Tree Position

R-P312/S116 > Z46577 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > Y2:34105-T-C > FGC5780 > L658 > FGC5757 > FGC5787 > FGC5766 > FGC5767

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFGC
75TK7
Manual
Edits
hg19:Y:19044814-A-T hg38:Y:16932934-A-T BY61065Z10947 Z26530 V3706 YP5729 YY+
hg19:Y:6465756-A-G hg38:Y:6597715-A-G FGC71632 +
hg19:Y:19455644-C-T hg38:Y:17343764-C-T FGC71633 YY+
hg19:Y:28662352-A-G hg38:Y:26516205-A-G FGC71634 +
hg19:Y:22366303-T-A hg38:Y:20204417-T-A DYZ19 **
hg19:Y:22996969-G-GATAT hg38:Y:20835083-G-GATAT 21×AT**
hg19:Y:58890258-G-C hg38:Y:56700613-C-G **
hg19:Y:7059311-G-T hg38:Y:7191270-G-T **
hg19:Y:27964588-C-A hg38:Y:25818441-C-A P1_Y2 **
hg19:Y:59017580-T-C hg38:Y:56871433-T-C **
hg19:Y:20045253-G-A hg38:Y:17933373-G-A P5_Prx ***
hg19:Y:22479173-C-G hg38:Y:20317287-C-G FGC8621BY24630 DYZ19 ***
hg19:Y:15320634-A-G hg38:Y:13208740-A-G ***
hg19:Y:28253559-G-A hg38:Y:26107412-G-A A10492 P1_b4 ***
hg19:Y:13480641-TGC-AGA hg38:Y:11324965-TGC-AGA ***
hg19:Y:13425683-A-G hg38:Y:11270007-A-G ***
hg19:Y:3628709-G-GA hg38:Y:3760668-G-GA 26×A***
hg19:Y:22262437-T-GA hg38:Y:20100551-T-GA DYZ19 ***
hg19:Y:20143886-N-A hg38:Y:18032006-A-. P5_Dst ***
hg19:Y:13267772-T-TCCC hg38:Y:11112096-T-TCCC ***
hg19:Y:13351208-T-A hg38:Y:11195532-T-A ***
hg19:Y:13383329-T-C hg38:Y:11227653-T-C ***
hg19:Y:13448734-C-CATTCG hg38:Y:11293058-C-CATTCG ***
hg19:Y:13450880-C-CCACTCCACTCCTCTCCCCAA hg38:Y:11295204-C-CCACTCCACTCCTCTCCCCAA ***
hg19:Y:24387597-T-C hg38:Y:22241450-T-C ***
hg19:Y:3809307-A-G hg38:Y:3941266-A-G ***
hg19:Y:13466450-G-C hg38:Y:11310774-G-C ***
hg19:Y:13713552-G-A hg38:Y:11557876-G-A DYZ17 ***
hg19:Y:59023473-T-G hg38:Y:56877326-T-G ***
hg19:Y:22359398-G-T hg38:Y:20197512-G-T DYZ19 ***
hg19:Y:22512092-G-T hg38:Y:20350206-G-T BY33236 DYZ19 ***
hg19:Y:6346082-TTATA-T hg38:Y:6478041-TTATA-T 21×TA***
hg19:Y:16344407-C-CTTCTTA hg38:Y:14232527-C-CTTCTTA ***
hg19:Y:13466719-GAGCA-ATGCG hg38:Y:11311043-GAGCA-ATGCG ***
hg19:Y:13485502-GT-AC hg38:Y:11329826-GT-AC ***
hg19:Y:22512027-A-T hg38:Y:20350141-A-T BY225795 DYZ19 ***
hg19:Y:3930563-GTATATA-G hg38:Y:4062522-GTATATA-G 21×TA***
hg19:Y:9372603-CTT-C hg38:Y:9534994-CTT-C 13×T***
hg19:Y:9324835-C-T hg38:Y:9487226-C-T ***
hg19:Y:58979485-CTCT-TTCC hg38:Y:56833338-CTCT-TTCC ***
hg19:Y:58982195-GCTG-CCTC hg38:Y:56836048-GCTG-CCTC ***
hg19:Y:58982220-TTGC-CTGT hg38:Y:56836073-TTGC-CTGT ***
hg19:Y:22366285-T-G hg38:Y:20204399-T-G DYZ19 ***
hg19:Y:13141893-AAGA-GAAT hg38:Y:10631379-AAGA-GAAT ***
hg19:Y:58893745-C-A hg38:Y:56697126-G-T ***
hg19:Y:9303212-G-C hg38:Y:9465603-G-C ***
hg19:Y:13456021-T-TTCCAC hg38:Y:11300345-T-TTCCAC ***
hg19:Y:13868722-AAT-TAC hg38:Y:11748016-AAT-TAC DYZ17 ***
hg19:Y:13452316-ACACG-GCACA hg38:Y:11296640-ACACG-GCACA ***
hg19:Y:58865728-G-A hg38:Y:56725143-C-T ***
hg19:Y:13452369-TTC-CTG hg38:Y:11296693-TTC-CTG ***
hg19:Y:13452384-TTC-CTG hg38:Y:11296708-TTC-CTG ***
hg19:Y:13447311-GCATTCCACTCCACTCCACTCCACTCCACTCCACTCCACT-ACATTCCACTACACTCCACTCCACA hg38:Y:11291635-GCATTCCACTCCACTCCACTCCACTCCACTCCACTCCACT-ACATTCCACTACACTCCACTCCACA ***
hg19:Y:13923559-ATAT-A hg38:Y:11802853-ATAT-A ***
hg19:Y:13688121-GG-AC hg38:Y:11532445-GG-AC DYZ17 ***
hg19:Y:58831104-A-G hg38:Y:56759767-T-C ***
hg19:Y:21524487-G-A hg38:Y:19362601-G-A ***
hg19:Y:13483917-C-A hg38:Y:11328241-C-A ***
hg19:Y:13859703-T-G hg38:Y:11738997-T-G DYZ17 ***
hg19:Y:14233571-A-T hg38:Y:12112865-A-T ***
hg19:Y:2900587-T-G hg38:Y:3032546-T-G ***
hg19:Y:2900734-A-C hg38:Y:3032693-A-C ***
hg19:Y:3490994-C-T hg38:Y:3622953-C-T ***
hg19:Y:4287526-G-T hg38:Y:4419485-G-T ***
hg19:Y:4421346-C-T hg38:Y:4553305-C-T ***
hg19:Y:4430155-C-A hg38:Y:4562114-C-A ***
hg19:Y:4912234-T-C hg38:Y:5044193-T-C ***
hg19:Y:5007689-C-A hg38:Y:5139648-C-A 22×A***
hg19:Y:5094082-C-T hg38:Y:5226041-C-T ***
hg19:Y:5094094-C-T hg38:Y:5226053-C-T ***
hg19:Y:6053270-T-G hg38:Y:6185229-T-G ***
hg19:Y:6107656-C-T hg38:Y:6239615-C-T ***
hg19:Y:6265837-C-T hg38:Y:6397796-C-T IR3_Dst ***
hg19:Y:6286523-C-T hg38:Y:6418482-C-T IR3_Dst ***
hg19:Y:6361223-C-T hg38:Y:6493182-C-T ***
hg19:Y:6534108-A-G hg38:Y:6666067-A-G ***
hg19:Y:6534109-T-C hg38:Y:6666068-T-C ***
hg19:Y:6538354-G-T hg38:Y:6670313-G-T ***
hg19:Y:7023710-G-A hg38:Y:7155669-G-A ***
hg19:Y:7076361-C-A hg38:Y:7208320-C-A ***
hg19:Y:7164283-C-A hg38:Y:7296242-C-A ***
hg19:Y:7301544-G-A hg38:Y:7433503-G-A ***
hg19:Y:7482439-G-A hg38:Y:7614398-G-A IR1_L ***
hg19:Y:8724604-T-C hg38:Y:8856563-T-C ***
hg19:Y:9583851-A-T hg38:Y:9746242-A-T IR3_Prx ***
hg19:Y:9923262-T-G hg38:Y:10085653-T-G ***
hg19:Y:10069267-G-T hg38:Y:10231658-G-T ***
hg19:Y:13222087-A-G hg38:Y:11066411-A-G ***
hg19:Y:13351126-G-A hg38:Y:11195450-G-A ***
hg19:Y:13425661-C-T hg38:Y:11269985-C-T ***
hg19:Y:13425662-C-T hg38:Y:11269986-C-T ***
hg19:Y:13452248-C-T hg38:Y:11296572-C-T ***
hg19:Y:13458497-G-T hg38:Y:11302821-G-T ***
hg19:Y:13644624-A-C hg38:Y:11488948-A-C ***
hg19:Y:13730481-A-G hg38:Y:11574805-A-G DYZ17 ***
hg19:Y:13859604-G-A hg38:Y:11738898-G-A DYZ17 ***
hg19:Y:13859615-C-T hg38:Y:11738909-C-T DYZ17 ***
hg19:Y:13859630-G-C hg38:Y:11738924-G-C DYZ17 ***
hg19:Y:13859640-G-A hg38:Y:11738934-G-A FT130667 DYZ17 ***
hg19:Y:13859934-G-A hg38:Y:11739228-G-A DYZ17 ***
hg19:Y:13859935-G-T hg38:Y:11739229-G-T DYZ17 ***
hg19:Y:13859948-T-C hg38:Y:11739242-T-C DYZ17 ***
hg19:Y:13859949-G-A hg38:Y:11739243-G-A DYZ17 ***
hg19:Y:13859959-G-A hg38:Y:11739253-G-A DYZ17 ***
hg19:Y:13859969-G-T hg38:Y:11739263-G-T DYZ17 ***
hg19:Y:14464427-A-G hg38:Y:12343700-A-G FGC34987 ***
hg19:Y:14963815-T-G hg38:Y:12851890-T-G ***
hg19:Y:14964684-C-T hg38:Y:12852759-C-T ***
hg19:Y:15233306-G-T hg38:Y:13121392-G-T ***
hg19:Y:15379675-A-C hg38:Y:13267795-A-C ***
hg19:Y:15759531-A-G hg38:Y:13647651-A-G ***
hg19:Y:15920675-C-G hg38:Y:13808795-C-G ***
hg19:Y:16677787-A-G hg38:Y:14565907-A-G ***
hg19:Y:16700983-G-A hg38:Y:14589103-G-A ***
hg19:Y:17226007-C-A hg38:Y:15114127-C-A ***
hg19:Y:17324161-T-G hg38:Y:15212281-T-G ***
hg19:Y:17624914-T-C hg38:Y:15513034-T-C ***
hg19:Y:18511252-C-A hg38:Y:16399372-C-A P6_Dst ***
hg19:Y:18530994-T-A hg38:Y:16419114-T-A P6_Dst ***
hg19:Y:18709973-A-T hg38:Y:16598093-A-T ***
hg19:Y:19355061-T-G hg38:Y:17243181-T-G ***
hg19:Y:19756151-T-C hg38:Y:17644271-T-C P5_Prx ***
hg19:Y:20103957-C-A hg38:Y:17992077-C-A P5_Dst ***
hg19:Y:20128004-T-A hg38:Y:18016124-T-A P5_Dst ***
hg19:Y:20128119-C-T hg38:Y:18016239-C-T P5_Dst ***
hg19:Y:20244008-T-C hg38:Y:18082122-T-C P5_Dst ***
hg19:Y:20676308-T-G hg38:Y:18514422-T-G P4_Prx ***
hg19:Y:20873988-T-C hg38:Y:18712102-T-C P4_Dst ***
hg19:Y:21281433-T-C hg38:Y:19119547-T-C ***
hg19:Y:22050169-G-A hg38:Y:19888283-G-A ***
hg19:Y:22050171-G-A hg38:Y:19888285-G-A ***
hg19:Y:22270079-G-C hg38:Y:20108193-G-C DYZ19 ***
hg19:Y:22270087-T-G hg38:Y:20108201-T-G DYZ19 ***
hg19:Y:22270092-T-A hg38:Y:20108206-T-A DYZ19 ***
hg19:Y:22270094-C-T hg38:Y:20108208-C-T DYZ19 ***
hg19:Y:22270103-C-A hg38:Y:20108217-C-A DYZ19 ***
hg19:Y:22270104-C-T hg38:Y:20108218-C-T DYZ19 ***
hg19:Y:22283526-A-T hg38:Y:20121640-A-T DYZ19 ***
hg19:Y:22283709-A-T hg38:Y:20121823-A-T DYZ19 ***
hg19:Y:22317831-T-G hg38:Y:20155945-T-G DYZ19 ***
hg19:Y:22448711-A-G hg38:Y:20286825-A-G DYZ19 ***
hg19:Y:22466436-G-A hg38:Y:20304550-G-A DYZ19 ***
hg19:Y:22479158-C-G hg38:Y:20317272-C-G ZS2637 DYZ19 ***
hg19:Y:22503233-C-T hg38:Y:20341347-C-T DYZ19 ***
hg19:Y:22510063-A-G hg38:Y:20348177-A-G DYZ19 ***
hg19:Y:22512034-A-T hg38:Y:20350148-A-T DYZ19 ***
hg19:Y:22512058-G-T hg38:Y:20350172-G-T BY48681 DYZ19 ***
hg19:Y:22512066-A-T hg38:Y:20350180-A-T BY225803 DYZ19 ***
hg19:Y:22512070-A-T hg38:Y:20350184-A-T DYZ19 ***
hg19:Y:22512104-A-C hg38:Y:20350218-A-C DYZ19 ***
hg19:Y:22512110-A-G hg38:Y:20350224-A-G DYZ19 ***
hg19:Y:22512117-C-T hg38:Y:20350231-C-T DYZ19 ***
hg19:Y:22534631-A-C hg38:Y:20372745-A-C ***
hg19:Y:22872307-C-A hg38:Y:20710421-C-A ***
hg19:Y:22872317-A-C hg38:Y:20710431-A-C ***
hg19:Y:22872320-A-C hg38:Y:20710434-A-C ***
hg19:Y:22872349-A-C hg38:Y:20710463-A-C ***
hg19:Y:23142239-C-T hg38:Y:20980353-C-T ***
hg19:Y:24141503-C-A hg38:Y:21995356-C-A P3_b1 ***
hg19:Y:24446930-G-A hg38:Y:22300783-G-A ***
hg19:Y:24614442-A-G hg38:Y:22468295-A-G P3_t2 ***
hg19:Y:24858659-T-C hg38:Y:22712512-T-C IR1_R ***
hg19:Y:25045665-A-G hg38:Y:22899518-A-G g1 ***
hg19:Y:25073419-G-T hg38:Y:22927272-G-T g1 ***
hg19:Y:25101688-G-C hg38:Y:22955541-G-C g1 ***
hg19:Y:25200702-T-C hg38:Y:23054555-T-C g1 ***
hg19:Y:25497301-T-G hg38:Y:23351154-T-G P2_r2 ***
hg19:Y:25576795-A-T hg38:Y:23430648-A-T P1_gr1 ***
hg19:Y:25648557-C-T hg38:Y:23502410-C-T P1_b3 ***
hg19:Y:26088317-G-A hg38:Y:23942170-G-A P1_Y1 ***
hg19:Y:26140465-C-G hg38:Y:23994318-C-G P1_Y1 ***
hg19:Y:26177706-G-A hg38:Y:24031559-G-A P1_Y1 ***
hg19:Y:26205162-T-C hg38:Y:24059015-T-C P1_Y1 ***
hg19:Y:26321215-A-G hg38:Y:24175068-A-G P1_Y1 ***
hg19:Y:26379411-C-A hg38:Y:24233264-C-A P1_Y1 22×A***
hg19:Y:26462455-A-G hg38:Y:24316308-A-G P1_Y1 ***
hg19:Y:26487512-G-C hg38:Y:24341365-G-C P1_Y1 ***
hg19:Y:26499708-T-G hg38:Y:24353561-T-G P1_Y1 ***
hg19:Y:26519211-C-T hg38:Y:24373064-C-T P1_Y1 ***
hg19:Y:26906647-G-A hg38:Y:24760500-G-A A3591 P1_r3 ***
hg19:Y:26991312-T-C hg38:Y:24845165-T-C P1_r4 ***
hg19:Y:26991313-G-C hg38:Y:24845166-G-C P1_r4 ***
hg19:Y:27248485-G-C hg38:Y:25102338-G-C P1_g3 ***
hg19:Y:27262812-A-G hg38:Y:25116665-A-G P1_g3 ***
hg19:Y:27482050-C-T hg38:Y:25335903-C-T P1_Y2 ***
hg19:Y:27576552-C-T hg38:Y:25430405-C-T P1_Y2 ***
hg19:Y:27583024-G-T hg38:Y:25436877-G-T P1_Y2 ***
hg19:Y:27607448-G-C hg38:Y:25461301-G-C P1_Y2 ***
hg19:Y:28157279-G-T hg38:Y:26011132-G-T P1_b4 ***
hg19:Y:28311346-G-A hg38:Y:26165199-G-A P1_b4 ***
hg19:Y:28373980-C-A hg38:Y:26227833-C-A P1_gr2 ***
hg19:Y:28619306-G-T hg38:Y:26473159-G-T ***
hg19:Y:28745855-G-T hg38:Y:26599708-G-T ***
hg19:Y:58848056-A-T hg38:Y:56742815-T-A ***
hg19:Y:58856494-T-A hg38:Y:56734377-A-T ***
hg19:Y:58865974-A-T hg38:Y:56724897-T-A ***
hg19:Y:58866174-A-C hg38:Y:56724697-T-G ***
hg19:Y:58971327-C-T hg38:Y:56825180-C-T ***
hg19:Y:58978888-T-C hg38:Y:56832741-T-C ***
hg19:Y:59007593-G-A hg38:Y:56861446-G-A ***
hg19:Y:22509423-ACCGGT-CCTGGA hg38:Y:20347537-ACCGGT-CCTGGA DYZ19 ***
hg19:Y:5784060-CTCAA-C hg38:Y:5916019-CTCAA-C ***
hg19:Y:9030408-AGAAAGGAAAGGAAAG-A hg38:Y:9192799-AGAAAGGAAAGGAAAG-A 17×GAAAG***
hg19:Y:13143363-CTCG-ATCT hg38:Y:10632849-CTCG-ATCT ***
hg19:Y:13855520-CGGATGGA-AGG hg38:Y:11734814-CGGATGGA-AGG DYZ17 ***
hg19:Y:13965269-CAAAAAAAA-C hg38:Y:11844563-CAAAAAAAA-C 21×A***
hg19:Y:14730396-CAAAAA-C hg38:Y:12618464-CAAAAA-C 18×A***
hg19:Y:15263363-T-TAAATTC hg38:Y:13151453-T-TAAATTC ***
hg19:Y:17920941-CAAAAAAAAAAAAAAAAAAA-C hg38:Y:15809061-CAAAAAAAAAAAAAAAAAAA-C 45×A***
hg19:Y:18354249-GAAAG-A hg38:Y:16242369-GAAAG-A P6_Prx ***
hg19:Y:21482762-C-CTTTTTTT hg38:Y:19320876-C-CTTTTTTT 19×T***
hg19:Y:22510062-TA-AG hg38:Y:20348176-TA-AG DYZ19 ***
hg19:Y:24836730-AGGAG-A hg38:Y:22690583-AGGAG-A P3_b2 ***
hg19:Y:26631899-A-ATT hg38:Y:24485752-A-ATT P1_g2 20×T***
hg19:Y:26991330-CCGTA-C hg38:Y:24845183-CCGTA-C P1_r4 ***
hg19:Y:58912499-TTTG-ATTC hg38:Y:56678369-CAAA-GAAT ***
hg19:Y:58979129-CCAC-TCAG hg38:Y:56832982-CCAC-TCAG ***
hg19:Y:58979394-TTTCC-ATTCA hg38:Y:56833247-TTTCC-ATTCA ***
hg19:Y:58982127-GTTCC-ATTCT hg38:Y:56835980-GTTCC-ATTCT ***
hg19:Y:59013608-GTATATATA-G hg38:Y:56867461-GTATATATA-G 15×TA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual16996559-C-A14884679-C-AR-FGC5780 SNP Pack

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 75TK71558946395055538413034
Used in age calculations1558946395055538413034
Counts of SNPs22
Variant counts last updated 2026-09-14 03:00:58.



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