Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > S701 > S690

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
2L2CG
17838002-A-G 15726122-A-G S708 Y*
13559812-G-T 11404136-G-T FGC72429 *
3930344-T-C 4062303-T-C FGC72428 *
21471688-G-C 19309802-G-C FGC72431 YY*
17227366-C-A 15115486-C-A FGC72430 Y*
13411604-T-G 11255928-T-G **
5543840-G-A 5675799-G-A **
8636472-G-A 8768431-G-A ZS12399 **
8841689-T-G 8973648-T-G **
22473187-G-T 20311301-G-T DYZ19 **
22047120-C-T 19885234-C-T **
21474480-C-T 19312594-C-T **
24604541-G-T 22458394-G-T P3_t2 **
21055418-T-C 18893532-T-C **
20809914-G-A 18648028-G-A P4_Gap **
19375643-T-C 17263763-T-C **
17711401-T-C 15599521-T-C **
18462580-TACACACAC-T 16350700-TACACACAC-T P6_Dst 20×AC**
17071362-T-A 14959482-T-A **
3128545-A-G 3260504-A-G **
16710925-T-C 14599045-T-C **
4269131-T-C 4401090-T-C **
15215057-G-T 13103143-G-T **
15119480-T-C 13007567-T-C **
4917023-A-T 5048982-A-T **
5033418-A-G 5165377-A-G **
14237881-T-A 12117175-T-A **
13845534-T-G 11724828-T-G **
13599085-A-T 11443409-A-T **
13598444-C-T 11442768-C-T **
3723889-A-G 3855848-A-G **
10047556-A-G 10209947-A-G **
4646572-G-T 4778531-G-T FGC46 Z8144 **
6020697-T-G 6152656-T-G Z3156 **
58882923-G-C 56707948-C-G ***
18234181-A-C 16122301-A-C ***
18227294-T-C 16115414-T-C ***
18179630-C-G 16067750-C-G ***
18052655-T-G 15940775-T-G ***
17945014-A-C 15833134-A-C ***
13447311-GCATTCCACTCCACTCCACTCCACTCCACTCCACTCCACTCCA-CCATTCCTCTCCACTCCACTCCACTCCACTCCACACCACTCCT 11291635-GCATTCCACTCCACTCCACTCCACTCCACTCCACTCCACTCCA-CCATTCCTCTCCACTCCACTCCACTCCACTCCACACCACTCCT ***
13486502-TT-CC 11330826-TT-CC ***
17618877-A-T 15506997-A-T ***
18290634-C-A 16178754-C-A P6_Prx ***
17543787-G-A 15431907-G-A ***
17332282-A-T 15220402-A-T ***
13867029-GCAGAGGAATGG-ACAGCGGAGTGC 11746323-GCAGAGGAATGG-ACAGCGGAGTGC ***
17220920-A-C 15109040-A-C ***
16364099-TATATATATATATACAC-T 14252219-TATATATATATATACAC-T ***
17061438-G-T 14949558-G-T ***
18234201-C-T 16122321-C-T ***
18465570-T-A 16353690-T-A P6_Dst ***
16914572-A-C 14802692-A-C Y97668 ***
19102475-G-T 16990595-G-T ***
19411926-G-C 17300046-G-C ***
19387415-T-A 17275535-T-A ***
13445362-CAAA-C 11289686-CAAA-C 15×A***
19310987-A-T 17199107-A-T ***
19294523-A-G 17182643-A-G ***
19175207-A-G 17063327-A-G ***
19075511-A-G 16963631-A-G ***
18511289-G-A 16399409-G-A P6_Dst ***
19026823-C-A 16914943-C-A ***
19019162-A-G 16907282-A-G ***
18938881-T-A 16827001-T-A ***
18938872-C-A 16826992-C-A ***
18739681-A-C 16627801-A-C ***
18519544-A-G 16407664-A-G P6_Dst ***
18517741-G-A 16405861-G-A P6_Dst ***
17026510-A-C 14914630-A-C ***
16940151-GTA-G 14828271-GTA-G ***
16785315-T-C 14673435-T-C ***
13380009-T-C 11224333-T-C ***
24420903-TTTTTTTTTTTTTTTTTTTTG-T 22274756-TTTTTTTTTTTTTTTTTTTTG-T ***
25592861-ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTA-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 23446714-ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTA-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC P1_gr1 20×CT***
28628398-T-TTATATA 26482251-T-TTATATA 17×TA***
13482049-A-C 11326373-A-C ***
13459557-T-C 11303881-T-C ***
13459551-A-T 11303875-A-T ***
13344552-A-G 11188876-A-G ***
13728668-C-A 11572992-C-A ***
13344544-C-G 11188868-C-G ***
13339493-G-A 11183817-G-A ***
13339482-T-G 11183806-T-G ***
13223559-A-G 11067883-A-G ***
13222967-A-G 11067291-A-G ***
13203986-G-A 11048310-G-A ***
13137433-A-C 10626919-A-C ***
13679069-G-C 11523393-G-C ***
13811352-T-C 11690646-T-C ***
19487079-T-C 17375199-T-C ***
14643705-G-T 12531774-G-T ***
16496668-T-C 14384788-T-C ***
15958485-A-T 13846605-A-T ***
15799441-C-T 13687561-C-T ***
15574896-T-C 13463016-T-C ***
15335993-C-G 13224111-C-G ***
17151241-C-CT 15039361-C-CT ***
17543791-GA-G 15431911-GA-G ***
14623517-T-C 12511715-T-C ***
24387569-TATATATAT-CACATAC 22241422-TATATATAT-CACATAC ***
17562008-GTA-TTT 15450128-GTA-TTT ***
19319880-ATC-A 17208000-ATC-A ***
14613010-A-G 12501208-A-G ***
14538156-A-G 12426357-A-G ***
14467442-A-C 12346711-A-C ***
14457641-A-G 12336914-A-G ***
22502237-TGT-AGG 20340351-TGT-AGG DYZ19 ***
19426017-C-A 17314137-C-A ***
19668829-T-A 17556949-T-A P5_Prx ***
58853039-G-T 56737832-C-A ***
25963834-C-A 23817687-C-A P1_Y1 ***
26479648-C-A 24333501-C-A P1_Y1 ***
26463079-G-A 24316932-G-A P1_Y1 ***
26391280-T-C 24245133-T-C P1_Y1 ***
26214960-G-A 24068813-G-A P1_Y1 ***
26101354-A-G 23955207-A-G P1_Y1 ***
25963845-C-A 23817698-C-A P1_Y1 11×A***
58899753-G-T 56691118-C-A ***
26635661-A-G 24489514-A-G P1_g2 ***
58982365-T-A 56836218-T-A ***
25963791-G-T 23817644-G-T P1_Y1 ***
25911914-T-C 23765767-T-C P1_Y1 ***
25624119-C-T 23477972-C-T P1_b3 ***
25590702-T-C 23444555-T-C P1_gr1 ***
58982378-G-C 56836231-G-C ***
25415147-C-T 23269000-C-T P2_r2 ***
26598975-C-A 24452828-C-A P1_g2 ***
26924776-A-C 24778629-A-C P1_r3 ***
25250509-T-G 23104362-T-G P2_r1 ***
28120282-T-C 25974135-T-C P1_b4 ***
58843657-T-A 56747214-A-T ***
28662845-A-G 26516698-A-G ***
28603987-G-A 26457840-G-A ***
28534114-T-A 26387967-T-A ***
28489537-T-G 26343390-T-G ***
28190847-C-A 26044700-C-A P1_b4 ***
28147740-G-C 26001593-G-C P1_b4 ***
28111953-G-T 25965806-G-T P1_Y2 ***
27527115-A-C 25380968-A-C P1_Y2 ***
28072114-C-A 25925967-C-A P1_Y2 ***
28071994-C-T 25925847-C-T P1_Y2 ***
27906927-A-G 25760780-A-G P1_Y2 ***
27757407-A-G 25611260-A-G P1_Y2 ***
58894639-G-C 56696232-C-G ***
27546790-C-G 25400643-C-G P1_Y2 ***
27527153-T-C 25381006-T-C P1_Y2 ***
25370221-T-A 23224074-T-A P2_r2 ***
25250508-T-G 23104361-T-G P2_r1 ***
20104597-A-C 17992717-A-C P5_Dst ***
3902691-TT-AC 4034650-TT-AC ***
9624941-A-G 9787332-A-G IR3_Prx ***
21823448-A-C 19661562-A-C ***
21577857-A-G 19415971-A-G ***
21535722-T-C 19373836-T-C ***
3902679-ATG-A 4034638-ATG-A ***
21474468-T-G 19312582-T-G ***
10020891-C-CTT 10183282-C-CTT ***
22312113-T-C 20150227-T-C DYZ19 ***
21281197-T-C 19119311-T-C ***
21238353-G-T 19076467-G-T ***
13199164-C-AA 11043488-C-AA 18×A***
21036016-C-T 18874130-C-T ***
13411564-C-CA 11255888-C-CA 8×A***
20684486-A-G 18522600-A-G P4_Prx ***
20560715-A-T 18398829-A-T P5_Dst ***
3679684-A-AAATG 3811643-A-AAATG ***
22430775-A-T 20268889-A-T DYZ19 ***
13194511-ATTCC-A 11038835-ATTCC-A ***
24264951-C-T 22118804-C-T P3_b1 ***
13486612-AGGT-GGGA 11330936-AGGT-GGGA ***
24991771-C-A 22845624-C-A g1 ***
24972440-C-T 22826293-C-T g1 ***
24972423-A-G 22826276-A-G g1 ***
24686371-A-G 22540224-A-G P3_b2 ***
24435192-A-G 22289045-A-G ***
24387603-T-C 22241456-T-C ***
24189095-G-A 22042948-G-A P3_b1 ***
22457317-A-C 20295431-A-C DYZ19 ***
24114757-G-T 21968610-G-T P3_b1 ***
23272526-A-T 21110640-A-T ***
23169368-A-G 21007482-A-G ***
22797963-T-A 20636077-T-A ***
22529543-A-G 20367657-A-G ***
22476328-T-G 20314442-T-G DYZ19 ***
3131160-A-AGATC 3263119-A-AGATC ***
21986539-A-T 19824653-A-T ***
7188710-G-C 7320669-G-C ***
9555842-T-A 9718233-T-A IR3_Prx ***
3093317-G-A 3225276-G-A ***
5769172-T-C 5901131-T-C ***
5251315-C-T 5383274-C-T ***
5119291-C-T 5251250-C-T ***
5072554-G-C 5204513-G-C ***
4442866-G-T 4574825-G-T ***
3700435-A-G 3832394-A-G ***
3608289-C-T 3740248-C-T ***
6065127-A-T 6197086-A-T Y385 ***
7582903-C-A 7714862-C-A ***
13688208-A-AATGGC 11532532-A-AATGGC ***
4545124-GAC-G 4677083-GAC-G 12×AC***
13688265-CGGACCCA-TGGGCCC 11532589-CGGACCCA-TGGGCCC ***
13278993-G-GAA 11123317-G-GAA ***
58893427-G-C 56697444-C-G ***
13455968-CAAG-AAAT 11300292-CAAG-AAAT ***
28787292-TGC-AGG 26641145-TGC-AGG ***
5275954-CA-C 5407913-CA-C 27×A***
6422562-C-T 6554521-C-T ***
8191304-A-T 8323263-A-T ***
13348286-A-G 11192610-A-G ***
18890912-G-C 16779032-G-C ***
22326724-T-A 20164838-T-A DYZ19 ***
21647697-C-A 19485811-C-A ***
21307713-G-T 19145827-G-T ***
21210546-A-G 19048660-A-G ***
20748620-G-T 18586734-G-T P4_Prx ***
20574998-T-A 18413112-T-A P5_Dst ***
19337654-T-C 17225774-T-C ***
19022785-G-T 16910905-G-T ***
17596828-C-T 15484948-C-T ***
9786665-C-T 9949056-C-T ***
17450417-G-A 15338537-G-A ***
16827811-A-G 14715931-A-G ***
15282999-C-T 13171098-C-T ***
14408994-T-C 12288292-T-C ***
13906123-C-T 11785417-C-T ***
13502580-C-T 11346904-C-T ***
13486532-G-A 11330856-G-A ***
13142404-C-A 10631890-C-A ***
19609676-T-G 17497796-T-G P5_Prx ***
13204363-GATG-AATA 11048687-GATG-AATA ***
22326980-C-T 20165094-C-T DYZ19 ***
14774214-A-G 12662283-A-G ***
24485469-C-T 22339322-C-T PF3125 ***
21209528-AG-A 19047642-AG-A ***
18960485-C-G 16848605-C-G F2908 PF3028 M3364 ***
14103263-G-A 11982557-G-A M3284 CTS1868 PF2929 ***
5240764-CCTTT-C 5372723-CCTTT-C 6×CTTT***
58992818-CA-C 56846671-CA-C ***
58970609-C-T 56824462-C-T ***
25201095-G-GAAGA 23054948-G-GAAGA g1 ***
13411484-G-A 11255808-G-A ***
5525466-G-A 5657425-G-A ***
4669265-A-AT 4801224-A-AT 15×T***
4001833-G-A 4133792-G-A ***
13545355-AG-GA 11389679-AG-GA ***
58843666-T-A 56747205-A-T ***
3587292-CT-C 3719251-CT-C 22×T***
18612759-G-GTA 16500879-G-GTA 15×TA***
22352618-G-T 20190732-G-T DYZ19 ***
17596832-T-C 15484952-T-C ***
5036589-TATAT-C 5168548-TATAT-C ***
13661293-A-ATGGAG 11505617-A-ATGGAG ***
13378444-AT-A 11222768-AT-A 12×T***
58846333-CTCC-TTCA 56744535-GGAG-TGAA ***
4425038-A-AT 4556997-A-AT 13×T***
22488219-G-T 20326333-G-T DYZ19 ***
58823356-C-T 56767515-G-A ***
3804686-T-C 3936645-T-C ***
58860590-G-C 56730281-C-G ***
13827219-G-A 11706513-G-A JFS0234 ***
22326998-C-A 20165112-C-A DYZ19 ***
22476734-CAGT-GAGA 20314848-CAGT-GAGA DYZ19 ***
13701537-GGG-TGC 11545861-GGG-TGC ***
21940037-C-CATATAT 19778151-C-CATATAT 22×AT***
18123741-T-A 16011861-T-A ***
58859232-G-T 56731639-C-A ***
13836781-C-T 11716075-C-T ***
25995031-C-CTCTA 23848884-C-CTCTA P1_Y1 12×TA***
7532276-GTATATATATATATATATATATATATATATA-G 7664235-GTATATATATATATATATATATATATATATA-G 28×TA***
58845197-T-C 56745674-A-G ***
3411690-CA-C 3543649-CA-C 30×A***
6204703-G-A 6336662-G-A IR3_Dst ***
22326966-A-G 20165080-A-G DYZ19 ***
22326987-T-A 20165101-T-A DYZ19 ***
9544698-C-G 9707089-C-G IR3_Prx ***
3967325-G-A 4099284-G-A ***
5434041-A-T 5566000-A-T ***
5296829-G-A 5428788-G-A ***
5072836-A-T 5204795-A-T ***
4826483-C-T 4958442-C-T ***
4826015-A-C 4957974-A-C ***
4720369-C-A 4852328-C-A ***
4628121-C-T 4760080-C-T ***
3909854-A-G 4041813-A-G ***
5474602-G-C 5606561-G-C ***
3902692-T-C 4034651-T-C ***
3902691-T-A 4034650-T-A ***
3440040-C-A 3571999-C-A ***
3206136-A-G 3338095-A-G ***
3128547-A-G 3260506-A-G ***
3097035-T-C 3228994-T-C ***
2691787-G-A 2823746-G-A ***
2675735-G-T 2807694-G-T ***
5474492-A-T 5606451-A-T ***
5551670-G-A 5683629-G-A ***
28803100-T-C 26656953-T-C ***
7033469-A-G 7165428-A-G ***
9507971-C-T 9670362-C-T ***
9053189-G-A 9215580-G-A ***
7473274-C-T 7605233-C-T IR1_L ***
7235797-C-T 7367756-C-T ***
7223302-G-T 7355261-G-T 9×T***
7223290-G-T 7355249-G-T ***
5415286-TTATC-T 5547245-TTATC-T 8×TATC***
7118159-T-C 7250118-T-C ***
6911378-T-A 7043337-T-A ***
5937327-T-C 6069286-T-C ***
6811256-A-G 6943215-A-G ***
6750392-T-G 6882351-T-G ***
6712136-T-A 6844095-T-A ***
6675293-A-C 6807252-A-C ***
6624455-T-A 6756414-T-A ***
6346127-C-T 6478086-C-T ***
6346125-G-T 6478084-G-T ***
5955316-C-A 6087275-C-A ***
22463148-A-T 20301262-A-T DYZ19 ***
13339504-T-C 11183828-T-C ***
22326993-T-A 20165107-T-A DYZ19 ***
27609944-T-C 25463797-T-C FGC55389 P1_Y2 ***
2842212-ATT-TTA 2974171-ATT-TTA ***
4008588-C-CA 4140547-C-CA 10×A***
5961326-T-TTC 6093285-T-TTC 8×TC***
4981838-GGTGT-G 5113797-GGTGT-G 14×GT***
21084333-A-ATATG 18922447-A-ATATG ***
28504440-T-G 26358293-T-G ***
28503311-C-A 26357164-C-A ***
28189625-C-A 26043478-C-A P1_b4 ***
27462403-C-T 25316256-C-T P1_Y2 ***
13446832-ATTCCA-T 11291156-ATTCCA-T ***
27039256-C-T 24893109-C-T P1_r4 ***
26177806-G-T 24031659-G-T P1_Y1 ***
25709190-A-C 23563043-A-C P1_b3 ***
25240948-T-G 23094801-T-G P2_r1 ***
25160774-A-C 23014627-A-C g1 ***
24764088-A-G 22617941-A-G P3_b2 ***
23832801-C-A 21670915-C-A ***
23023263-C-A 20861377-C-A ***
3899954-CT-C 4031913-CT-C 9×T***
15774471-GT-G 13662591-GT-G ***
19422842-CTCT-C 17310962-CTCT-C 5×TCT***
9507965-A-T 9670356-A-T ***
21382062-A-G 19220176-A-G ***
58823335-TCATTC-T 56767529-GGGAAT-G ***
7166640-A-ATT 7298599-A-ATT 12×T***
28535161-A-C 26389014-A-C ***
17322454-AGAGG-A 15210574-AGAGG-A 4×GAGG***
8556149-G-A 8688108-G-A ***
15449935-G-T 13338055-G-T ***
16710318-A-G 14598438-A-G ***
21602794-T-G 19440908-T-G ***
18937657-ACAATACAATA-G 16825777-ACAATACAATA-G ***
17562017-A-T 15450137-A-T ***
3349229-C-CA 3481188-C-CA 22×A***
58854882-T-G 56735989-A-C ***
28229322-TAAA-T 26083175-TAAA-T P1_b4 17×A***
27610009-AACACAC-A 25463862-AACACAC-A P1_Y2 21×AC***
26107112-GA-G 23960965-GA-G P1_Y1 ***
21932179-C-CAA 19770293-C-CAA 9×A***
21771376-G-GTT 19609490-G-GTT 9×T***
59021925-CTAG-GTAGTTTT 56875778-CTAG-GTAGTTTT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2L2CG20495895102354618237287
Used in age calculations20495895102354618237287
Counts of SNPs31
Variant counts last updated 2018-05-15 21:50:39.



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