Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > Y2:34105-T-C > FGC5780 > L658 > FGC5757 > FGC5787 > FGC5766 > FGC5767

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
6465756-A-G 6597715-A-G FGC71632 +
28662352-A-G 26516205-A-G FGC71634 +
19044814-A-T 16932934-A-T Z10947 Z26530 V3706 YP5729 YY+
19455644-C-T 17343764-C-T FGC71633 YY+
7059311-G-T 7191270-G-T **
59017580-T-C 56871433-T-C **
59023316-C-A 56877169-C-A **
3588094-GTA-G 3720053-GTA-G 24×TA**
22366303-T-A 20204417-T-A DYZ19 **
58890258-G-C 56700613-C-G **
59024394-CTG-C 56878247-CTG-C **
22996969-G-GATAT 20835083-G-GATAT 21×AT**
27964588-C-A 25818441-C-A P1_Y2 **
22512066-A-T 20350180-A-T BY225803 DYZ19 ***
22512058-G-T 20350172-G-T BY48681 DYZ19 ***
22512034-A-T 20350148-A-T DYZ19 ***
22510063-A-G 20348177-A-G DYZ19 ***
22512070-A-T 20350184-A-T DYZ19 ***
22503233-C-T 20341347-C-T DYZ19 ***
22512104-A-C 20350218-A-C DYZ19 ***
20045253-G-A 17933373-G-A P5_Prx ***
22512110-A-G 20350224-A-G DYZ19 ***
22512117-C-T 20350231-C-T DYZ19 ***
22534631-A-C 20372745-A-C ***
22872307-C-A 20710421-C-A ***
22872317-A-C 20710431-A-C ***
22872320-A-C 20710434-A-C ***
22872349-A-C 20710463-A-C ***
23142239-C-T 20980353-C-T ***
24141503-C-A 21995356-C-A P3_b1 ***
24446930-G-A 22300783-G-A ***
24614442-A-G 22468295-A-G P3_t2 ***
24858659-T-C 22712512-T-C IR1_R ***
25045665-A-G 22899518-A-G g1 ***
25073419-G-T 22927272-G-T g1 ***
22479158-C-G 20317272-C-G ZS2637 DYZ19 ***
22283709-A-T 20121823-A-T DYZ19 ***
22466436-G-A 20304550-G-A DYZ19 ***
20873988-T-C 18712102-T-C P4_Dst ***
17624914-T-C 15513034-T-C ***
18511252-C-A 16399372-C-A P6_Dst ***
18530994-T-A 16419114-T-A P6_Dst ***
18709973-A-T 16598093-A-T ***
19355061-T-G 17243181-T-G ***
19756151-T-C 17644271-T-C P5_Prx ***
20103957-C-A 17992077-C-A P5_Dst ***
20128004-T-A 18016124-T-A P5_Dst ***
20128119-C-T 18016239-C-T P5_Dst ***
20244008-T-C 18082122-T-C P5_Dst ***
20676308-T-G 18514422-T-G P4_Prx ***
21281433-T-C 19119547-T-C ***
22448711-A-G 20286825-A-G DYZ19 ***
22050169-G-A 19888283-G-A ***
22050171-G-A 19888285-G-A ***
22270079-G-C 20108193-G-C DYZ19 ***
22270087-T-G 20108201-T-G DYZ19 ***
22270092-T-A 20108206-T-A DYZ19 ***
22270094-C-T 20108208-C-T DYZ19 ***
22270103-C-A 20108217-C-A DYZ19 ***
22270104-C-T 20108218-C-T DYZ19 ***
22283526-A-T 20121640-A-T DYZ19 ***
25200702-T-C 23054555-T-C g1 ***
22317831-T-G 20155945-T-G DYZ19 ***
25101688-G-C 22955541-G-C g1 ***
26177706-G-A 24031559-G-A P1_Y1 ***
25497301-T-G 23351154-T-G P2_r2 ***
14730396-CAAAAA-C 12618464-CAAAAA-C 18×A***
58866174-A-C 56724697-T-G ***
58971327-C-T 56825180-C-T ***
58978888-T-C 56832741-T-C ***
59007593-G-A 56861446-G-A ***
22509423-ACCGGT-CCTGGA 20347537-ACCGGT-CCTGGA DYZ19 ***
5784060-CTCAA-C 5916019-CTCAA-C ***
13143363-CTCG-ATCT 10632849-CTCG-ATCT ***
13855520-CGGATGGA-AGG 11734814-CGGATGGA-AGG ***
13965269-CAAAAAAAA-C 11844563-CAAAAAAAA-C 21×A***
15263363-T-TAAATTC 13151453-T-TAAATTC ***
58856494-T-A 56734377-A-T ***
18354249-GAAAG-A 16242369-GAAAG-A P6_Prx ***
21482762-C-CTTTTTTT 19320876-C-CTTTTTTT 19×T***
22510062-TA-AG 20348176-TA-AG DYZ19 ***
24836730-AGGAG-A 22690583-AGGAG-A P3_b2 ***
26631899-A-ATT 24485752-A-ATT P1_g2 20×T***
26991330-CCGTA-C 24845183-CCGTA-C P1_r4 ***
58912499-TTTG-ATTC 56678369-CAAA-GAAT ***
58979129-CCAC-TCAG 56832982-CCAC-TCAG ***
58979394-TTTCC-ATTCA 56833247-TTTCC-ATTCA ***
58982127-GTTCC-ATTCT 56835980-GTTCC-ATTCT ***
58865974-A-T 56724897-T-A ***
58848056-A-T 56742815-T-A ***
25576795-A-T 23430648-A-T P1_gr1 ***
26906647-G-A 24760500-G-A A3591 P1_r3 ***
25648557-C-T 23502410-C-T P1_b3 ***
26088317-G-A 23942170-G-A P1_Y1 ***
26140465-C-G 23994318-C-G P1_Y1 ***
17226007-C-A 15114127-C-A ***
26205162-T-C 24059015-T-C P1_Y1 ***
26321215-A-G 24175068-A-G P1_Y1 ***
26379411-C-A 24233264-C-A P1_Y1 22×A***
26462455-A-G 24316308-A-G P1_Y1 ***
26487512-G-C 24341365-G-C P1_Y1 ***
26499708-T-G 24353561-T-G P1_Y1 ***
26519211-C-T 24373064-C-T P1_Y1 ***
26991312-T-C 24845165-T-C P1_r4 ***
28745855-G-T 26599708-G-T ***
26991313-G-C 24845166-G-C P1_r4 ***
27248485-G-C 25102338-G-C P1_g3 ***
27262812-A-G 25116665-A-G P1_g3 ***
27482050-C-T 25335903-C-T P1_Y2 ***
27576552-C-T 25430405-C-T P1_Y2 ***
27583024-G-T 25436877-G-T P1_Y2 ***
27607448-G-C 25461301-G-C P1_Y2 ***
28157279-G-T 26011132-G-T P1_b4 ***
28311346-G-A 26165199-G-A P1_b4 ***
28373980-C-A 26227833-C-A P1_gr2 ***
28619306-G-T 26473159-G-T ***
17324161-T-G 15212281-T-G ***
15233306-G-T 13121392-G-T ***
16700983-G-A 14589103-G-A ***
58893745-C-A 56697126-G-T ***
19319834-G-GTA 17207954-G-GTA 23×TA***
13485502-GT-AC 11329826-GT-AC ***
22512027-A-T 20350141-A-T BY225795 DYZ19 ***
3930563-GTATATA-G 4062522-GTATATA-G 21×TA***
9372603-CTT-C 9534994-CTT-C 13×T***
9324835-C-T 9487226-C-T ***
58979485-CTCT-TTCC 56833338-CTCT-TTCC ***
58982195-GCTG-CCTC 56836048-GCTG-CCTC ***
58982220-TTGC-CTGT 56836073-TTGC-CTGT ***
22366285-T-G 20204399-T-G DYZ19 ***
13141893-AAGA-GAAT 10631379-AAGA-GAAT ***
9303212-G-C 9465603-G-C ***
16344407-C-CTTCTTA 14232527-C-CTTCTTA ***
13456021-T-TTCCAC 11300345-T-TTCCAC ***
13868722-AAT-TAC 11748016-AAT-TAC ***
13452316-ACACG-GCACA 11296640-ACACG-GCACA ***
58865728-G-A 56725143-C-T ***
13452369-TTC-CTG 11296693-TTC-CTG ***
13452384-TTC-CTG 11296708-TTC-CTG ***
13923559-ATAT-A 11802853-ATAT-A ***
13688121-GG-AC 11532445-GG-AC ***
58831104-A-G 56759767-T-C ***
21524487-G-A 19362601-G-A ***
13466719-GAGCA-ATGCG 11311043-GAGCA-ATGCG ***
6346082-TTATA-T 6478041-TTATA-T 21×TA***
13859703-T-G 11738997-T-G ***
13351208-T-A 11195532-T-A ***
21306590-C-CA 19144704-C-CA 27×A***
15320634-A-G 13208740-A-G ***
28253559-G-A 26107412-G-A A10492 P1_b4 ***
13480641-TGC-AGA 11324965-TGC-AGA ***
13425683-A-G 11270007-A-G ***
3628709-G-GA 3760668-G-GA 26×A***
58826885-C-A 56763986-G-T ***
22262437-T-GA 20100551-T-GA DYZ19 ***
20143886-N-A 18032006-A-. P5_Dst ***
13267772-T-TCCC 11112096-T-TCCC ***
5659707-GTATATATA-G 5791666-GTATATATA-G 28×TA***
13383329-T-C 11227653-T-C ***
13329879-AATATATATAT-A 11174203-AATATATATAT-A 25×AT***
13448734-C-CATTCG 11293058-C-CATTCG ***
24387597-T-C 22241450-T-C ***
3809307-A-G 3941266-A-G ***
13466450-G-C 11310774-G-C ***
13713552-G-A 11557876-G-A ***
59017244-C-T 56871097-C-T ***
59023473-T-G 56877326-T-G ***
59024426-G-T 56878279-G-T ***
22359398-G-T 20197512-G-T DYZ19 ***
22512092-G-T 20350206-G-T BY33236 DYZ19 ***
13483917-C-A 11328241-C-A ***
14233571-A-T 12112865-A-T ***
16677787-A-G 14565907-A-G ***
13859934-G-A 11739228-G-A ***
13425661-C-T 11269985-C-T ***
13425662-C-T 11269986-C-T ***
13452248-C-T 11296572-C-T ***
13454804-T-G 11299128-T-G ***
13458497-G-T 11302821-G-T ***
13644624-A-C 11488948-A-C ***
13730481-A-G 11574805-A-G ***
13859604-G-A 11738898-G-A ***
13859615-C-T 11738909-C-T ***
13859630-G-C 11738924-G-C ***
13859640-G-A 11738934-G-A FT130667 ***
13859935-G-T 11739229-G-T ***
13222087-A-G 11066411-A-G ***
13859948-T-C 11739242-T-C ***
13859949-G-A 11739243-G-A ***
13859959-G-A 11739253-G-A ***
13859969-G-T 11739263-G-T ***
14464427-A-G 12343700-A-G FGC34987 ***
14963815-T-G 12851890-T-G ***
14964684-C-T 12852759-C-T ***
22479173-C-G 20317287-C-G FGC8621BY24630 DYZ19 ***
15379675-A-C 13267795-A-C ***
15759531-A-G 13647651-A-G ***
15920675-C-G 13808795-C-G ***
13351126-G-A 11195450-G-A ***
10069267-G-T 10231658-G-T ***
2900587-T-G 3032546-T-G ***
6265837-C-T 6397796-C-T IR3_Dst ***
2900734-A-C 3032693-A-C ***
3490994-C-T 3622953-C-T ***
4287526-G-T 4419485-G-T ***
4421346-C-T 4553305-C-T ***
4430155-C-A 4562114-C-A ***
4912234-T-C 5044193-T-C ***
5007689-C-A 5139648-C-A 22×A***
5094082-C-T 5226041-C-T ***
5094094-C-T 5226053-C-T ***
6053270-T-G 6185229-T-G ***
6107656-C-T 6239615-C-T ***
6286523-C-T 6418482-C-T IR3_Dst ***
9923262-T-G 10085653-T-G ***
6361223-C-T 6493182-C-T ***
6534108-A-G 6666067-A-G ***
6534109-T-C 6666068-T-C ***
6538354-G-T 6670313-G-T ***
7023710-G-A 7155669-G-A ***
7076361-C-A 7208320-C-A ***
7164283-C-A 7296242-C-A ***
7301544-G-A 7433503-G-A ***
7482439-G-A 7614398-G-A IR1_L ***
8724604-T-C 8856563-T-C ***
9583851-A-T 9746242-A-T IR3_Prx ***
59013608-GTATATATA-G 56867461-GTATATATA-G 15×TA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Manual16996559-C-A14884679-C-AR-FGC5780 SNP Pack

Age Analysis Information (work in progress)

Kit: 75TK71558946395055538413034
Used in age calculations1558946395055538413034
Counts of SNPs22
Variant counts last updated 2021-02-13 03:14:12.

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