***
27540604-G-A 25394457-G-A P1_Y2 ***
27540605-T-A 25394458-T-A P1_Y2 ***
24137870-G-A 21991723-G-A P3_b1 ***
22309539-AC-CA 20147653-AC-CA DYZ19 ***
28818221-G-A 26672074-G-A ***
22342605-T-A 20180719-T-A DYZ19 ***
22227915-C-A 20066029-C-A DYZ19 ***
22250531-G-T 20088645-G-T DYZ19 ***
13475584-A-G 11319908-A-G ***
22308886-T-C 20147000-T-C DYZ19 ***
22308948-C-G 20147062-C-G DYZ19 ***
22309874-A-T 20147988-A-T DYZ19 ***
22337779-A-T 20175893-A-T DYZ19 ***
22337914-A-C 20176028-A-C DYZ19 ***
22342564-G-T 20180678-G-T DYZ19 ***
22362582-C-T 20200696-C-T DYZ19 ***
22481801-G-C 20319915-G-C DYZ19 ***
22362590-C-T 20200704-C-T DYZ19 ***
22364722-G-T 20202836-G-T DYZ19 ***
22365774-G-T 20203888-G-T DYZ19 ***
22503065-A-T 20341179-A-T DYZ19 ***
22488137-A-T 20326251-A-T DYZ19 ***
22504665-C-T 20342779-C-T DYZ19 ***
22504670-C-G 20342784-C-G DYZ19 ***
22757324-T-C 20595438-T-C ***
22503061-C-A 20341175-C-A DYZ19 ***
27638687-A-T 25492540-A-T P1_Y2 ***
58824595-C-A 56766276-G-T ***
17006261-C-T 14894381-C-T S19088 17×T***
22308904-TCCAA-CGCAG 20147018-TCCAA-CGCAG DYZ19 ***
16729172-GTTTTT-G 14617292-GTTTTT-G 22×T***
17006257-GTTTC-TTTTT 14894377-GTTTC-TTTTT ***
17919855-G-GAAAAAAAA 15807975-G-GAAAAAAAA 25×A***
18008706-GA-TT 15896826-GA-TT P7_Dst ***
18564316-CTTTTTTT-C 16452436-CTTTTTTT-C 19×T***
20645843-C-TTTTTTTTTTT 18483957-C-TTTTTTTTTTT P4_Prx 29×T***
21292579-T-TAA 19130693-T-TAA 15×A***
22223302-AAG-CGATCT 20061416-AAG-CGATCT DYZ19 ***
22308894-TTCA-ATGT 20147008-TTCA-ATGT DYZ19 ***
22337716-CA-AT 20175830-CA-AT DYZ19 ***
13475608-GGGG-AGGT 11319932-GGGG-AGGT ***
22337915-TTT-CTC 20176029-TTT-CTC DYZ19 ***
22520788-C-CCAAAA 20358902-C-CCAAAA 23×A***
22936288-CTTTTTTTT-C 20774402-CTTTTTTTT-C 25×T***
26399322-GAAA-CTTATTC 24253175-GAAA-CTTATTC P1_Y1 ***
26441494-TC-T 24295347-TC-T P1_Y1 ***
28253491-C-CAAGAAA 26107344-C-CAAGAAA P1_b4 32×A***
28375653-T-TA 26229506-T-TA P1_gr2 14×A***
13611983-CCTATG-TTTTTT 11456307-CCTATG-TTTTTT ***
58838453-C-T 56752418-G-A ***
2745863-C-CAATCA 2877822-C-CAATCA ***
58870750-C-G 56720121-G-C ***
58888762-G-T 56702109-C-A ***
58891693-T-G 56699178-A-C ***
58891697-C-T 56699174-G-A ***
58894959-C-T 56695912-G-A ***
58903646-C-T 56687225-G-A ***
58910445-T-A 56680426-A-T ***
22308918-AA-CT 20147032-AA-CT DYZ19 ***
2729648-C-CTTTTTTTT 2861607-C-CTTTTTTTT 25×T***
22309516-CAC-TAA 20147630-CAC-TAA DYZ19 ***
13448629-AATTGC-A 11292953-AATTGC-A ***
2888870-C-CAAAA 3020829-C-CAAAA 32×A***
3028325-T-TC 3160284-T-TC ***
22309507-TGTCT-GGTCC 20147621-TGTCT-GGTCC DYZ19 ***
6597369-C-AA 6729328-C-AA ***
7280952-C-CTTTTTT 7412911-C-CTTTTTT 26×T***
10034788-TGCCTT-CGCCCA 10197179-TGCCTT-CGCCCA ***
13132894-GATATG-TAAACT 10622380-GATATG-TAAACT ***
22223386-T-A 20061500-T-A DYZ19 ***
21097187-T-C 18935301-T-C ***
22369637-G-T 20207751-G-T DYZ19 ***
22343865-G-A 20181979-G-A DYZ19 ***
58820486-TAATT-CAATA 56770381-AATTA-TATTG ***
58913290-TGTGGT-AGTGAC 56677576-ACCACA-GTCACT ***
22267290-C-A 20105404-C-A DYZ19 ***
26210073-C-T 24063926-C-T P1_Y1 ***
26210096-C-T 24063949-C-T P1_Y1 ***
26210099-T-A 24063952-T-A P1_Y1 ***
13873321-AT-A 11752615-AT-A ***
13104557-A-T 10594043-A-T ***
5478376-C-T 5610335-C-T ***
22342588-T-C 20180702-T-C DYZ19 ***
14989218-T-TAAAAAAAAAAAAAAAAA 12877284-TAA-T 27×A***
13701724-G-A 11546048-G-A ***
58914452-C-G 56676419-G-C ***
10084635-A-T 10247026-A-T ***
26538252-CAA-C 24392105-CAA-C P1_g2 17×A***
58857561-C-G 56733310-G-C ***
3902221-A-T 4034180-A-T ***
22342623-C-A 20180737-C-A DYZ19 ***
13468751-G-T 11313075-G-T BY45448 ***
22364818-C-T 20202932-C-T DYZ19 ***
13110052-C-A 10599538-C-A ***
3186735-C-A 3318694-C-A ***
22481279-C-T 20319393-C-T DYZ19 ***
22495822-G-A 20333936-G-A DYZ19 ***
21177056-T-TTA 19015170-T-TTA 11×TA***
7573168-G-A 7705127-G-A ***
13728263-T-C 11572587-T-C ***
28336668-C-CAAAA 26190521-C-CAAAA P1_b4 31×A***
58863512-TCT-GCC 56727357-AGA-GGC ***
22267284-C-A 20105398-C-A DYZ19 ***
58822239-TTT-GTC 56768630-AAA-GAC ***
13470158-AGG-GCC 11314482-AGG-GCC ***
58877094-CCATAG-C 56713768-AATGCT-A ***
22226691-C-A 20064805-C-A DYZ19 ***
58893196-T-A 56697675-A-T ***
28022790-G-T 25876643-G-T P1_Y2 ***
27808469-C-TT 25662322-C-TT P1_Y2 ***
58888780-A-C 56702091-T-G ***
20574937-TG-T 18413051-TG-T P5_Dst ***
17086602-CATAT-C 14974722-CATAT-C 22×AT***
20362762-T-A 18200876-T-A P5_Dst ***
58820493-A-T 56770378-T-A ***
22308937-C-G 20147051-C-G DYZ19 ***
3838397-T-C 3970356-T-C ***
20785019-A-T 18623133-A-T P4_Prx ***
22309476-G-A 20147590-G-A DYZ19 ***
13110370-C-T 10599856-C-T ***
13132866-A-T 10622352-A-T ***
13132881-T-A 10622367-T-A ***
13355957-G-A 11200281-G-A ***
13397355-A-G 11241679-A-G ***
13464679-A-C 11309003-A-C ***
13485376-TAA-CAT 11329700-TAA-CAT ***
13721885-G-A 11566209-G-A ***
13472128-TGG-CAT 11316452-TGG-CAT ***
13472141-G-A 11316465-G-A ***
10084650-G-T 10247041-G-T ***
13472129-G-A 11316453-G-A ***
22495769-CTCATC-TCACTT 20333883-CTCATC-TCACTT DYZ19 ***
22245015-C-T 20083129-C-T DYZ19 ***
19385305-G-T 17273425-G-T ***
19664156-T-A 17552276-T-A P5_Prx ***
19738571-A-T 17626691-A-T P5_Prx ***
19997323-G-C 17885443-G-C P5_Prx ***
20362786-A-C 18200900-A-C P5_Dst ***
20664249-G-T 18502363-G-T P4_Prx ***
10094922-G-A 10257313-G-A ***
10084640-C-A 10247031-C-A ***
3902213-A-T 4034172-A-T ***
4146225-T-C 4278184-T-C ***
4778052-C-T 4910011-C-T ***
4819993-T-G 4951952-T-G ***
5056567-C-T 5188526-C-T ***
5260431-T-A 5392390-T-A ***
5442225-G-A 5574184-G-A ***
5857858-A-G 5989817-A-G ***
16077542-GC-AA 13965662-GC-AA ***
7449836-G-A 7581795-G-A IR1_L ***
10084631-G-T 10247022-G-T ***
58844955-C-A 56745916-G-T ***
58915880-A-G 56674991-T-C ***
9214511-G-A 9376902-G-A ***
9313078-A-G 9475469-A-G ***
9675284-T-C 9837675-T-C IR3_Prx ***
9749847-T-A 9912238-T-A ***
9749848-T-A 9912239-T-A ***
58981976-T-TTCCG 56835829-T-TTCCG ***
10084620-G-A 10247011-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: NFTE414408654101575348407874
Used in age calculations14408654101575348407874
Counts of SNPs1412
Variant counts last updated 2019-09-27 03:21:06.

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