Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > M167

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N131288
BigY3
N131288
BigY2
N131288
27991202-T-C 25845055-T-C P1_Y2 A+
19947266-T-C 17835386-T-C P5_Prx ***A*A*
10629099-T-TTACGC A*
20741987-C-G 18580101-C-G P4_Prx ***A*A*
58982822-G-A 56836675-G-A A*
22305753-T-C 20143867-T-C DYZ19 ***A*
22320000-C-T 20158114-C-T DYZ19 ***A*
28816596-A-T 26670449-A-T A*A*
25971185-A-G 23825038-A-G P1_Y1 ***A*A*
16107568-G-T 13995688-G-T P8_Prx A*
20647578-G-C 18485692-G-C P4_Prx ***A*A*
18369185-A-T 16257305-A-T P6_Prx ***A*A*
25860230-T-C 23714083-T-C P1_Y1 A*
28817014-A-C 26670867-A-C A*
19745544-T-C 17633664-T-C P5_Prx A*
20689956-G-A 18528070-G-A P4_Prx A*
56833487-C-T A*
56834095-T-C A*
26495920-G-A 24349773-G-A P1_Y1 A*
26505375-C-CA 24359228-C-CA P1_Y1 A*
8580709-T-C 8712668-T-C Y87352 YY+++
7011823-AG-A 7143782-AG-A +++
6932507-C-G 7064466-C-G Y82930 YY+++
21542178-G-A 19380292-G-A Y106821 YY+++
2956898-C-A 3088857-C-A +
21508916-AG-A 19347030-AG-A +++
21342655-C-G 19180769-C-G Y106189 YY+++
10690194-C-T +
8843271-T-C 8975230-T-C BY76288 YY+++
16372830-G-A 14260950-G-A Y96136 YY+++
9489228-A-G 9651619-A-G BY79844 +++
17681202-C-G 15569322-C-G Y99922 YY+++
19771036-C-G 17659156-C-G P5_Prx ++**
19259686-C-T 17147806-C-T BY127722 YY+++
19105707-C-T 16993827-C-T Y103646 YY+++
18640665-C-T 16528785-C-T Y102284 YY+++
18630440-G-T 16518560-G-T Y102261 YY+++
17978041-G-T 15866161-G-T Y100849 Y+++
17581476-G-A 15469596-G-A Y99609 YY+++
4009290-C-T 4141249-C-T +
16985965-G-A 14874085-G-A Y97870 YY+++
16579145-C-T 14467265-C-T Y96752 YY+++
22443085-C-T 20281199-C-T BY12241BY24479 DYZ19 ++
15320454-GT-G 13208560-GT-G +++
14885403-T-G 12773469-T-G Y92443 YY+++
10765016-T-C +
21924468-C-T 19762582-C-T Y107899 YY+++
6645594-G-GA 6777553-G-GA +**
3057823-G-A 3189782-G-A +
3064272-T-A 3196231-T-A +
10892766-G-T +
19155242-G-C 17043362-G-C Y+
19065498-C-T 16953618-C-T Y+
19134848-GTGTTGT-G 17022968-GTGTTGT-G 12×TGT+***
18407579-G-A 16295699-G-A P6_Gap +
14581071-G-A 12469271-G-A YY+
14524883-T-G 12413084-T-G Y+
23815996-AT-A 21654110-AT-A +++
23272767-C-T 21110881-C-T Y111153 YY+++
10801888-C-A +
23080873-G-A 20918987-G-A Y110558 YY+++
19372284-TGATAGATA-T 17260404-TGATAGATA-T BY23459 11×GATA+****
22548780-G-A 20386894-G-A BY138874 YY+++
9912198-T-G 10074589-T-G Y+
22525157-G-GA 20363271-G-GA ++*
22460607-T-C 20298721-T-C BY171792 DYZ19 +++
21616106-T-C 19454220-T-C Y107036 YY+**
18107279-G-A 15995399-G-A Y101324 YY+++
4494382-A-G 4626341-A-G +
4568456-A-G 4700415-A-G +
4792053-T-C 4924012-T-C +
4884766-T-G 5016725-T-G +
22317673-T-A 20155787-T-A BY217303 DYZ19 ***++
5804407-C-T 5936366-C-T +
5850305-A-T 5982264-A-T +
21927924-T-A 19766038-T-A Y31874Z8252 FGC7775 YY+++
5850308-CT-C 5982267-CT-C +
6616860-G-A 6748819-G-A Y+
8757820-AT-A 8889779-AT-A 10×T*
10995832-T-C *
22288386-G-A 20126500-G-A DYZ19 *****
11000011-A-ATCCAT *
10796093-G-GTTCCA *
10883716-G-GCATTC *
28807232-A-T 26661085-A-T *
3088180-G-T 3220139-G-T FGC69512 *
10778941-TATTCCATTCC-T *
10990086-T-TACTCC *
22299063-G-A 20137177-G-A DYZ19 *****
5546681-T-TAC 5678640-T-TAC 10×AC*
7929812-C-CT 8061771-C-CT 11×T******
13567613-A-G 11411937-A-G **
13596485-C-A 11440809-C-A **
13588434-C-G 11432758-C-G **
13984183-A-T 11863477-A-T **
13491154-T-C 11335478-T-C **
13611020-T-G 11455344-T-G **
13475584-A-T 11319908-A-T **
13325998-A-T 11170322-A-T **
13475601-A-C 11319925-A-C **
10892578-C-CGTACT **
11643547-A-G **
11668802-T-G **
13253449-A-G 11097773-A-G **
13856923-G-T 11736217-G-T **
13857367-A-G 11736661-A-G **
13895781-A-C 11775075-A-C **
13921553-C-A 11800847-C-A **
10882314-C-A **
13941166-AG-A 11820460-AG-A **
13309672-G-A 11153996-G-A **
11034752-T-A **
13246039-C-A 11090363-C-A **
10941429-A-T **
10990195-A-C **
10990243-A-T **
10990189-G-C **
10990291-T-C **
10990300-C-A **
10993015-A-C **
10982319-A-T **
10965464-C-G **
10939963-A-C **
13233344-C-A 11077668-C-A **
10935730-A-C **
10930315-A-C **
10993934-A-C **
11007156-T-C **
10921997-CTACTG-C **
11026261-A-G **
11027032-T-A **
10893161-A-C **
13224624-G-A 11068948-G-A **
10024136-G-T 10186527-G-T **
14688870-A-G 12576936-A-G **
14031877-T-A 11911171-T-A **
14766574-C-T 12654643-C-T **
14606356-C-T 12494558-C-T **
14608057-T-G 12496259-T-G **
14624356-T-G 12512556-T-G **
14661629-C-A 12549694-C-A **
10881264-A-C **
14688875-A-G 12576941-A-G **
14700242-G-C 12588308-G-C **
14721807-C-A 12609875-C-A **
14735264-A-G 12623332-A-G **
14766576-C-T 12654645-C-T **
14555058-A-T 12443259-A-T **
14788072-C-A 12676143-C-A **
14792869-C-A 12680940-C-A **
14815154-A-G 12703225-A-G **
14815218-C-A 12703289-C-A **
14912023-C-G 12800090-C-G **
14931648-TATATATAATTATA-T 12819713-TATATATAATTATA-T **
14981793-AG-T 12869869-AG-T **
15083112-C-A 12971202-C-A **
15122345-A-G 13010432-A-G **
14558043-AC-A 12446244-AC-A **
14521777-T-A 12409978-T-A **
14067925-C-T 11947219-C-T **
14345042-C-T 12224337-C-T **
14074186-A-C 11953480-A-C **
14097969-G-GTT 11977263-G-GTT **
14097990-G-T 11977284-G-T **
14106957-C-T 11986251-C-T **
14160263-G-C 12039557-G-C **
14183318-C-T 12062612-C-T **
14196361-C-G 12075655-C-G **
14261474-T-A 12140768-T-A **
14313670-A-C 12192964-A-C **
14373623-T-C 12252919-T-C **
14512068-C-A 12400273-C-A **
14429398-A-T 12308673-A-T **
14429403-T-A 12308678-T-A **
14448266-T-A 12327539-T-A **
14448300-A-G 12327573-A-G **
14449792-A-C 12329065-A-C **
14472968-C-A 12352237-C-A **
12370743-T-C **
14499471-C-T 12387676-C-T **
14507680-A-G 12395885-A-G **
10882260-C-A **
8501720-T-A 8633679-T-A **
10869684-G-A **
7362629-C-A 7494588-C-A **
7197595-G-T 7329554-G-T **
7202142-T-C 7334101-T-C **
7229073-T-G 7361032-T-G **
7239569-T-C 7371528-T-C **
7295815-G-T 7427774-G-T **
7302452-G-A 7434411-G-A **
7307658-C-A 7439617-C-A **
7324715-G-A 7456674-G-A **
7339015-C-T 7470974-C-T **
7369018-C-A 7500977-C-A **
7111852-A-G 7243811-A-G **
7374993-C-T 7506952-C-T **
7475155-A-T 7607114-A-T IR1_L **
7578943-T-G 7710902-T-G **
7643050-T-C 7775009-T-C **
7664165-C-A 7796124-C-A **
7695697-A-G 7827656-A-G **
7756928-C-A 7888887-C-A **
7774985-G-A 7906944-G-A **
7990947-A-G 8122906-A-G **
7141051-C-A 7273010-C-A **
7108495-G-T 7240454-G-T **
8067443-A-G 8199402-A-G **
6509281-T-G 6641240-T-G **
5905907-A-T 6037866-A-T **
5968347-C-G 6100306-C-G **
6082720-C-A 6214679-C-A **
6246947-G-T 6378906-G-T IR3_Dst **
6289427-CA-C 6421386-CA-C IR3_Dst **
6298471-A-T 6430430-A-T IR3_Dst **
6368029-T-C 6499988-T-C **
6368037-A-G 6499996-A-G **
6430286-C-A 6562245-C-A **
6576661-A-C 6708620-A-C **
7107059-A-T 7239018-A-T **
6577121-A-T 6709080-A-T **
6771459-C-T 6903418-C-T **
6780795-T-A 6912754-T-A **
6798849-C-A 6930808-C-A **
6918429-G-T 7050388-G-T **
6918465-G-T 7050424-G-T **
6930714-G-C 7062673-G-C FT52874 **
7021618-C-A 7153577-C-A **
7043531-C-A 7175490-C-A **
7996182-T-C 8128141-T-C **
8167080-G-T 8299039-G-T **
10844659-A-T **
10776155-C-A **
10690677-A-T **
10747807-T-C **
10751758-C-A **
10753346-A-G **
10754820-A-T **
10757215-A-T **
10764679-C-A **
10772319-T-C **
10772328-A-T **
10777256-G-T **
10679333-A-G **
10792867-C-T **
10792927-C-A **
10804971-ATCCAC-A **
10816323-A-G **
10821852-C-T **
10821858-A-T **
10821862-C-T **
10829067-C-A **
10842026-A-T **
10679366-C-A **
10678282-G-GATACCATTCCACTCCATTGC **
8178790-C-T 8310749-C-T **
9438127-TTTG-T 9600518-TTTG-T **
8276196-T-C 8408155-T-C YP2651 A3726 **
8276350-T-C 8408309-T-C **
8279901-CA-C 8411860-CA-C **
8428942-TG-T 8560901-TG-T **
15249055-C-A 13137141-C-A BY100425 **
8720320-C-A 8852279-C-A **
8776593-G-T 8908552-G-T **
8807261-T-A 8939220-T-A **
9055533-AG-C **
9511657-T-A 9674048-T-A **
10661407-A-T **
9605323-A-ATG 9767714-A-ATG IR3_Prx **
9623404-C-A 9785795-C-A IR3_Prx **
9666497-G-T 9828888-G-T IR3_Prx **
9721108-T-G 9883499-T-G IR3_Prx **
9930091-G-T 10092482-G-T **
9935346-C-A 10097737-C-A **
9959737-T-C 10122128-T-C **
9959738-G-A 10122129-G-A **
10622651-G-T **
10653207-G-T **
15173625-CA-C 13061711-CA-C **
16720653-A-T 14608773-A-T **
15297624-C-A 13185723-C-A **
23026684-C-A 20864798-C-A **
22592208-CTCTG-C 20430322-CTCTG-C **
22592331-T-C 20430445-T-C **
22639406-C-G 20477520-C-G **
22639430-T-C 20477544-T-C **
22732773-C-T 20570887-C-T **
22739690-C-A 20577804-C-A **
22739714-CTCA-C 20577828-CTCA-C **
22782452-G-T 20620566-G-T **
22842098-T-C 20680212-T-C **
23127679-A-G 20965793-A-G **
22215249-A-G 20053363-A-G **
23198507-G-A 21036621-G-A **
23309377-C-A 21147491-C-A **
23317711-A-C 21155825-A-C **
23355538-T-G 21193652-T-G **
23429926-T-G 21268040-T-G **
23455062-T-C 21293176-T-C **
23981951-G-C 21835804-G-C **
23981958-A-C 21835811-A-C **
23981963-A-T 21835816-A-T **
22517318-A-G 20355432-A-G **
22209249-G-T 20047363-G-T **
24080109-T-C 21933962-T-C P3_b1 **
21299164-A-G 19137278-A-G **
20460443-T-G 18298557-T-G P5_Dst **
20516510-G-A 18354624-G-A P5_Dst **
20516524-C-T 18354638-C-T P5_Dst **
20516527-A-C 18354641-A-C P5_Dst **
21012132-T-G 18850246-T-G P4_Dst **
21037417-A-T 18875531-A-T **
21087186-G-T 18925300-G-T **
21200833-T-A 19038947-T-A **
21212373-T-C 19050487-T-C **
21368367-T-A 19206481-T-A **
22132974-A-G 19971088-A-G **
21435340-C-T 19273454-C-T Z5689 **
21651697-G-A 19489811-G-A **
21677475-G-C 19515589-G-C **
21714588-A-G 19552702-A-G **
21920682-A-C 19758796-A-C **
21959178-GT-G 19797292-GT-G **
22052607-T-C 19890721-T-C **
22077189-A-G 19915303-A-G **
22088924-C-A 19927038-C-A **
24050385-T-C 21904238-T-C P3_b1 **
24080278-C-A 21934131-C-A P3_b1 **
20213241-T-G 18051355-T-G P5_Dst **
4331914-C-T 4463873-C-T **
28801544-A-G 26655397-A-G **
56835999-A-C **
56839208-C-T **
56876084-T-A **
56876085-T-A **
56879641-A-C **
6922-T-C **
32312-G-T **
22950193-C-T 20788307-C-T 21×T**
6686439-A-G 6818398-A-G **
28726085-G-A 26579938-G-A **
9114304-TA-T **
9482506-A-C 9644897-A-C **
13466220-CT-C 11310544-CT-C **
13469964-CA-C 11314288-CA-C **
13562285-T-C 11406609-T-C **
15838169-A-C 13726289-A-C **
22816428-A-G 20654542-A-G **
25858428-A-G 23712281-A-G P1_Y1 **
28557305-A-G 26411158-A-G **
28734748-C-A 26588601-C-A **
28720071-A-G 26573924-A-G FGC45894 **
24264546-C-G 22118399-C-G P3_b1 **
27584518-C-A 25438371-C-A P1_Y2 **
24353294-C-A 22207147-C-A P3_t1 **
24353295-C-CACCT 22207148-C-CACCT P3_t1 **
24369477-A-G 22223330-A-G **
24406906-C-G 22260759-C-G **
24671193-T-G 22525046-T-G P3_b2 **
25556073-T-G 23409926-T-G P1_gr1 **
26100881-A-G 23954734-A-G P1_Y1 **
26326198-C-T 24180051-C-T P1_Y1 **
26386288-T-A 24240141-T-A P1_Y1 **
28462358-A-T 26316211-A-T **
28708946-T-G 26562799-T-G **
28484827-T-C 26338680-T-C **
28492583-G-A 26346436-G-A **
28500862-A-G 26354715-A-G **
28500930-C-T 26354783-C-T **
28516729-T-G 26370582-T-G **
28604399-C-T 26458252-C-T 5×TTA**
28631615-C-A 26485468-C-A **
28641320-A-T 26495173-A-T **
28650783-A-G 26504636-A-G **
28656166-C-A 26510019-C-A **
20325998-C-G 18164112-C-G P5_Dst **
20025402-G-GT 17913522-G-GT P5_Prx 8×T**
15347000-C-T 13235119-C-T **
16295816-A-G 14183936-A-G **
15971350-T-G 13859470-T-G **
16048928-T-G 13937048-T-G **
16119959-T-TTTAC 14008079-T-TTTAC P8_Prx 12×TTTC**
16177253-C-A 14065373-C-A **
16181337-A-C 14069457-A-C **
16221561-C-A 14109681-C-A **
16232457-C-A 14120577-C-A **
16259141-A-T 14147261-A-T **
16278588-G-T 14166708-G-T **
16309439-G-T 14197559-G-T **
15943137-G-C 13831257-G-C **
16480948-G-T 14369068-G-T **
16531093-A-AT 14419213-A-AT **
16623854-C-T 14511974-C-T **
16676616-G-A 14564736-G-A **
16677968-T-A 14566088-T-A **
16720636-C-T 14608756-C-T **
5537375-T-C 5669334-T-C **
16826500-C-A 14714620-C-A **
16996141-G-T 14884261-G-T Y97897 **
15967605-G-A 13855725-G-A Y95253 **
15943117-T-C 13831237-T-C **
17006630-C-A 14894750-C-A **
15653680-TG-T 13541800-TG-T **
15352893-T-G 13241012-T-G **
15369126-G-C 13257246-G-C **
15430720-C-A 13318840-C-A **
15576577-A-G 13464697-A-G **
15616568-C-A 13504688-C-A **
15647562-C-A 13535682-C-A **
15653631-T-C 13541751-T-C **
15653638-T-C 13541758-T-C **
15653645-G-T 13541765-G-T **
15653697-G-A 13541817-G-A **
15931517-G-A 13819637-G-A **
15653711-AATG-A 13541831-AATG-A **
15654894-C-A 13543014-C-A **
15687712-C-A 13575832-C-A **
15729251-T-A 13617371-T-A **
15882620-C-A 13770740-C-A Y30856 **
15903970-A-G 13792090-A-G **
15912071-T-TC 13800191-T-TC **
15921343-A-G 13809463-A-G **
15928696-C-T 13816816-C-T **
16996240-G-T 14884360-G-T Y97898 **
17014692-T-A 14902812-T-A **
20004159-C-A 17892279-C-A P5_Prx **
19088145-T-G 16976265-T-G **
18766659-C-A 16654779-C-A **
18853566-T-C 16741686-T-C **
18891203-G-C 16779323-G-C **
18965060-C-T 16853180-C-T **
18972847-T-C 16860967-T-C **
18987066-A-G 16875186-A-G **
18993554-A-G 16881674-A-G **
18997306-A-T 16885426-A-T **
19053398-C-T 16941518-C-T **
19168842-A-G 17056962-A-G **
18565283-T-C 16453403-T-C **
19204536-A-T 17092656-A-T **
19302014-G-C 17190134-G-C **
19340416-C-A 17228536-C-A **
19391184-C-A 17279304-C-A **
19506903-C-T 17395023-C-T **
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14101122-G-T 11980416-G-T ***
11030271-G-C ***
13463154-A-T 11307478-A-T ***
2686623-G-A 2818582-G-A ***
15882425-C-T 13770545-C-T ***
11677378-A-G ***
11653759-A-G ***
11644899-A-T ***
17302239-TA-T,TAA 15190359-TA-T,TAA 22×A***
13845541-AAATGGAATGGAATGGAATGGAATGGAATGG-A 11724835-AAATGGAATGGAATGGAATGGAATGGAATGG-A 8×AATGG***
22291653-G-A 20129767-G-A DYZ19 ***
15512642-TA-T,TAA 13400762-TA-T,TAA 13×A***
23498118-C-T 21336232-C-T ***
23522440-A-G 21360554-A-G ***
3545468-A-G 3677427-A-G ***
10776561-C-G,T ***
25995031-CTA-C,CTATA 23848884-CTA-C,CTATA P1_Y1 12×TA***
3865973-C-A 3997932-C-A ***
13256635-GTT-G 11100959-GTT-G 16×T***
28589108-A-T 26442961-A-T ***
2810388-TTGA-A,T 2942347-TTGA-A,T ***
56837026-C-G ***
14883700-GT-G 12771766-GT-G 11×T***
16769095-AT-A 14657215-AT-A BY30419 9×T***
26465392-GA-G 24319245-GA-G P1_Y1 9×A***
25151162-AG-A 23005015-AG-A g1 ***
25106441-G-A 22960294-G-A g1 ***
25033066-G-C 22886919-G-C g1 ***
22438585-T-A 20276699-T-A DYZ19 ***
10934771-A-T ***
8890994-AAAAAAAG-A 9022953-AAAAAAAG-A ***
18806044-CTTTTTT-C,CTTTT 16694164-CTTTTTT-C,CTTTT 19×T***
11677431-T-C ***
18871674-A-G 16759794-A-G ***
13463827-G-C 11308151-G-C ***
23515162-ATT-A 21353276-ATT-A 14×T***
13464002-G-A 11308326-G-A ***
19304299-G-A 17192419-G-A ***
19394943-C-A 17283063-C-A ***
22737211-C-A 20575325-C-A ***
10755006-C-CGTGTT ***
10911982-C-A ***
21884680-C-A 19722794-C-A ***
16319580-C-A 14207700-C-A ***
10775973-T-C ***
21174616-A-G 19012730-A-G ***
21510199-CTTT-C 19348313-CTTT-C 13×T***
9945859-G-A 10108250-G-A ***
9944119-G-T 10106510-G-T ***
28660119-C-A 26513972-C-A ***
13299155-C-A 11143479-C-A ***
12882-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N1312881063901876947967774031
Kit: N131288958146778192497723292
Kit: N1312881477149992508688247576
Used in age calculations1477149992508688247576
Counts of SNPs2923
Variant counts last updated 2019-09-10 00:14:13.



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